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Author SHA1 Message Date
Dmitry Marakasov
9b2c941601 - Add CONFLICTS with science/hdf5-18 
PR:		140729
Submitted by:	Alexey Shuvaev <shuvaev@physik.uni-wuerzburg.de>
Approved by:	maintainer timeout
 2009-12-10 19:15:13 +00:00
Pav Lucistnik
c90ced8bc9 - Update to 3.6.1 
PR:		ports/141243
Submitted by:	Stas Timokhin <devel@stasyan.com>
 2009-12-08 14:58:09 +00:00
Pav Lucistnik
0eca88d377 This port has been broken for 3+ months, thus 
- Mark DEPRECATED and schedule for expiration in one month

With hat:	portmgr
 2009-12-08 14:30:09 +00:00
Koop Mast
88b729c6ff Fix build with new goffice. 2009-12-06 12:03:31 +00:00
Mark Linimon
4727575d1b Reinstate maintainer at his request. 2009-12-04 02:38:52 +00:00
Max Brazhnikov
7cb3294da7 Chase math/gsl update, 
bump PORTREVISION
 2009-12-01 20:33:45 +00:00
Wen Heping
39490db5ad - Update to 2.1.0 
- Update my mail address to FreeBSD
 2009-12-01 13:05:06 +00:00
Thierry Thomas
532f881192 - Chase relocation of net/mpich2 
- Bump PORTREVISION if needed

- Fix some portlint errors.
 2009-11-28 10:44:56 +00:00
Martin Wilke
78f963d9bd - Chase graphics/proj shlib bump 2009-11-27 23:17:38 +00:00
Sylvio Cesar Teixeira
ba072d1713 - Update my mail address to FreeBSD 
Approved by:	miwi (mentor)
 2009-11-27 22:52:30 +00:00
Beat Gaetzi
47a44eda6b - Remove obsolete gecko providers 
Approved by:	portmgr (miwi)
Exp-run by:	miwi
 2009-11-27 09:10:47 +00:00
Joe Marcus Clarke
598fc46eee Chase the goffice update. 2009-11-26 18:03:06 +00:00
Mark Linimon
89a90f22d5 Temporarily reassign ports maintained by chris@officialunix.com back to 
the pool for the duration of his upcoming move.

Requested by:	maintainer
 2009-11-26 00:36:49 +00:00
Wen Heping
afa989ca49 - Update to 1.21 2009-11-22 03:15:14 +00:00
Martin Wilke
f18e4f577d - Update to 1.0.0 
PR:		140538
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
 2009-11-19 21:10:39 +00:00
Wen Heping
81c2ba2937 PyBrain is a modular Machine Learning Library for Python. 
It's goal is to offer flexible, easy-to-use yet still powerful
algorithms for Machine Learning Tasks and a variety of
predefined environments to test and compare your algorithms.

PyBrain is short for Python-Based Reinforcement Learning,
Artificial Intelligence and Neural Network Library. In fact,
we came up with the name first and later reverse-engineerer
this quite descriptive "Backronym".

WWW:    http://pybrain.org/
 2009-11-19 13:44:38 +00:00
Pav Lucistnik
ed9c0642a6 - Mark MAKE_JOBS_UNSAFE 
Reported by:	pointyhat
 2009-11-18 22:39:55 +00:00
Pav Lucistnik
64af9fafd3 - Update to 0.10.9 2009-11-18 14:58:11 +00:00
Martin Wilke
6984815e03 - Update to 1.1.0 
PR:		140486
Submitted by:	Ports Fury
 2009-11-12 10:52:13 +00:00
Marcel Moolenaar
5b4abe09aa Builds on ia64. 
Approved by: makc
 2009-11-11 16:12:14 +00:00
Wen Heping
16a74f6132 - Update to 1.51.01 
- Update my mail address to FreeBSD
 2009-11-11 03:05:43 +00:00
Wen Heping
cf14398266 - Update to 1.2 2009-11-07 23:48:32 +00:00
Thierry Thomas
cf80506aa8 Fix plist when NOPORTDOCS / NOPORTEXAMPLES are defined. 
Reported by:	QAT
 2009-11-07 14:36:46 +00:00
Thierry Thomas
7d3001a786 Upgrade to 3.5. 
Changelog at <http://inac.cea.fr/L_Sim/V_Sim/changelog.en.html>.
 2009-11-07 10:19:44 +00:00
Maho Nakata
53f217d98f remove unnecessary file. 
Spotted by: QAT
 2009-11-06 02:04:53 +00:00
Dmitry Marakasov
e2cc2c46a8 - Update to 0.7.2 
PR:		140281
Submitted by:	Chris Petrik <chris@officialunix.com> (maintainer)
 2009-11-05 14:57:18 +00:00
Maho Nakata
1d2230f400 Update to 2.99.2. 
Feature safe:	yes
 2009-11-05 09:54:55 +00:00
Maho Nakata
ee67784c25 Update to 2.99.1 and unbreak. 
Feature safe:	yes
 2009-11-05 09:16:08 +00:00
Rong-En Fan
dc0abbdce4 - Update to 2.9 2009-11-03 06:07:36 +00:00
Wen Heping
b6ed636d82 - Update to 1.1 
- Update my mail address to FreeBSD

