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Author SHA1 Message Date
Sunpoet Po-Chuan Hsieh
921ac1cabd Update to 1.999815 
Changes:	https://metacpan.org/changes/distribution/Math-BigInt
 2018-10-20 14:49:52 +00:00
Jan Beich
d1e253310c math/libqalculate: unbreak with ICU 63 
In file included from Calculator.cc:45:
In file included from /usr/local/include/unicode/ucasemap.h:25:
/usr/local/include/unicode/localpointer.h:221:40: error: expected ';' at end of declaration list
    LocalPointer(LocalPointer<T> &&src) U_NOEXCEPT : LocalPointerBase<T>(src.ptr) {
                                       ^
/usr/local/include/unicode/localpointer.h:366:36: error: expected ';' at end of declaration list
    LocalArray(LocalArray<T> &&src) U_NOEXCEPT : LocalPointerBase<T>(src.ptr) {
                                   ^
In file included from Calculator.cc:45:
/usr/local/include/unicode/ucasemap.h:96:1: error: expected ';' at end of declaration list
U_DEFINE_LOCAL_OPEN_POINTER(LocalUCaseMapPointer, UCaseMap, ucasemap_close);
^
/usr/local/include/unicode/localpointer.h:493:60: note: expanded from macro 'U_DEFINE_LOCAL_OPEN_POINTER'
        LocalPointerClassName(LocalPointerClassName &&src) U_NOEXCEPT \
                                                           ^
/usr/local/include/unicode/platform.h:503:23: note: expanded from macro 'U_NOEXCEPT'
 #   define U_NOEXCEPT noexcept
                       ^

Regressed by:	https://github.com/unicode-org/icu/commit/35ce5296c1d3
PR:		232300
Reported by:	antoine (via exp-run)
 2018-10-19 19:26:58 +00:00
Yuri Victorovich
f2e53d6fb8 math/py-spot: Update 2.6.2 -> 2.6.3 
Reported by:	portscout
 2018-10-19 04:59:29 +00:00
Yuri Victorovich
bf87da7f6c math/py-yt: Update 3.4.1 -> 3.5.0 
Reported by:	portscout
 2018-10-19 04:42:29 +00:00
Yuri Victorovich
68c24312e8 math/spot: Update 2.6.2 -> 2.6.3 
Reported by:	portscout
 2018-10-18 22:27:28 +00:00
Yuri Victorovich
a0e7adfa1a math/py-pyodesys: Update 0.12.3 -> 0.12.4 
Reported by:	portscout
 2018-10-18 21:34:12 +00:00
Wen Heping
edd7fc12f4 - Update to 0.7.7 2018-10-18 03:27:17 +00:00
Wen Heping
320215dfe9 - Update to 3.34 2018-10-15 09:22:24 +00:00
Fernando Apesteguía
26166510af math/cddlib: strip .so objects 
Reported by:	mat@
 2018-10-14 20:41:33 +00:00
Steve Wills
5a9c01db67 math/py-pandas: Update to 0.23.4 
PR:		232252
Submitted by:	John W. O'Brien <john@saltant.com> (maintainer)
 2018-10-14 18:46:09 +00:00
Yuri Victorovich
a009e6c779 math/atlas: Fix build by removing empty directories 
It was installing some empty directories under DATADIR which PORTDATA=* doesn't handle.
 2018-10-14 18:07:46 +00:00
Yuri Victorovich
31448b1255 math/vtk8: Fix build with GCC-based architectures 
Add USES=compiler:c++11-lang
Also add USES=gl

PR:		232250
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
 2018-10-14 16:23:09 +00:00
Yuri Victorovich
270e4131a6 math/py-scikit-umfpack: Update 0.3.1 -> 0.3.2 
Reported by:	portscout
 2018-10-14 03:43:37 +00:00
Yuri Victorovich
d8352b0ef4 math/libmesh: Update 1.3.0 -> 1.3.1 
Reported by:	portscout
 2018-10-13 20:52:26 +00:00
Fernando Apesteguía
051ef09981 math/cddlib: Fix permissions for .so files 
* Use COPYTREE_SHARE instead of COPYTREE_BIN
* Bump PORTREVISION

Reported by:	adamw@
Approved by:	tcberner (mentor, implicit)
 2018-10-13 17:45:42 +00:00
Fernando Apesteguía
d121c9645e New port: math/cddlib 
C implementation of the Double Description Method of Motzkin et al

PR:	231161
Submitted by:	phascolarctos@protonmail.ch
Reviewed by:	tcberner (mentor, implicit)
Differential Revision:	https://reviews.freebsd.org/D17385
 2018-10-13 16:29:45 +00:00
Yuri Victorovich
7d1ef76b3f math/deal.ii: 9.0.0 -> 9.0.1 
Build succeeds on 11, but fails on 10 and 12 due to the boost bug.[1][2]

--References--
[1] https://github.com/dealii/dealii/issues/7344
[2] https://github.com/boostorg/serialization/pull/105