Approved by:	miwi,jadawin(mentors,implicit)
 2009-11-03 03:10:13 +00:00
Martin Wilke
7de59b662b - Fix MASTER_SITES 2009-10-29 12:35:55 +00:00
Martin Wilke
e5333400f2 - Update to 1.0.3 
PR:		139772
Submitted by:	Ports Fury
 2009-10-29 11:14:27 +00:00
Rong-En Fan
feb5c39858 - Update to 1.5 2009-10-29 11:09:53 +00:00
Wen Heping
fea95026bc - Update to 2.1.9 
PR:		ports/139875
Submitted by:	Sylvio Cesar <scjamorim@bsd.com.br>
Approved by:	miwi,jadawin(mentors,implicit)
 2009-10-28 13:24:46 +00:00
Wesley Shields
6803b62cc9 - Fix plist after doxygen update. 
Noticed by:	Pav (pointyhat run)
Approved by:	maho@ (maintainer)
 2009-10-21 23:25:36 +00:00
Wen Heping
7bb094e51b - Update to 1.1.3 
- Update my mail address to FreeBSD

Approved by:	jadawin(co-mentor)
 2009-10-14 07:14:42 +00:00
Maho Nakata
6444676d85 Build fix. 
Spotted by: miwi and pav
Feature safe:	yes
 2009-10-13 23:48:01 +00:00
Joe Marcus Clarke
d735d93b31 Chase the goffice update. 2009-10-11 19:18:09 +00:00
Wen Heping
7a4a1e9a95 - Update to 11.8.7 
- Update my mail address to FreeBSD

Approved by:	miwi(mentor)
 2009-10-09 13:07:57 +00:00
Maho Nakata
df2a6060e1 adding extra rpath when linking after gcc44 migration. 
Feature safe:	yes.
 2009-10-09 02:02:09 +00:00
Max Brazhnikov
a524e34a34 Respect LOCALBASE. 
Reported by:	QATty
 2009-10-07 21:11:39 +00:00
Wen Heping
473d697402 libkml is a library for use with applications that want to 
parse, generate and operate on KML. It is an implementation
of the OGC KML 2.2 standard.

WWW: http://code.google.com/p/libkml/

Approved by:	miwi(mentor)
 2009-10-07 11:10:21 +00:00
Pav Lucistnik
38eeb343d1 - Change sed delimiters away from , 
Reported by:	pointyhat
 2009-10-04 20:26:01 +00:00
Dennis Herrmann
a59dee4cff - Update to 2.0.4.3 2009-09-30 18:48:13 +00:00
Rong-En Fan
493463bb86 - Move pkgconfig config to libdata, just like others do 
- Remove a useless post-patch
- Bump PORTREVISION

Submitted by:	maintainer via irc
Feature safe:	yes
 2009-09-27 03:05:25 +00:00
Rong-En Fan
18581ecd56 - Update science/netcdf4 to 4.0.1 
- Bump PORTREVISION for dependent ports

PR:		ports/136377
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net> (maintainer)
Feature safe:	yes
 2009-09-26 15:11:38 +00:00
Joe Marcus Clarke
81e44a9ca0 Chase the goffice update. 
Feature safe:	yes
 2009-09-25 01:46:05 +00:00
Wen Heping
e16f0d6cbf - Update to 1.2.1 
PR:		ports/138984
Submitted by:	wenheping@gmail.com(myself)
Approved by:	maintainer,	jadawin(co-mentor)
Feature safe:	yes
 2009-09-24 12:49:40 +00:00
Pav Lucistnik
5642febe9d - Mark BROKEN on 7.X and 8.X 
Reported by:	pointyhat
Feature safe:	yes
 2009-09-23 18:38:47 +00:00
Mark Linimon
028c9f0e21 Mark as broken: fails to compile since default gcc updated to 4.4. 
Feature safe:	yes
 2009-09-19 22:02:40 +00:00
Wen Heping
fef6a3ff34 - Update to 0.7.1 
- Change the dependence to fftw3 from fftw2
- Remove the unnecessary dependence

PR:	ports/138630
Submitted by:	Wen Heping<wenheping@gmail.com>
Approved by:	maintainer,	miwi(mentor)
Feature safe:	yes
 2009-09-19 13:34:45 +00:00
Martin Wilke
5b58e2bcf9 mol2ps is a freely available command-line utility program which reads 
molecular structure files in different formats and generates
Postscript output for 2D display. The Postscript file can then be used
e.g. for creating a bitmap file, using a Postscript interpreter like
Ghostscript.

WWW: http://merian.pch.univie.ac.at/~nhaider/cheminf/mol2ps.html

PR:		ports/138673
Feature safe:	yes
Submitted by:	Fernan Aguero <fernan at iib.unsam.edu.ar>
 2009-09-19 11:02:46 +00:00
Martin Wilke
9d19a6b116 Checkmol is a command-line utility program which reads molecular 
structure files in different formats and analyzes the input
molecule for the presence of various functional groups and structural
elements. At present, approx. 200 different functional groups are
recognized. This output can be easily placed into a database table,
permitting the creation of chemical databases with a functional group
search option. Checkmol also outputs a set of statistical values derived
from a given molecule, which can also be used for quick retrieval from a
database. These values include: the number of atoms, bonds, and rings,
the number of differently hybridized carbon, oxgen, and nitrogen atoms,
the number of C=O double bonds, the number of rings of different sizes,
the number of rings containing nitrogen, oxygen, sulfur, the number of
aromatic rings, the number of heterocyclic rings, etc. The combination
of all of these values for a given molecule represents some kind of
"fingerprint" which is useful for rapid pre-selection in a database
structure/substructure search prior to a full atom-by-atom match.