Reported by:	portscout
 2018-10-13 05:56:12 +00:00
Yuri Victorovich
aefd6c9622 math/mppp: Update 0.11 -> 0.12 
Reported by:	portscout
 2018-10-13 05:53:42 +00:00
Sunpoet Po-Chuan Hsieh
dfcee3d6bb Update to 1.3005 
Changes:	https://metacpan.org/changes/distribution/Math-BigInt-Pari
 2018-10-12 20:00:06 +00:00
Sunpoet Po-Chuan Hsieh
ca92ae60cc Update to 1.6006 
Changes:	https://metacpan.org/changes/distribution/Math-BigInt-GMP
 2018-10-12 19:59:58 +00:00
Sunpoet Po-Chuan Hsieh
fabaa9cbd5 Update to 0.5008 
Changes:	https://metacpan.org/changes/distribution/Math-BigInt-FastCalc
 2018-10-12 19:59:50 +00:00
Sunpoet Po-Chuan Hsieh
acd93a5741 Update to 1.999814 
Changes:	https://metacpan.org/changes/distribution/Math-BigInt
 2018-10-12 19:59:42 +00:00
Antoine Brodin
89b4379a17 Deprecate most glib12 consumers 
With hat:	portmgr
 2018-10-12 09:19:04 +00:00
TAKATSU Tomonari
bedb0a07a9 - Update to 0.99.14.12 2018-10-12 03:18:42 +00:00
Yuri Victorovich
483d58244a New port: math/py-primme: PRIMME wrapper for Python 2018-10-12 01:55:30 +00:00
Yuri Victorovich
12bf9e2a1a math/primme: Update to the latest revision; Add LinAlg options 
Port changes:
* Remove do-install: it is now implemented by the project
* Add options to choose the LAPACK-compatible interface for liner algebra
 2018-10-12 01:11:47 +00:00
Wen Heping
f2385030f2 - Update to 0.51 
Changes: https://metacpan.org/changes/distribution/bignum
 2018-10-11 23:59:57 +00:00
Tobias C. Berner
d847d05617 Update KDE Applications to 18.08.2 2018-10-11 20:23:50 +00:00
Ganael LAPLANCHE
e20bbea618 Update devel/tbb to version 2019.1 and bump dependent ports' revisions 
Also, reintegrate HTML documentation that was removed in previous version.
 2018-10-11 14:47:13 +00:00
Alex Dupre
289628333c Update to latest snapshot. 2018-10-11 08:16:57 +00:00
Jan Beich
05f71ba48e math/fftw3: drop FreeBSD 11.1 support per EOL 
PR:		220590 (for tracking)
 2018-10-10 21:44:41 +00:00
Yuri Victorovich
ece2f583bc math/primme: Update 2.1 -> 2.1.20181010 (current revision) 
Several relevant bugs were fixed:
* SONAME was added
* Some patches aren't needed now
 2018-10-10 19:19:19 +00:00
Sunpoet Po-Chuan Hsieh
c6a0ac4ab3 Update to 0.4 
Changes:	https://metacpan.org/changes/distribution/Math-Base85
 2018-10-10 10:24:00 +00:00
Sunpoet Po-Chuan Hsieh
2c9abf6601 Fix *_DEPENDS 
- Bump PORTREVISION for dependency change
 2018-10-10 10:23:52 +00:00
TAKATSU Tomonari
2c376fc3a4 - Update to 1.2.1 2018-10-10 10:13:08 +00:00
Yuri Victorovich
42f9374eed New port: math/mfem: Lightweight, general, scalable C++ library for finite element methods 2018-10-10 07:28:57 +00:00
Sunpoet Po-Chuan Hsieh
6c74afdba2 Add LICENSE 2018-10-10 06:43:35 +00:00
TAKATSU Tomonari
2907c790b0 - Update to 0.7-9 2018-10-10 02:57:04 +00:00
Antoine Brodin
12a1903e19 Remove py-gau2grid, new broken port 
Reported by:	pkg-fallout
 2018-10-09 20:45:44 +00:00
Wen Heping
6ad4682ce9 - Update to 0.19.2 2018-10-09 12:08:01 +00:00
Yuri Victorovich
74fa1be30b New port: math/primme: Iterative eigensolver for symmetric and hermitian matrices 2018-10-09 08:24:02 +00:00
Wen Heping
87e1b3bc34 - Update to 3.0701 
Changes: https://metacpan.org/changes/distribution/Statistics-Descriptive
 2018-10-09 06:25:23 +00:00
Wen Heping
e54e83523a - Update to 1.0000 
Changes: https://metacpan.org/changes/distribution/Statistics-ChiSquare
 2018-10-09 06:17:26 +00:00
Wen Heping
973559264c - Update to 1.6611 
Changes: https://metacpan.org/changes/distribution/Statistics-Basic
 2018-10-09 06:13:08 +00:00
Wen Heping
7f7f8be1a7 - Update to 0.08 
Changes: https://metacpan.org/changes/distribution/GIS-Distance-Fast
- Update DEPENDS
 2018-10-09 06:07:03 +00:00
Yuri Victorovich
fa50be6457 science/hypre: Update 2.11.2 -> 2.15.0 
Port changes:
* Move to GitHub
* Add the NOMPI option
* Update WWW
 2018-10-09 01:26:30 +00:00
Antoine Brodin
3f14fbb2c0 Fix some PKGNAME collisions 2018-10-08 15:08:13 +00:00
Torsten Zuehlsdorff
b4100a4c15 Connect all the PHP 7.3 ports 2018-10-08 09:31:09 +00:00
Torsten Zuehlsdorff
3a5533b48d Add PHP 7.3 RC2 to the ports-tree. 
Notable changes:
- Switch from PCRE to PCRE2
- Many modules now require PCRE2 for building
- graphics/php73-gd: X11 option is no longer default

Changes to Mk/Uses/php.mk approved by ale
 2018-10-08 08:52:51 +00:00
Wen Heping
92ce6e4922 - Update to 2.2.4 
PR:		231997
Submitted by:	neel@neelc.org(maintainer)
 2018-10-08 07:30:31 +00:00
Antoine Brodin
95e220d1be Deprecate some GNOME 2 applications 
With hat:	portmgr
 2018-10-07 20:25:16 +00:00
Greg Lewis
7091bd92e7 . Update to 5.2.5 2018-10-07 16:27:57 +00:00
Greg Lewis
979e0eab0d . Update to 5.2.5 2018-10-07 16:24:24 +00:00
Kubilay Kocak
1cdacd51a9 math/py-graphillion: Update to 1.2 
This version fixes build failures on FreeBSD versions that use Clang 6:

src/graphillion/zdd.cc:461:31: error: invalid operands to binary expression ('std::__1::ostream' (aka 'basic_ostream<char>') and 'std::__1::ostream')
  if (out == std::cout || out == std::cerr)
                          ~~~ ^  ~~~~~~~~~

Reported by:	pkg-fallout
MFH:		2018Q4
 2018-10-07 09:57:10 +00:00
Yuri Victorovich
97bae065a6 New port: math/py-gau2grid: Fast computation of a gaussian and its derivative on a grid 2018-10-07 04:26:11 +00:00
Yuri Victorovich
d2ce28b732 math/deal.ii: Fix build by disabling the MPI option; Add several other options for various libraries 
Also add boost dependency

Reported by:	fallout (breakage)
 2018-10-06 21:17:44 +00:00
Yuri Victorovich
72a064eaf5 Remove math/arpack: math/arpack-ng should be used instead 2018-10-06 17:55:35 +00:00
Dag-Erling Smørgrav
9dff352320 Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
 2018-10-06 13:06:42 +00:00
Sunpoet Po-Chuan Hsieh
d12b6eff01 Update MASTER_SITES and WWW 2018-10-06 09:24:38 +00:00
Yuri Victorovich
30c1eda7b0 math/arpack-ng: Install headers 
As it turned out, --enable-icb triggers the build to install the headers.
Also properly strip the libraries.
 2018-10-06 04:16:10 +00:00
Stephen Montgomery-Smith
08ed6f0c66 - Update to 2.7.1. 2018-10-06 01:02:01 +00:00
Yuri Victorovich
b73f018b9c cad/calculix-ccx math/arpack++ math/armadillo math/scilab math/octave: Change dependency from math/arpack to math/arpack-ng 
math/arpack is a dead, unmaintained project, and math/arpack-ng is a maintained and updated fork.
This commit is effectively a version upgrade of the arpack dependency.

Approved by:	portmgr blanket (does not result in a change in contents of the resulting package)
 2018-10-05 05:24:46 +00:00
Yuri Victorovich
447644ce22 Delete math/arpack-ng-mpich from Makefile; Add the record to MOVED 
Deletion was previously forgotten.

Reported by:	mayhem30@gmail.com
 2018-10-05 03:43:17 +00:00
Yuri Victorovich
44693112e9 math/arpack-ng: Correction 2018-10-04 20:51:43 +00:00
Yuri Victorovich
7fe6edd387 math/arpack-ng: Update 3.5.0 -> 3.6.3 
Port changes:
* Remove the slave port math/arpack-ng-mpich: the MPI option is incremental and only adds a library
* Permanently enable the MPI functionality: see above
* Shorten the CONFLICTS statement
* Install arpack.h which is forgotten by the project itself

Bump cad/elmerfem: dependency there changed to math/arpack-ng.
 2018-10-04 20:44:52 +00:00
Sunpoet Po-Chuan Hsieh
db97887e21 Update to 1.15.1 
- Change MASTER_SITES to CHEESESHOP
- Use bsd.port.mk instead of bsd.port.pre.mk + bsd.port.post.mk

Changes:	https://github.com/numpy/numpy/releases
PR:		231664
Exp-run by:	antoine
 2018-10-04 18:14:16 +00:00
Yuri Victorovich
6b2f304bcd math/arpack-ng: Take maintainership 
I will update it, and replace all dependencies in other ports from math/arpack to math/arpack-ng
because math/arpack is dead, and math/arpack-ng is a drop-in replacement and is maintained and developed.
 2018-10-04 17:31:43 +00:00
Ganael LAPLANCHE
c05d3b7d2f Update devel/tbb to version 2019 and bump dependent port's revisions 2018-10-04 10:03:59 +00:00
Dmitry Marakasov
fb6c4248bc - Add LICENSE 
- Add NO_ARCH
- Cleanup pkg-descr

Approved by:	portmgr blanket
 2018-10-04 09:08:36 +00:00
Yuri Victorovich
4be3726b57 New port: math/adol-c: Automatic differentiation library 2018-10-04 07:23:06 +00:00
Yuri Victorovich
6b5949269b New port: math/nanoflann: Header-only library for Nearest Neighbor (NN) search with KD-trees 2018-10-04 03:53:55 +00:00
Yuri Victorovich
a44229b5cf New port: math/deal.ii: Finite element Differential Equations Analysis Library (DEAL) 
The official name of the project is deal.II
 2018-10-03 07:41:14 +00:00
Yuri Victorovich
1e7103688e science/PETSc: Update 3.9.4->3.10.1; math/py-petsc4py: Update 3.9.1->3.10.0; math/slepc: Update 3.9.2->3.10.0; math/py-slepc4py: Update 3.9.0->3.10.0 
Bump math/sundials and math/petiga.
On commit because they depend on each other and don't build unless versions match.
 2018-10-02 23:11:15 +00:00
Mark Felder
bf44443d13 Reset maintainer on my python ports 2018-10-02 19:06:16 +00:00
Baptiste Daroussin
83d49e123a Update to 0.8.3 2018-10-02 09:41:24 +00:00
Antoine Brodin
b8796f0d82 Cleanup plists 2018-10-01 09:36:38 +00:00
Dmitry Marakasov
2d9810fc01 - Add LICENSE 
- Add NO_ARCH
- Cleanup pkg-descr

Approved by:	portmgr blanket
 2018-10-01 09:08:31 +00:00
Koop Mast
951c1f5d1c The FreeBSD GNOME team proudly presents GNOME 3.28 for FreeBSD. 
The offical GNOME 3.28 release notes can be found at
https://help.gnome.org/misc/release-notes/3.28/

Thanks to Antoine Brodin for running the exp-runs.

PR:		229761
 2018-09-30 11:58:29 +00:00
Yuri Victorovich
39a8be998e math/py-spot: Update 2.6.1 -> 2.6.2 
Reported by:	portscout
 2018-09-30 01:58:57 +00:00
Yuri Victorovich
6f41b196a3 math/spot: Update 2.6.1 -> 2.6.2 
Reported by:	portscout
 2018-09-30 01:58:21 +00:00
Wen Heping
6e980f58a1 - Update to 2.2.5.6 2018-09-29 03:24:49 +00:00
Diane Bruce
c2d4bf63db Fix build on i386 and aarch64 by enabling -fPIC 
Tested on poudriere i386 and amd64 tested build on RPi3

PR:		214864
Reported by:	@emaste
 2018-09-28 23:20:20 +00:00
Rene Ladan
2dfde0455b Remove expired ports: 
2018-09-25 math/mtl: fails to fetch: mastersite times out
2018-09-25 dns/dnscrypt-proxy: Deprecated by upstream, use dns/dnscrypt-proxy2 instead
 2018-09-27 09:00:13 +00:00
Antoine Brodin
c21bcb1b28 Mark BROKEN: conflicting dependencies 
Reported by:	pkg-fallout
 2018-09-27 05:28:49 +00:00
Yuri Victorovich
26ef17848f math/py-pyhull: Update 2015.2.0 -> 2015.2.1 
Reported by:	portscout
 2018-09-27 03:13:34 +00:00
Brooks Davis
3a34ffa58f Update Objective-C LLVM version to 6.0. 
Fixes aarch64 build.  Reduces depends on obsolete LLVM 4.0.

PR:		230116
Submitted by:	mikael.urankar@gmail.com
Approved by:	theraven (prior version)
Sponsored by:	DARPA, AFRL
 2018-09-26 15:23:37 +00:00
Wen Heping
64f3b61585 - Fix build with powerpc64 
(Patches that fix ARM architectures break powerpc64. Fix this by applying ARM-related patches only on ARM.)