WWW: http://merian.pch.univie.ac.at/~nhaider/cheminf/cmmm.html

PR:		ports/138670
Feature safe:yes
Submitted by:	Fernan Aguero <fernan at iib.unsam.edu.ar>
 2009-09-19 09:53:55 +00:00
Pav Lucistnik
51b4ec8d90 - Update to 0.10.8 
Feature safe:	yes
 2009-09-18 10:21:54 +00:00
Martin Wilke
91e0e6e9b5 - Update WWW 
PR:		138869
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
Feature safe:	yes
 2009-09-16 08:11:37 +00:00
Max Brazhnikov
f1b33efef6 Update to 0.9.8 
PR:		ports/138761
Submitted by:	Troels Kofoed Jacobsen (maintainer)
 2009-09-14 18:27:35 +00:00
Martin Wilke
945eb017ce - Update to 0.7.1 
PR:		138714
Submitted by:	Chris Petrik <chris@officialunix.com> (maintainer)
 2009-09-13 12:23:10 +00:00
Gerald Pfeifer
27ab5137ce Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 
implies lang/gcc44 up from lang/gcc43.

Approved by:	portmgr
 2009-09-13 00:08:01 +00:00
Koop Mast
bdce9ecd35 Update to 0.10.7. 2009-09-06 13:25:22 +00:00
Marcelo Araujo
eedb4d4bf1 - Update to 1.8.3. 
PR:		ports/138052
Submitted by:	Sylvio Cesar <scjamorim@bsd.com.br>
Approved by:	Quincey Koziol <koziol@hdfgroup.org> (maintainer)
 2009-09-03 23:47:20 +00:00
Marcelo Araujo
c795b86940 - Update to 1.6.9. 
PR:		ports/138051
Submitted by:	Sylvio Cesar <scjamorim@bsd.com.br>
Approved by:	Quincey Koziol <koziol@hdfgroup.org> (maintainer)
 2009-09-03 23:45:25 +00:00
Koop Mast
c509edc696 Update to 0.10.6. 2009-09-03 21:36:48 +00:00
Dmitry Marakasov
535382b891 - Retire MASTER_SITE_SOURCEFORGE_EXTENDED, it's no longer needed - all mirrors actually have all distfiles 
- Merge all SF mirrors to MASTER_SITE_SOURCEFORGE, resort according to quick download speed survey
- Fix MASTER_SITES for all port that have used SOURCEFORGE_EXTENTED

Approved by:	portmgr (pav)
 2009-09-02 15:01:56 +00:00
Max Brazhnikov
452f2dd010 Update peekabot to 0.7.0 
PR:		ports/138091
Submitted by:	Chris Petrik (maintainer)
 2009-08-23 15:48:18 +00:00
Dmitry Marakasov
43cd433787 - Fix fetch by using garr SF mirror which still has the distfiles 2009-08-22 01:11:41 +00:00
Dmitry Marakasov
3eb168f46b - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
Cheng-Lung Sung
b59fac5a75 - Update to 0.52 2009-08-21 09:43:44 +00:00
Marcelo Araujo
8091a28000 - Mark as broken, doesn't build with latest math/GiNaC version. 2009-08-21 01:47:14 +00:00
Martin Wilke
bd7c40c203 - Fix fetch 2009-08-19 09:27:02 +00:00
Marcelo Araujo
d32a6919df - Update of dependency to new math/GiNaC version. 
- Bump PORTREVISION.

Reported by:	erwin (pointyhat)
Submitted by:	Sylvio Cesar <scjamorim@bsd.com.br>
 2009-08-19 00:57:20 +00:00
Joe Marcus Clarke
1023ffe868 With the change in dependencies of goffice, add an explicit dependency 
on libgnomecanvas.

Reported by:	QAT
 2009-08-17 09:22:26 +00:00
Joe Marcus Clarke
74ceafb203 Chase goffice update. 2009-08-16 23:01:58 +00:00
Mark Linimon
5088afb833 Mark as broken from sparc64. 
Hat:		portmgr
 2009-08-16 04:10:54 +00:00
Diane Bruce
1c98d40f2a - Update to latest 1.1 version 
Notified by:	miwi (portscout)
 2009-08-15 19:23:49 +00:00
Martin Wilke
728dd47698 libquantum is a C library for the simulation of quantum 
mechanics, with a special focus laid to quantum computing.
It started as a pure quantum computer simulator, but
support for general quantum simulation has been recently
added.

WWW:	http://www.libquantum.de/

PR:		ports/137468
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-08-14 20:02:07 +00:00
Maho Nakata
702accd6c8 make fetchable. 2009-08-14 08:30:09 +00:00
Max Brazhnikov
b5920c3d49 Update to 1.8.0 
Mark MAKE_JOBS_SAFE
 2009-08-12 06:58:42 +00:00
Maho Nakata
740db18f37 Remove science/dft++. Not actively maintained the original site. Old 
style coding with lots of warnings, and build error with gcc44.