PR:		231553
Submitted by:	pkubaj@anongoth.pl
 2018-09-26 06:36:20 +00:00
TAKATSU Tomonari
2d281cb0df - Update to 0.999-3 2018-09-26 06:19:44 +00:00
Stephen Montgomery-Smith
b7cd4a49a7 - Update to 0.5.2. 2018-09-26 00:59:08 +00:00
Jason E. Hale
df1e980728 Fix build on powerpc64 
Add USES=gnome

PR:		231723
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
Sponsored by:	IntegriCloud
 2018-09-25 23:23:13 +00:00
Koop Mast
cc3cc974fe Update gnumeric to 1.12.43. 
PR:		221450 (based on)
Submitted by:	lightside <lightside@gmx.com>
 2018-09-25 20:20:24 +00:00
TAKATSU Tomonari
4f2d743239 - Update to 0.6-1 2018-09-25 10:44:45 +00:00
Dmitry Marakasov
15bf42f026 - Add LICENSE 
Approved by:	portmgr blanket
 2018-09-25 09:08:29 +00:00
TAKATSU Tomonari
0a1b1add2b - Update to 0.93-3 2018-09-25 07:48:46 +00:00
Mark Linimon
b54b77fa86 These ports now build on powerpc64. 
While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
 2018-09-25 07:29:25 +00:00
TAKATSU Tomonari
6f4976e713 - Update to 1.8-4 2018-09-25 05:55:03 +00:00
Yuri Victorovich
2edcaf156a math/py-cyipopt: Update 0.1.8 -> 0.1.9 
Reported by:	upstream
 2018-09-24 17:34:50 +00:00
Dmitry Marakasov
c0a9072a7d - Add LICENSE 
- Add NO_ARCH

Approved by:	portmgr blanket
 2018-09-24 09:08:28 +00:00
David Naylor
e95828dcdb math/R-cran-forcats: Tools for Working with Categorical Variables (Factors) 
Generated by:	portcran (0.1.8)
 2018-09-24 07:12:05 +00:00
Yuri Victorovich
4d98780977 math/py-CyLP: Correct PORTNAME. 2018-09-23 20:09:36 +00:00
Yuri Victorovich
c37b1dce49 New port: math/py-CyLP: Python interface to CLP, CBC, and CGL to solve LPs and MIPs 2018-09-23 20:02:46 +00:00
Yuri Victorovich
9c555f8ae6 math/py-cyipopt: Update 0.1.7 -> 0.1.8 
Reported by:	portscout
 2018-09-23 19:16:23 +00:00
TAKATSU Tomonari
5b933ea8fa - Update to 1.3.3 2018-09-23 10:28:22 +00:00
Mark Linimon
e71643e723 Fix build on gcc-bases archs. 
PR:		231558
Submitted by:	Piotr Kubaj
Approved by:	portmgr (tier-2 blanket)
 2018-09-23 05:12:55 +00:00
Mark Linimon
1b69c21022 Fix build on gcc-bases archs. 
Also tested on amd64.

PR:		231505
Submitted by:	Piotr Kubaj
Approved by:	portmgr (tier-2 blanket)
 2018-09-23 05:07:13 +00:00
Gleb Popov
db8c5aa67e math/z3: Add compiler:c++11-lang to USES. 
PR:		231604
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
Approved by:	tcberner (mentor)
 2018-09-22 20:31:22 +00:00
Yuri Victorovich
44b1477994 math/SoPlex: fix build on GCC-based architectures 
Add USES=compiler:c++11-lang

PR:		231598
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
 2018-09-22 18:43:30 +00:00
Yuri Victorovich
fbdb8def9f Change 4 ports from net/mpich2 to net/mpich 
mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

Ports:
biology/phyml benchmarks/mdtest benchmarks/imb math/parmetis
 2018-09-22 18:00:24 +00:00
Yuri Victorovich
607fe7ab86 Change 10 ports from net/mpich2 to net/mpich 
mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

science/triqs science/PETSc math/py-slepc4py math/slepc math/py-petsc4py
math/petiga math/sundials cad/elmerfem math/blocksolve95 math/spooles
 2018-09-22 17:40:41 +00:00
Yuri Victorovich
be88507da6 math/petiga: Add the xplanation to pkg-descr 2018-09-22 17:37:45 +00:00
Yuri Victorovich
5f341a2ffb Change 20 ports from net/mpich2 to net/mpich 
mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

Ports:
math/scalapack science/nwchem science/quantum-espresso science/qmcpack science/madness
science/qbox science/openmx science/jdftx science/fleur science/libgridxc
science/mdynamix science/lm science/dftbplus science/py-gpaw devel/ga
math/elpa net/charm science/gromacs math/pari math/arpack-ng-mpich
 2018-09-22 16:36:38 +00:00
Mark Linimon
aecf049634 Fix build on gcc-based archs by updating USES. 
Tested on powerpc64 and amd64 (for no regression).

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
 2018-09-22 05:30:31 +00:00
Yuri Victorovich
35da913a9d math/py-pygslodeiv2: Add tests 2018-09-21 19:40:05 +00:00
Yuri Victorovich
fa0dc38af5 math/py-pyodesys: Add tests; Add EXTRAS option for extra-dependencies 2018-09-21 16:43:54 +00:00
Yuri Victorovich
f647e7d24d math/py-fastdtw: Fix license 2018-09-21 15:11:39 +00:00
Yuri Victorovich
58d61c992c New port: math/py-fastdtw: Dynamic Time Warping (DTW) algorithm with an O(N) complexity 2018-09-21 08:25:54 +00:00
Koichiro Iwao
b4f3ed4d17 math/singular: add USES=ncurses warned by stage-qa 
Also,
* replace some hardcoded "/bin/bash" not been replaced with shebangfix

PR:		229864
Submitted by:	meta (myself)
Approved by:	maintainer timeout, pi (mentor)
 2018-09-21 06:30:15 +00:00
Yuri Victorovich
57abffa30e New port: math/py-gimmik: Generator of Matrix Multiplication Kernels 2018-09-20 21:48:56 +00:00
Yuri Victorovich
424b8f8dab New port: math/libxsmm: Library for dense and sparse matrix operations and deep learning 2018-09-20 17:44:47 +00:00
Yuri Victorovich
f4b64ae6b1 math/py-secp256k1: Remove test target and depends because tests aren't defined 
Revert my commit r480150 because tests only exist in the github version, but not in the CHEESESHOP version.

Approved by:	portmgr blanket
 2018-09-20 03:15:14 +00:00
Yuri Victorovich
7990ac3314 math/py-secp256k1: Add the missing do-test target 
Approved by:	portmgr blanket
 2018-09-20 01:22:59 +00:00
Yuri Victorovich
00cb497ba2 New port: math/py-pyodeint: Python binding for odeint from boost 2018-09-20 00:54:30 +00:00
Steve Wills
466d7fa68f math/ntl: fix build with powerpc64, reorder USES 
PR:		231429
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
Approved by:	Nathan <ndowens@yahoo.com> (maintainer)
 2018-09-20 00:00:29 +00:00
Yuri Victorovich
1558e3bfc4 New port: math/py-pygslodeiv2: Python binding for odeiv2 in GNU Scientific Library (GSL) 2018-09-19 23:11:35 +00:00
Yuri Victorovich
740e5c56be math/py-PuLP: Add USE_PYTHON=concurrent 2018-09-19 21:22:42 +00:00
Yuri Victorovich
594fe32030 New port: math/py-PuLP: LP modeler written in python 2018-09-19 20:39:09 +00:00
Yuri Victorovich
6a2d8bd6aa math/arb: Update 2.14.0 -> 2.15.0 
Reported by:	portscout
 2018-09-19 17:43:15 +00:00
Yuri Victorovich
32ae6ae6bf math/py-permutation: Update 0.1.0-2 -> 0.1.1 
Reported by:	portscout
 2018-09-19 17:41:53 +00:00
Steve Wills
7e10e181e3 math/py-seaborn: update to 0.9.0 
PR:		231319
Submitted by:	Shane <FreeBSD@ShaneWare.Biz> (maintainer)
 2018-09-18 18:54:55 +00:00
Ed Maste
b336e44854 math/z3: add -znotext to LDFLAGS on i386, for lld 
This port links some non-PIC code, which fails with lld as it defaults
to disallowing relocations against read-only segments. For i386 we can
just add -znotext unconditionally: for GNU BFD ld it just affirms BFD's
existing default.

PR:		214864
Approved by:	portmgr (lld blanket)
Sponsored by:	The FreeBSD Foundation
 2018-09-18 16:59:01 +00:00
Mark Linimon
2e7f27934a More precisely specify USES=compiler to fix build on gcc-based 
platforms such as powerpc64.

Tested on powerpc64, amd64.

Approved by:	portmgr (tier-2 blanket)
 2018-09-18 08:14:23 +00:00
Mark Linimon
1410a55375 Fix build on gcc-based archs such as powerpc64. I had already 
independently tested this patch before the PR came in.

PR:		231426
Submitted by:	pkubaj@anongoth.pl
Approved by:	portmgr (tier-2 blanket)
 2018-09-18 07:56:07 +00:00
Yuri Victorovich
7db682c395 math/py-chaospy: Update 2.3.4 -> 2.3.5 
Reported by:	portscout
 2018-09-18 07:42:57 +00:00
Yuri Victorovich
395e09bc03 math/py-rapi: Update 0.1.2 -> 0.1.3 
Reported by:	portscout
 2018-09-18 07:41:43 +00:00
TAKATSU Tomonari
d84700df18 - Update to 1.5-9 2018-09-18 07:38:01 +00:00
TAKATSU Tomonari
98ab7a4425 - Update to 0.2.9.4 2018-09-18 06:52:59 +00:00
TAKATSU Tomonari
0f68ee2ce1 - Update to 1.4-4 2018-09-18 05:34:24 +00:00
Yuri Victorovich
d3518320a6 math/py-pyodesys: Update 0.11.16 -> 0.12.3 2018-09-17 20:27:24 +00:00
Baptiste Daroussin
39e9c018fd Update to 0.8.2 2018-09-17 08:49:57 +00:00
Antoine Brodin
249453e869 Add an expiration date 2018-09-16 11:21:34 +00:00
Baptiste Daroussin
d137c8f2f8 Update to 0.8.0 2018-09-15 06:00:56 +00:00
Jan Beich
c1428de50b math/libmissing: back out r477151 
LLD (both 6 and 7) gained -z interpose support in base r338682.
 2018-09-14 16:47:48 +00:00
TAKATSU Tomonari
dd1f4ca305 - Update to 0.11-1 2018-09-14 03:01:15 +00:00
Sunpoet Po-Chuan Hsieh
601eebf274 Update to 0.13 
- Remove Perl core modules
- Strip shared library

Changes:	https://metacpan.org/changes/distribution/Geo-Distance-XS
 2018-09-12 22:56:58 +00:00
Brooks Davis
65a54783b1 Update llvm dependency (for 10.x support) to llvm60. 
PR:		231289
Approved by:	Greg V <greg@unrelenting.technology> (maintainer)
Sponsored by:	DARPA, AFRL
 2018-09-12 16:01:03 +00:00
Carlos J. Puga Medina
d1128daf4e - Use INSTALL_TARGET=install-strip instead of manual stripping 
- Fix 'present but cannot be compiled' warnings

PR:		231262
Submitted by:	avos
 2018-09-11 23:07:59 +00:00
Niclas Zeising
0fae2e9e0e Change x11/xorgproto to become a build dep 
Change x11/xorgproto to become a build time dependency when added to
USE_XORG.  Change the dependency to be on the port, rather than a file the
port installs.
Fix fallout.
Bump portrevision on depending ports.

PR:		230909
Reviewed by:	eadler
Approved by:	portmgr (antoine)
Obtained from:	https://github.com/FreeBSDDesktop/freebsd-ports/tree/feature/xorgproto
exp-run:	antoine
Differential Revision:	https://reviews.freebsd.org/D16906
 2018-09-11 18:34:27 +00:00
Li-Wen Hsu
e5f4ba50d9 Remove CLISP option, lang/clisp was removed in 2014 2018-09-11 15:51:35 +00:00
TAKATSU Tomonari
91c146e511 - Update to 0.99.14.11 2018-09-11 00:30:16 +00:00
Sunpoet Po-Chuan Hsieh
fbbe99c118 Add p5-Math-Prime-Util-GMP 0.51 
Math::Prime::Util::GMP is a module for number theory in Perl using GMP. This
includes primality tests, getting primes in a range, factoring, and more.

These use GMP directly, so should be quite fast for bignums. This module is
mainly intended to be used within Math::Prime::Util, but most functions can be
easily used in independent C programs. Some, like factoring and primality
proving, have explicit ways of compiling as standalone programs.

WWW: https://metacpan.org/release/Math-Prime-Util-GMP
 2018-09-10 20:26:08 +00:00
Sunpoet Po-Chuan Hsieh
633d642452 Add p5-Math-Prime-Util 0.71 
Math::Prime::Util is a module for number theory in Perl. This includes prime
sieving, primality tests, primality proofs, integer factoring, counts / bounds /
approximations for primes, nth primes, and twin primes, random prime generation,
and much more.

WWW: https://metacpan.org/release/Math-Prime-Util
 2018-09-10 20:25:41 +00:00
Dag-Erling Smørgrav
ce4762a648 Shorten comment. 2018-09-10 13:21:19 +00:00
Mathieu Arnold
cde7011950 Various cleanup & fixes post-DOCS/EXAMPLES cleanup. 
PR:		230864
Submitted by:	mat
exp-runs by:	antoine
 2018-09-10 13:16:16 +00:00
Mathieu Arnold
4a3bebcae1 Add EXAMPLES options to ports that should have one. 
Also various fixes related to said option.

PR:		230864
Submitted by:	mat
exp-runs by:	antoine
 2018-09-10 13:15:47 +00:00
Mathieu Arnold
e1bfdfbe56 Add DOCS options to ports that should have one. 
Also various fixes related to said option.