Also suggested by: gerald@
 2009-08-11 05:14:53 +00:00
Max Brazhnikov
028d2d48eb Update to 0.9.7 and unbreak. 
Approved by:	maintainer
 2009-08-10 17:16:46 +00:00
Max Brazhnikov
6ff7fc5b2c Update to 2.2.2 
Respect LOCALBASE (reported by QATty)
 2009-08-10 17:14:49 +00:00
Max Brazhnikov
bc25dab02f Update to 2.2.2 
Mark MAKE_JOBS_SAFE
 2009-08-10 17:13:43 +00:00
Maho Nakata
0c64f6a6a3 Silent update of distfiles, update is only for pdf documents. 
pdf files are also updated to 3.4.0.
 2009-08-10 10:06:02 +00:00
Max Brazhnikov
7b6a76419d Mark broken after recent PyQt update 2009-08-09 19:41:22 +00:00
Dmitry Marakasov
f4e8c82d19 - Mark MAKE_JOBS_UNSAFE 
PR:		137462
Submitted by:	myself
Approved by:	Quincey Koziol <koziol@hdfgroup.org> (maintainer)
 2009-08-06 14:48:21 +00:00
Dmitry Marakasov
ae3f09400c - Mark MAKE_JOBS_UNSAFE, fails with force make jobs 2009-08-05 18:17:38 +00:00
Maho Nakata
bdeceb8139 Update to 1.3.9 and unbreak. 
Hoping sparc version is also builds as well.
 2009-08-05 05:25:45 +00:00
Rong-En Fan
5fe4ea566e - Update to 1.34 2009-08-03 17:22:04 +00:00
Maho Nakata
8fd989b2ba Build fix with gcc44 (upcoming) 
Spotted by: gerald
 2009-08-03 12:32:06 +00:00
Jeremy Messenger
789d75c728 -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 
-Update libtool and libltdl to 2.2.6a.
-Remove devel/libtool15 and devel/libltdl15.
-Fix ports build with libtool22/libltdl22.
-Bump ports that depend on libltdl22 due to shared library version change.
-Explain what to do update in the UPDATING.

It has been tested with GNOME2, XFCE4, KDE3, KDE4 and other many wm/desktop
and applications in the runtime.

With help:	marcus and kwm
Pointyhat-exp:	a few times by pav
Tested by:	pgollucci, "Romain Tartière" <romain@blogreen.org>, and
		a few MarcusCom CVS users. Also, I might have missed a few.
Repocopy by:	marcus
Approved by:	portmgr
 2009-08-02 19:36:34 +00:00
Dirk Meyer
eca78ec61b - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 
Requested by:	edwin
 2009-07-31 13:57:52 +00:00
Pav Lucistnik
d1107bb40e - Update boost to 1.39 
- Split boost port to separate components, with boost-all metaport

PR:		ports/137054
Submitted by:	Alexander Churanov <churanov.port.maintainer@gmail.com> (maintainer)
 2009-07-28 11:45:08 +00:00
Martin Wilke
03ec87c322 - Update to 2.16 
PR:		136995
Submitted by:	David Necas <yeti@gwyddion.net> (maintainer)
 2009-07-28 07:24:15 +00:00
Philip M. Gollucci
c10f314307 - lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks 
PR:             ports/135398
Tested by:      2 -exp runs by pav
Approved by:    portmgr (pav)
 2009-07-22 16:27:08 +00:00
Dirk Meyer
3bbc108312 - update to jpeg7 
Tested by:	pav on pointyhat
 2009-07-18 11:11:29 +00:00
Li-Wen Hsu
9921e14e14 Add py-h5py 1.2.0, a general-purpose Python interface to the HDF5 
library.

PR:		ports/136096
Submitted by:	TAOKA Fumiyoshi
 2009-07-13 14:07:16 +00:00
Li-Wen Hsu
76649be0b1 * Fix build of science/py-scipy when math/suitesparse is installed, by 
correctly detect and depend on it in math/py-numpy
* Replace the old numpy documentation with the new numpy book
* Explicitly tell the distutil to use gnu95 fortran compiler
* Use ${PYTHONPREFIX_SITELIBDIR} rather than ${PYTHON_SITELIBDIR} when
  generating the packing list for science/py-scipy
* Bump PORTREVISIONs, for packing lists are changed

PR:		ports/136058
Submitted by:	Li-Lun Wang (Leland Wang) <llwang AT infor.org> (maintainer)
 2009-07-13 09:44:48 +00:00
Marcelo Araujo
f7b0a9efd9 - Pass maintainer to Sylvio Cesar <scjamorim at bsd.com.br>. 2009-07-10 00:48:36 +00:00
Marcelo Araujo
f5a770e851 - Mark as unbroken. 
- Bump PORTREVISION.
- Pass maintainer to submitter.

PR:		ports/135868
Submitted by:	Sylvio Cesar <scjamorim@bsd.com.br>
 2009-07-10 00:42:10 +00:00
Marcelo Araujo
1db87bb529 - Bump PORTREVISION in favor of elmer-matc. 
- Pass maintainer to Sylvio Cesar <scjamorim at bsd.com.br>
 2009-07-10 00:39:44 +00:00
Marcelo Araujo
dfa5965db2 - Fix build. 
- Sorted plist file.
- Pass maintainer to submitter.