PR:		230864
Submitted by:	mat
exp-runs by:	antoine
 2018-09-10 13:14:50 +00:00
Dag-Erling Smørgrav
cded85f907 Reassign all of tobez@'s p5 ports to perl@. 
Approved by:	tobez
 2018-09-10 11:16:59 +00:00
Mathieu Arnold
052d10856a Remove ONLY_FOR_ARCHS_REASON_<arch> that are not architecture dependant. 2018-09-10 10:29:06 +00:00
Yuri Victorovich
b8441e0876 math/py-chaospy: Update 2.3.3 -> 2.3.4 
Reported by:	portscout
 2018-09-10 07:04:56 +00:00
Mark Linimon
7be0be3c94 Mark various ports broken on powerpc64. 
Approved by:	portmgr (tier-2 blanket)
 2018-09-10 02:06:12 +00:00
Yuri Victorovich
446d72208d math/mkl-dnn: Broken on i386: shift count >= width of type 2018-09-07 02:31:47 +00:00
Yuri Victorovich
fc2206a61e math/vtk8: Make Qt5 a default option. 
Reason: some other ports expect Qt5 option enabled in vtk.
Whilehere, change WWW URL to https.
 2018-09-06 22:18:27 +00:00
Adriaan de Groot
023390aaa6 Update the current KDE Applications to 18.08.1, the latest release. 
https://www.kde.org/announcements/announce-applications-18.08.1.php

The release notes mention a few dozen fixes, MTP doesn't crash when
concurrently accessed by another application, nothing critical.

Submitted by:	tcberner
 2018-09-06 21:06:47 +00:00
Johannes M Dieterich
790b4d631d new port: math/libpgmath 
This adds the compiler-callable math intrinsics library libpgmath. It is the
math library of the flang compiler with support for vector operations.

Patches were in large part adapted from the OpenBSD port.

Reviewed by:	zeising (mentor), mat
Approved by:	zeising (mentor)
Obtained from:	Brian Callahan (bcallah@openbsd.org) with adaptations
Differential Revision:	https://reviews.freebsd.org/D17034
 2018-09-06 20:06:40 +00:00
Johannes M Dieterich
fd6f984527 new port: math/sleef 
SLEEF is the SIMD Library for Evaluating Elementary Functions, vectorized libm
and DFT. It provides a vectorabi interface for vectorized libm.

Reviewed by:	zeising (mentor), mat
Approved by:	zeising (mentor)
Differential Revision:	https://reviews.freebsd.org/D17045
 2018-09-06 19:31:08 +00:00
Yuri Victorovich
66659c9d0d New port: math/py-chaospy: Toolbox for performing uncertainty quantification 2018-09-06 07:19:49 +00:00
Sunpoet Po-Chuan Hsieh
c548cd43e8 Update science/hdf5 to 1.10.2 
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://portal.hdfgroup.org/display/support/HDF5%201.10.2#releasenotes
		https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.2/src/hdf5-1.10.2-RELEASE.txt
PR:		231009
Exp-run by:	antoine
 2018-09-05 22:05:23 +00:00
Baptiste Daroussin
2fdb20442f Update to 0.7.9 2018-09-05 07:35:29 +00:00
Yuri Victorovich
84d7d93be3 New port: math/mkl-dnn: Intel(R) Math Kernel Library for Deep Neural Networks 2018-09-05 00:38:30 +00:00
Jason E. Hale
bfb19ceb3b - Update to 2.5.0 
- Add optional Cantor support
- Move options block downward
- Update WWW

Reviewed by:	mat, tcberner
Differential Revision:	https://reviews.freebsd.org/D16996
 2018-09-04 08:40:52 +00:00
Sunpoet Po-Chuan Hsieh
640ad64f46 Simplify Makefile: use PY_ENUM34 
With hat:	python
 2018-09-02 23:57:43 +00:00
Yuri Victorovich
57520aecef math/xtensor: Update 0.17.1 -> 0.17.3 
Reported by:	portscout
 2018-09-02 17:34:08 +00:00
Yuri Victorovich
0e42b31731 math/py-cvxopt: Update 1.2.0 -> 1.2.1 
Reported by:	portscout
 2018-09-01 15:48:10 +00:00
Yuri Victorovich
b3d4f192dd New port: math/py-rapi: Minimal R API for Python 2018-09-01 15:39:55 +00:00
Yuri Victorovich
0bda7f4a9b math/rpy2: Update 2.7.8 -> 2.9.4; Move to math/py-rpy2 
Port changes:
* Add LICENSE_FILE
* Update dependencies
* Support for python-2 is dropped
* Update WWW to https
 2018-09-01 14:55:42 +00:00
Tobias Kortkamp
d935d1c630 math/gri: Fix build with Clang 6 
query.cc:59:16: error: assigning to 'char *' from incompatible type 'char'
        def_word[0] = '\0';
                      ^~~~

http://beefy11.nyi.freebsd.org/data/head-i386-default/p478276_s338342/logs/errors/gri-2.12.23_6.log
 2018-09-01 10:36:35 +00:00
Wen Heping
7e33bddf0c Package DoE.base creates full factorial experimental designs and designs 
based on orthogonal arrays for (industrial) experiments. Additionally, it
provides utility functions for the class design, which is also used by
other packages for designed experiments.

WWW: https://CRAN.R-project.org/package=DoE.base

PR:		220062
Submitted by:	pfg@
 2018-09-01 03:34:24 +00:00
Wen Heping
aa5ae4df97 Additive partitions of integers. Enumerates the partitions, unequal partitions, 
and restricted partitions of an integer; the three corresponding partition
functions are also given. Set partitions are now included.

WWW: https://cran.r-project.org/web/packages/partitions/
 2018-09-01 02:48:35 +00:00
Wen Heping
42a722a69c polynom is a collection of functions to implement a class for univariate 
polynomial manipulations.

WWW: https://cran.r-project.org/web/packages/polynom/
 2018-09-01 02:25:22 +00:00
Fernando Apesteguía
d177d8bc64 devel/boehm-gc: update to 7.6.8 
ChangeLog: https://github.com/ivmai/bdwgc/releases/tag/v7.6.8

* Giving maintainership to yasu@utahime.org
* Bumping PORTREVISION for dependent ports

PR:	230577
Submitted by:	yasu@utahime.org
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D16704
 2018-08-31 18:27:13 +00:00
Wen Heping
b54de7e8e2 Provides number-theoretic functions for factorization, prime numbers, 
twin primes, primitive roots, modular logarithm and inverses, extended
GCD, Farey series and continuous fractions. Includes Legendre and Jacobi
symbols, some divisor functions, Euler's Phi function, etc.

WWW: https://cran.r-project.org/web/packages/numbers/
 2018-08-31 14:11:44 +00:00
Dmitry Marakasov
6b7736ac5d - Update WWW 
Approved by:	portmgr blanket
 2018-08-31 09:38:12 +00:00
Adriaan de Groot
b7cbbfac1f Deprecate KDE4 software in categories graphics-textproc. 
The last upstream release supporting KDE4 was 10 months ago,
  https://www.kde.org/announcements/announce-applications-17.08.3.php ,
and the kde@ team for FreeBSD has supported modern KDE (i.e.  KDE
Frameworks, Plasma 5 and KDE Applications) for 4 months. Give a 4
month deprecation period to allow users to switch over.

Also deprecated: multimedia/kmplayer-kde4 (permission from jhale@)
Not deprecated, need to contact maintainers:
  misc/krecipes-kde4
  net-im/kmess-kde4
  net/smb4k-kde4
  textproc/uim-kde4
 2018-08-30 18:23:24 +00:00
Yuri Victorovich
626f0d05eb New port: math/elpa: Eigenvalue soLver for Petaflop Applications 2018-08-29 22:03:23 +00:00
Yuri Victorovich
9ae1af4159 math/blaze: Update 3.3-430 -> 3.4 
Reported by:	repology
 2018-08-27 20:38:50 +00:00
Kurt Jaeger
4b138f8f3d math/p5-Math-ProvablePrime: Update 0.043 -> 0.045 
Relnotes:	https://metacpan.org/changes/distribution/Math-ProvablePrime
 2018-08-26 18:26:43 +00:00
Thomas Zander
ff02b29f46 Update to upstream release 1.0.1, fix build on 11.2 
Detailed submitter log:
- Update to 1.0.1
- Switched to Github
  - Has newest sources
- Updated WWW in pkg-desc
  - Current www doesn't exist
- Removed doc depends/build
  - Does not build/install
- Removed doxygen dir
  - Not needed/used

PR:		230833 [1], 230674 [2]
Submitted by:	ndowens@yahoo.com [1]
Reported by:	lantw44@gmail.com [2]
MFH:		2018Q3
 2018-08-25 10:16:16 +00:00
Tobias C. Berner
6517ccec6c Update KDE Applications to 18.08 
Changelog: https://www.kde.org/announcements/announce-applications-18.08.0.php
 2018-08-25 05:15:02 +00:00
TAKATSU Tomonari
b0da5ae558 - Update to 2.7-0 2018-08-24 06:07:43 +00:00
TAKATSU Tomonari
f8a4b5dc58 - Update to 2.5-0 2018-08-24 02:41:14 +00:00
TAKATSU Tomonari
1eb1e45350 - Update to 1.1-18-1 2018-08-24 02:04:53 +00:00
Wen Heping
c74c6dae63 - Update to 1.0.6 2018-08-23 07:09:31 +00:00
TAKATSU Tomonari
5e1923be7a - Update to 0.9.100.5.0 2018-08-23 04:56:59 +00:00
TAKATSU Tomonari
8fd4d3f098 - Update to 0.7-8 2018-08-23 00:43:09 +00:00
Dmitry Marakasov
6a018ba82e - Update WWW 
Approved by:	portmgr blanket
 2018-08-22 09:38:08 +00:00
TAKATSU Tomonari
bd78cc4028 - Update to 0.9-7 2018-08-22 08:35:14 +00:00
Wen Heping
c01fb388a3 - Update to 11.3.0 
PR:		230743
Submitted by:	ndowens@yahoo.com(maintainer)
 2018-08-22 03:12:04 +00:00
Rene Ladan
7526a10e45 Remove expired ports: 
2018-08-20 net/openmq: Broken for more than 5 months
2018-08-20 net/coda6_server: Broken for more than 5 months
2018-08-20 net/ceph-devel: Broken for more than 5 months
2018-08-20 java/jgrapht: Broken for more than 5 months
2018-08-20 mail/mutt14: mutt 1.4.x has been out of support for 10+ years use mail/mutt
2018-08-20 www/pydio: Broken for more than 5 months
2018-08-20 security/fastd-devel: Broken for more than 5 months
2018-08-20 security/fastd: Broken for more than 5 months
2018-08-20 devel/bhyve-vm-goagent: Broken for more than 5 months
2018-08-20 devel/cherivis-devel: Depends on broken and expiring cheritrace-devel
2018-08-20 devel/cheritrace-devel: Broken for more than 5 months
2018-08-20 devel/javolution: Broken for more than 5 months
2018-08-20 devel/bisoncpp: Depends on broken and expiring libbobcat
2018-08-20 databases/php5-pdo_cassandra: Broken for more than 5 months
2018-08-20 games/crafty-open-large: Broken for more than 5 months
2018-08-20 games/crafty-open-enormous: Broken for more than 5 months
2018-08-20 games/crafty-open-medium: Broken for more than 5 months
2018-08-20 math/jakarta-commons-math: Broken for more than 5 months
2018-08-20 math/hfst: Broken for more than 5 months
2018-08-20 math/octave-forge-communications: Broken for more than 5 months
2018-08-20 lang/v8-devel: Broken for more than 5 months
2018-08-20 sysutils/rubygem-fluentd010: Broken for more than 5 months
 2018-08-21 12:06:54 +00:00
Sunpoet Po-Chuan Hsieh
0012913143 Update to 2.6.8 
Changes:	https://github.com/pydata/numexpr/releases
		https://github.com/pydata/numexpr/blob/master/RELEASE_NOTES.rst
 2018-08-20 22:14:33 +00:00
Yuri Victorovich
0b9403bba8 math/py-networkx: Update 1.10 -> 2.1 
PR:		229815
Reported by:	jwb
Approved by:	dikshie@sfc.wide.ad.jp (maintainer)
 2018-08-20 07:39:32 +00:00
Yuri Victorovich
dd08cd9df4 New port: math/blazeiterative: Set of iterative linear system solvers for use with the Blaze library 2018-08-19 18:21:47 +00:00
Yuri Victorovich
1473bbf3b6 New port: math/blaze: C++ math library for dense and sparse arithmetic 2018-08-19 18:00:36 +00:00
Steve Wills
eb8ecc35b0 math/speedcrunch: remove uneeded depends 
PR:		230441
Submitted by:	Andrew Romanenko <melanhit@gmail.com>
Approved by:	mikael.urankar@gmail.com (maintainer)
 2018-08-19 14:38:46 +00:00
Kurt Jaeger
2f8afdcc51 math/sc-im: fix segmentation fault upon :wq 
- bug reported upstream as https://github.com/andmarti1424/sc-im/pull/280

PR:		227861
Submitted by:	Samy Mahmoudi <samy.mahmoudi@gmail.com>
Approved by:	bapt (maintainer timeout)
 2018-08-19 14:38:07 +00:00
Wen Heping
a2bc3de4e2 - Update to 1.4.2 
- Add missing DEPENDS
- Update WWW