PR:		ports/136396
Submitted by:	Sylvio Cesar <scjamorim@bsd.com.br>
 2009-07-10 00:38:10 +00:00
Pav Lucistnik
d247ee77b6 - Update to 0.10.5 2009-07-07 10:56:21 +00:00
Ion-Mihai Tetcu
49b1e9516f - update to 3.0.20081216 from 3.0.20071212 
- fix the build error with custom LOCALBASE [1]

Submitted by:	maintainer
Reported by:	QATty [1]
 2009-07-06 14:56:42 +00:00
Joe Marcus Clarke
b8eb146d98 Chase the goffice update. 2009-07-05 04:15:53 +00:00
Ion-Mihai Tetcu
29837fb06a Fix with custom LOCALBASE/PREFIX 
Submitted by:	maintainer
Reported by:	QATty
 2009-07-04 10:37:00 +00:00
Martin Wilke
24401d140b - Update to 0.8.1 
PR:		135907
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-06-24 20:57:37 +00:00
Dmitry Marakasov
a1c37dd174 peekabot is a distributed real-time 3D visualization tool for robotics 
researchers and developers, written in C++.

Its purpose is to simplify the visualization needs faced by a roboticist
daily - using visualization as a debugging aid or making fancy slides for
a presentation, for example.

Chris Petrik (chris@officialunix.com)
WWW: http://www.peekabot.org

PR:		135892
Submitted by:	Chris Petrik <c.petrik.sosa@gmail.com>
 2009-06-22 15:55:11 +00:00
Mark Linimon
e6ae104847 Update maintainer's email address. Had already been done for his 
other ports.
 2009-06-19 20:06:31 +00:00
Stanislav Sedov
cc69d7aa7d - Assign all unmaintained ruby ports to ruby@, 
so people will know where to send questions to.
 2009-06-16 15:53:25 +00:00
Erwin Lansing
5b17059c44 Remove science/openfoam as it has been marked BROKEN for over 5 months. 2009-06-13 20:02:50 +00:00
Erwin Lansing
ad47e0bb88 Remove science/elmerfront as it has been marked BROKEN over 3 months ago. 2009-06-13 20:00:48 +00:00
Dmitry Marakasov
33e3d901d4 Convert most of remaining ports that depend on xorg-libraries to 
modular xorg.

- supply corresponding USE_XORG for all imake-using ports that need it
- USE_IMAKE no longer implies USE_XLIB in absence of USE_XORG
- retire USE_X_PREFIX which is not really used anywhere after the
  above change
- a few minor nits like whitespace and SF macro

Tested by:	2 tinderbox runs by pav
Approved by:	portmgr (pav)
 2009-06-09 15:33:28 +00:00
Dmitry Marakasov
82ce95653a - Mark MAKE_JOBS_UNSAFE, fails with forced jobs on my tinderbox 2009-06-09 14:30:23 +00:00
Maho Nakata
c78ded5011 Fix build on amd64 and now it's usable. 2009-06-08 07:07:19 +00:00
Dennis Herrmann
2bd886f79d - Update to 0.9.6 
PR:		ports/135312
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
 2009-06-07 19:01:09 +00:00
Martin Wilke
81b3ce3c32 - Update to 4.0.5 
PR:		135246
Submitted by:	Florian Smeets <flo@kasimir.com> (maintainer)
 2009-06-06 22:53:25 +00:00
Dmitry Marakasov
15568ff477 - Update to 0.9.5 
PR:		135263
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
 2009-06-05 23:06:57 +00:00
Philip M. Gollucci
35f7c03e04 - Update to 0.09 
PR:             ports/134837
Approved by:    maintainer timeout (clsung; 15 days)
Submitted by:   me
 2009-06-05 22:56:07 +00:00
Martin Wilke
9735e6c7c7 - Update to 2.0.3 
PR:		135210
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-06-05 21:59:04 +00:00
Thierry Thomas
38c0413f09 Upgrade to 3.4.4. 
Changelog at <http://inac.cea.fr/L_Sim/V_Sim/changelog.en.html#3.4>.
 2009-06-05 19:25:23 +00:00
Li-Wen Hsu
fe82904993 - Update to 1.3.1 
PR:		ports/134179
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
 2009-06-05 17:13:55 +00:00
Pav Lucistnik
aa952fd48f - Resolve LATEST_LINK conflict 2009-05-31 20:31:08 +00:00
Rong-En Fan
1c688417c5 - Fix build on sparc64 by files/patch-include__gmx_cyclecounter.h 
- Fix WITH_MPICH
- Use LOCALBASE for reference to bits installed by others
- Pass maintainership to the submitter
- Pet portlint(1): IGNORE

PR:		ports/133242
Submitted by:	Florian Smeets <flo at kasimir.com>
Approved by:	Stephen Montgomery-Smith <stephen at math.missouri.edu> (maintainer)
 2009-05-30 16:17:14 +00:00
Maho Nakata
0412460a8f Take over. 2009-05-29 03:31:23 +00:00
Joe Marcus Clarke
a13d4ebe2d Chase the goffice update. 2009-05-24 19:44:21 +00:00
Dmitry Marakasov
0d74f73caf Avogadro is an advanced molecular editor designed for cross-platform use in 
computational chemistry, molecular modeling, bioinformatics, materials science,
and related areas. It offers flexible rendering and a powerful plugin
architecture.

WWW: http://avogadro.openmolecules.net/

PR:		134710
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com>
 2009-05-22 22:16:46 +00:00
Pav Lucistnik
d0f33fd4a7 - Chase fftw3 update 2009-05-18 15:08:58 +00:00
Martin Wilke
1fb0bacb5a Chemistry-MacroMol is a toolkit includes basic objects and methods to 
describe macromolecules, a macromolecule is just a molecule that
consists of several "domains". For example, a protein consists
of aminoacid residues, or a nucleic acid consists of bases. Therefore
Chemistry::MacroMol is derived from Chemistry::Mol, with additional
methods to handle the domains.

WWW: http://search.cpan.org/dist/Chemistry-MacroMol/

PR:		ports/134609
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-05-17 13:00:50 +00:00
Martin Wilke
2b8e184f62 p5-Chemistry-File-PDB reads and writes PDB files. The PDB file format 
is commonly used to describe proteins, particularly those stored in the
Protein Data Bank.

WWW: http://search.cpan.org/dist/Chemistry-File-PDB/

PR:		ports/134612
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-05-17 12:51:49 +00:00
Martin Wilke
275fec265c Chemistr-Mol is a toolkit includes basic objects and methods to 
describe molecules. It consists of several modules: Chemistry::Mol,
Chemistry::Atom, Chemistry::Bond, and Chemistry::File.

WWW: http://search.cpan.org/dist/Chemistry-Mol/

PR:		ports/134462
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-05-16 23:29:15 +00:00
Pav Lucistnik
3d5d026633 - Chase readline update 
Reported by:	pointyhat
 2009-05-13 20:22:35 +00:00
Beat Gaetzi
27fe0a252e - Update to 0.99.12 
Approved by:	miwi (mentor)
 2009-05-13 16:08:30 +00:00
Mark Linimon
cfbb13225e Release these ports into the wild due to maintainer-timeouts and no 
response to email.  We hope to see him back again sometime.
 2009-05-12 22:32:29 +00:00
Pav Lucistnik
d61c67ffd3 - Update naively to 0.10.4 and mark BROKEN: does not compile with goffice-0.7.6 2009-05-11 18:38:56 +00:00
Joe Marcus Clarke
3b5c05f9c9 Chase the API changes in goffice-0.7.6. 2009-05-10 19:10:31 +00:00
Martin Wilke
f6941c7c85 - Update to 1.00.00 
PR:		134217
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-05-10 18:36:41 +00:00
Joe Marcus Clarke
7f277b7ca6 Fix patching by merging two patches for the same file. 2009-05-09 19:07:23 +00:00
Joe Marcus Clarke
be90f09a1b Chase the goffice update. 2009-05-09 04:57:59 +00:00
Maho Nakata
efd040cee7 Update to 20090112 R1 version. 2009-05-08 06:08:44 +00:00
Yen-Ming Lee
c2c78046f6 - reset MAINTAINER per request 
PR:		134253
Submitted by:	giffunip@tutopia.com
 2009-05-06 06:13:08 +00:00
Joe Marcus Clarke
4287b4ba5c Merge some patches from gchemutils SVN to fix the build with goffice 0.7.5. 2009-05-05 05:14:51 +00:00
Joe Marcus Clarke
b2556d2449 Add some more goffice TYPE name conversions. 2009-05-03 17:59:20 +00:00
Joe Marcus Clarke
d07ad1ca0b Fix another TYPE name change with goffice 0.7.5. 2009-05-03 17:51:47 +00:00
Joe Marcus Clarke
302e506b5b Add another goffice-0.7.5 build fix. 2009-05-03 04:44:53 +00:00
Joe Marcus Clarke
e170985c57 Fix the build with goffice 0.7.5. 2009-05-03 04:00:56 +00:00
Joe Marcus Clarke
9ed5de9174 Chase the goffice update. 2009-05-03 00:38:05 +00:00
Martin Wilke
38be6ca769 - Update to 1.1.0 
PR:		133337
Submitted by:	Wen Heping <wenheping@gmail.com>
 2009-04-30 22:43:54 +00:00
Max Brazhnikov
7602b8e28d Update to 2.2.1 2009-04-26 14:49:08 +00:00
Maho Nakata
8f733c55c2 Fix build with NOPORTDOCS, NOPORTEXAMPLES. 
Submitted by:	QAT
 2009-04-24 10:26:05 +00:00
Martin Wilke
64b23ee9d0 Machine Learning PY (mlpy) is a high-performance Python package for 
predictive modeling. It makes extensive use of numpy (http://scipy.org)
to provide fast N-dimensional array manipulation and easy integration of
C code. mlpy provides high level procedures that support, with few lines
of code, the design of rich Data Analysis Protocols (DAPs) for
preprocessing, clustering, predictive classification and feature
selection. Methods are available for feature weighting and ranking, data
resampling, error evaluation and experiment landscaping.The package
includes tools to measure stability in sets of ranked feature lists.

WWW:	http://mlpy.fbk.eu/

PR:		ports/133932
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-04-23 17:02:20 +00:00
Maho Nakata
89d4fb1fe0 Update to 3.4.0. 2009-04-21 07:45:40 +00:00
Maho Nakata
33bd043b66 Fix build on amd64. 
Spotted by: QAT and pav.
 2009-04-13 05:20:27 +00:00
Yen-Ming Lee
08f9e8f9c4 - Update to 6.02 
PR:		133601
Submitted by:	leeym
Approved by:	maintainer
 2009-04-11 20:37:01 +00:00
Martin Wilke
f406ee2e01 2009-03-22 science/oof: Broken with GCC 4.2 and beyond 
2009-04-06 www/raqdevil: Master site gone, distfiles not fetchable
 2009-04-11 09:58:39 +00:00
Martin Wilke
db4b1a44a3 - Fix DEPRECATED output 
Reported by:	rmport
 2009-04-11 09:52:52 +00:00
Thierry Thomas
fefa5eaa8b - Upgrade to 5.7.3 
Release notes at
	<http://www.abinit.org/Infos_v5.7/release_notes/release_notes.html>

- enable bindings to get the headers
	This requires makemake and GSL.

Approved by:	Maho (maintainer)
 2009-04-10 15:22:53 +00:00
Dennis Herrmann
cf8759b2c9 - Update maintainer mail address 
PR:		ports/133397
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu> (maintainer)
Approved by:	tabthorpe (co-mentor)
 2009-04-05 20:50:49 +00:00
Ion-Mihai Tetcu
a5e8a0b9a9 Use NOPORTEXAMPLES and %%PORTEXAMPLES%% where appropiate to fix packaging with 
-DNOPORT* defined.

Prompted by:	QAT QA run
Approved by:	maintainer timeout on QATMail
 2009-04-05 12:29:44 +00:00
Rong-En Fan
583e279a73 - Update to 2.89 2009-04-01 01:32:16 +00:00
Martin Wilke
a8dee6b343 - Allow to build with MAKE_JOBS_SAFE 
PR:		133221
Submitted by:	Roland Smith <rsmith@xs4all.nl> (maintainer)
 2009-03-31 07:52:12 +00:00
Joe Marcus Clarke
2e77166891 Chase the goffice update. 2009-03-28 03:05:24 +00:00
Pav Lucistnik
7f4323449e - Fix for new ruby-gettext 
- Update maintainer's email address

PR:		ports/133046
Submitted by:	Shin'ya Murakami <murashin@epa.scitec.kobe-u.ac.jp> (maintainer)
 2009-03-25 12:05:43 +00:00
Max Brazhnikov
eecc33021e bump PORTREVISION after cmake update 2009-03-24 19:13:32 +00:00
Martin Wilke
4e3a8bfce2 - Update to 0.98 
PR:		132971
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-03-23 21:51:29 +00:00
Thierry Thomas
3d2ad7d3f8 - Upgrade to 5.6.5; 
- Install libabinit;

- Handle NOPORTDOCS and NOPORTEXAMPLES;

- s/test/regression-test/;

- Don't install under a versionned $PREFIX.

Approved by:	maho (maintainer)
 2009-03-23 18:27:37 +00:00
Pav Lucistnik
b50b662db3 - Fix Fortran linking 
- Add a slaveport so fortran enabled netcdf can be packaged

PR:		ports/132430
Submitted by:	thierry
Approved by:	maintainer timeout (14 days)
 2009-03-22 22:09:27 +00:00
Martin Wilke
d4d8ed5164 Geo::ReadGRIB is an object Perl module that provides read 
access to data distributed in GRIB files. Specifically,
it is wrote to access NOAA Wavewatch III marine weather
model forecasts which are packaged as GRIB.

WWW:	http://search.cpan.org/dist/Geo-ReadGRIB/

PR:		ports/132776
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-03-22 15:18:46 +00:00
Maho Nakata
dcfda0bf17 Update to 1.6.11. 2009-03-17 08:20:04 +00:00
Thierry Thomas
6a26b6b50c Fix plist with -DNOPORTDOCS. 
Reportded by:	QAT
 2009-03-16 22:34:19 +00:00
Martin Wilke
24f41cf769 - Update to 11.6.17 
PR:		131733
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-03-16 21:42:23 +00:00
Mark Linimon
c4e3a5d64a Mark as broken on sparc64: fails to compile. 2009-03-16 09:35:28 +00:00
Mark Linimon
5433360866 Mark broken: fails to compile on i386 and sparc64. 2009-03-16 08:43:58 +00:00
Martin Wilke
10b7f51c54 Brian is a simulator for spiking neural networks available on almost all 
platforms. The motivation for this project is that a simulator should
not only save the time of processors, but also the time of scientists.

Brian is easy to learn and use, highly flexible and easily extensible.
The Brian package itself and simulations using it are all written in
the Python programming language, which is an easy, concise and highly
developed language with many advanced features and development tools,
excellent documentation and a large community of users providing support
and extension packages.

WWW:  http://www.briansimulator.org/

PR:		ports/132155
Submitted by:	Wen Heping <wenheping@gmail.com>
 2009-03-16 06:07:37 +00:00
Pav Lucistnik
eae854d839 - Mark BROKEN: does not compile (../include/ecif_userinterface_TCL.h:41:17: 
error: tcl.h: No such file or directory)

Reported by:	pointyhat
 2009-03-13 14:25:43 +00:00
Thierry Thomas
befcfc1588 Upgrade to version 3.4.3. 2009-03-07 08:36:35 +00:00
Dennis Herrmann
2b3b399de8 - Use my FreeBSD address on the ports I maintain 
Approved by:	tabthorpe (co-mentor)
 2009-03-06 18:14:36 +00:00
Pav Lucistnik
911b7e57d5 - Mark BROKEN on FreeBSD 6.x, does not compile 
Reported by:	pointyhat
 2009-03-02 21:36:12 +00:00
Martin Wilke
1a9d6ed366 PsychoPy is an open-source package for creating psychology stimuli 
in Python (A real and free alternative to Matlab). PsychoPy combines
the graphical strengths of OpenGL with the easy Python syntax to give
psychophysics a free and simple stimulus presentation and control
package.

The goal is to provide, for the busy scientist (including me!), tools
to control timing and windowing and a simple set of pre-packaged
stimuli and methods. The code is platform independent, using Python
and C libraries that are widely available.

WWW:  http://www.psychopy.org/

PR:		ports/132156
Submitted by:	wenheping at gmail.com
 2009-02-28 19:58:19 +00:00
Martin Wilke
dad52be8e5 - Update to 0.7.0 
PR:		131636
Submitted by:	Wen Heping <wenheping@gmail.com>
Approved by:	maintainer
 2009-02-28 19:54:59 +00:00
Martin Wilke
484b5acc7f - Update to 4.0.3 
PR:		131655
Submitted by:	Joerg Pulz <Joerg.Pulz@frm2.tum.de>
Approved by:	maintainer
 2009-02-28 19:49:49 +00:00
Rong-En Fan
81a4189c53 - Update description to reflect reality 2009-02-25 02:30:35 +00:00
Joe Marcus Clarke
602c204a89 Chase the goffice update. 2009-02-24 02:18:50 +00:00
Martin Wilke
7d22134ae1 netCDF version 4 has many features not found in earlier versions of the 
library and is implemented on top of HDF5. This module can read and
write files in both the new netCDF 4 and the old netCDF 3 format, and
can create files that are readable by HDF5 clients. The API modelled
after Scientific.IO.NetCDF, and should be familiar to users of that
module.

Many new features of netCDF 4 are implemented, such as multiple
unlimited dimensions, groups and zlib data compression. All the new
primitive data types (such as 64 bit and unsigned integer types) are
implemented, except variable-length strings (NC_STRING). User defined
data types (compound, vlen, enum etc.) are not supported.

WWW:  http://code.google.com/p/netcdf4-python/

PR:		ports/131866
Submitted by:	wenheping at gmail.com
 2009-02-23 20:18:45 +00:00
Martin Matuska
24bf28eff1 - Change default Tcl/Tk version to 8.5 
- Bump PORTVERSION of ports affected

Tested by:	pointyhat (pav)
 2009-02-23 14:46:37 +00:00
Gerald Pfeifer
a8277dd6f7 Mark unconditionally BROKEN, EXPIRATION_DATE=2009-03-22. 
Suggested by:	pav
 2009-02-22 01:31:20 +00:00
Max Brazhnikov
5f6ba2a345 Use my @FreeBSD.org email for the rest of my ports 2009-02-21 11:31:28 +00:00
Marcelo Araujo
baa19e0df7 - Mark as UNBROKEN on AMD64. 
- It isn't necessary to use USE_FORTRAN.
 2009-02-20 01:35:46 +00:00
Marcelo Araujo
ef56a06c67 - Mark as BROKEN, both doesn't compile on amd64. 
Reported by:	pav (pointyhat)
 2009-02-19 11:48:13 +00:00
Maho Nakata
b69dbd7d34 Fix build with gcc43. 
Spotted by pav
 2009-02-17 07:25:59 +00:00
Maho Nakata
1e01e4ebe1 Fix build with gcc43. 
Spotted by:	pav
 2009-02-14 08:36:17 +00:00
Maho Nakata
553c7e3cbe Fix build with gcc43. 
Fix obtained from
http://www.bioinformatics.org/pipermail/ghemical-devel/2008-August/000752.html
http://www.bioinformatics.org/pipermail/ghemical-devel/2008-July/000742.html
.

Spotted by:	pav
 2009-02-14 08:07:13 +00:00
Wesley Shields
6ce638fdbf - Pass maintainership along. 2009-02-13 15:25:26 +00:00
Martin Matuska
c5e1202db4 - Update ImageMagick to 6.4.9.2 
- Libraries Magick++, MagickCore and MagickWand bumped to 2
- Update all ports using libraries above
 2009-02-10 19:50:55 +00:00
Gerald Pfeifer
44e552f824 Mark BROKEN. 2009-02-07 16:38:30 +00:00
Gerald Pfeifer
602f4b65f3 No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now done via 
Mk/bsd.gcc.mk.

Remove trailing whitespace to appease portlint.
 2009-02-07 15:11:31 +00:00
Gerald Pfeifer
35753a5a81 Remove obsolete comment. 
Approved by:	thierry
 2009-02-02 10:54:21 +00:00
Maho Nakata
1fffaf7887 Update to 1.1.4 
Suggested by: pav@
 2009-02-02 02:53:05 +00:00
Chin-San Huang
de1b6f6c07 - Update to 1.3.0 
- Enable HDF5 1.8, netCDF 4 and proj by default
- Reformat Makefile

PR:		ports/130720
Submitted by:	sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
 2009-02-01 09:54:29 +00:00
Pav Lucistnik
1e05a3718b - Distfile rerolled with minor change to configure script 
- Update download location

Reported by:	-fetch-original pointyhat run
 2009-01-30 22:25:07 +00:00
Pav Lucistnik
e93c59188a - Update download location, update WWW 
Reported by:	-fetch-original pointyhat run
 2009-01-30 21:15:33 +00:00
Beat Gaetzi
72329eb351 Update my email address to @FreeBSD.org. 
Approved by:	miwi (mentor)
 2009-01-28 23:25:21 +00:00