PR:		230178
Submitted by:	ndowens@yahoo.com
Approved by:	mainatiner(timeout, > 20 days)
 2018-08-19 10:13:05 +00:00
Sunpoet Po-Chuan Hsieh
2d432d7f37 Update to 2.19 
Changes:	https://metacpan.org/changes/distribution/Math-GMP
 2018-08-18 20:42:17 +00:00
Thierry Thomas
9d8e41ec8b Upgrade Code_Aster to 13.6.0-1. 2018-08-18 08:51:53 +00:00
Yuri Victorovich
69de68239e math/py-PySCIPOpt: Update 2.0.0 -> 2.0.1 
Reported by:	portscout
 2018-08-17 08:08:05 +00:00
Yuri Victorovich
15f5e139b2 math/py-sym: Update 0.3.3 -> 0.3.4 
Reported by:	portscout
 2018-08-17 08:07:32 +00:00
Danilo Egea Gondolfo
93aba9bc89 - Update to 9.100.5 2018-08-16 15:40:15 +00:00
Steve Wills
b640d3b4cc math/ntl: Update to 11.2.1 
While here, assign maintainer

PR:		230490
Submitted by:	Nathan <ndowens@yahoo.com>
 2018-08-16 12:30:42 +00:00
Steve Wills
95d2e28f6d math/amath: update to 1.8.5 
PR:		230482
Submitted by:	Carsten Larsen <cs@innolan.net> (maintainer)
 2018-08-16 12:28:15 +00:00
Danilo Egea Gondolfo
3a5fd07d0f - Update to 9.100.4 2018-08-15 20:48:56 +00:00
Jan Beich
07639776b0 math/libmissing: unbreak with LLD 7 
ld: error: unknown -z value: interpose
cc: error: linker command failed with exit code 1 (use -v to see invocation)

PR:		214864 230355
Reported by:	antoine (via exp-run)
 2018-08-14 13:33:20 +00:00
Ruslan Makhmatkhanov
18802854ae math/py-numpy: update to 1.15.0 
- update to 1.15
- convert to autoplist
- follow upstream change from nose test framework to pytest

Release notes:
https://github.com/numpy/numpy/releases/tag/v1.15.0

PR:		230094
Submitted by:	wen
Exp-run by:     antoine
 2018-08-14 11:20:27 +00:00
Sunpoet Po-Chuan Hsieh
a1e50f1197 Update to 2.6.7 
Changes:	https://github.com/pydata/numexpr/releases
		https://github.com/pydata/numexpr/blob/master/RELEASE_NOTES.rst
 2018-08-13 18:20:00 +00:00
TAKATSU Tomonari
4e78ea6024 - Update to 1.6.3 2018-08-13 08:00:46 +00:00
TAKATSU Tomonari
a53638d117 - Update to 0.2.9.3 2018-08-12 22:22:09 +00:00
Yuri Victorovich
b2aaf2d765 math/xtensor: Unbundle xtl 
Also add devel/nlohmann-json as a dependency. It was missing.
 2018-08-12 16:43:32 +00:00
Stephen Montgomery-Smith
436c28e075 - Update math/octave to 4.4.1. 
- Bump portrevision for all octave-forge-* ports.
 2018-08-12 02:57:03 +00:00
Stephen Montgomery-Smith
bd3b03fe3f - Update to 3.1.3. 2018-08-12 01:10:57 +00:00
TAKATSU Tomonari
11818b9043 - Update to 0.7-1 2018-08-11 22:28:24 +00:00
Fernando Apesteguía
99fa4488ff math/glm: make it compile with GCC 7 
GCC 7 was set as default in r475856

math/glm doesn't recognize GCC 7.x as a valid compiler. Import changes from
dd48b56e44d699a022c69155c8672caacafd9e8a in upstream to update the list of
supported compilers.

As a side effect this makes cad/openvsp build again.

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D16650
 2018-08-11 15:51:13 +00:00
Danilo Egea Gondolfo
6f7073cd54 - Update to 8.600.1 2018-08-10 21:38:50 +00:00
Yuri Victorovich
7ba7fe7138 math/xtensor: Update 0.17.0 -> 0.17.1 
Reported by:	portscout
 2018-08-10 21:26:33 +00:00
Yuri Victorovich
58ed7a252e math/spot: Add USES=charsetfix, remove RM for lib/charset.alias 2018-08-10 21:24:45 +00:00
Gleb Popov
2b5ee65538 math/cryptominisat: Unbreak on aarch64. 
PR:		229724
Submitted by:	Greg V <greg@unrelenting.technology>
Approved by:	tcberner (mentor)
 2018-08-10 10:20:15 +00:00
Gleb Popov
19006ddb57 math/cryptominisat: Update to 5.6.3. 
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D16645
 2018-08-10 09:24:41 +00:00
TAKATSU Tomonari
c24d56707e - Update to 0.93-2 2018-08-10 04:16:31 +00:00
Fernando Apesteguía
7aaf865085 math/dynare: update to 4.5.6 
* Change PORTVERSION to DISTVERSION

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D16631
 2018-08-09 20:49:22 +00:00
TAKATSU Tomonari
13d48dc604 - Update to 1.2.2 
- Convert to option target helpers and simplify BROKEN definition
 2018-08-09 08:48:26 +00:00
Yuri Victorovich
16caa2c13e math/xtensor: Unsilence the command 
Reported by:	mat
 2018-08-09 08:15:13 +00:00
Jan Beich
0b055d47f2 devel/boost-*: update to 1.68.0 
- Switch to C++14 for libboost_system to support C++14 consumers

Changes:	http://www.boost.org/users/history/version_1_68_0.html
PR:		229569
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D16165
 2018-08-09 06:58:30 +00:00
Yuri Victorovich
e0c47eec82 math/py-pyodesys: Update 0.11.15 -> 0.11.16 
Reported by:	portscout
 2018-08-09 00:31:44 +00:00
Yuri Victorovich
fb88c0a6ad math/xtensor: Update 0.16.4 -> 0.17.0 
Port changes:
* Silence the command
* Update xtl to 0.4.13

Reported by:	portscout
 2018-08-08 23:12:12 +00:00
Yuri Victorovich
4a644c0bce math/ambit: Use llvm60 instead of llvm38 
PR:		230471
Submitted by:	brooks
 2018-08-08 23:06:15 +00:00
Jan Beich
d6707e9923 math/cadabra2: unbreak with libc++ 7 
In file included from core/PythonCdb.cc:25:
In file included from libs/pybind11/include/pybind11/stl.h:34:
/usr/include/c++/v1/experimental/optional:11:2: error: "<experimental/optional> has been removed. Use <optional> instead."

PR:		230355
Obtained from:	upstream (pybind11)
 2018-08-08 12:32:03 +00:00
Mathieu Arnold
c65d3bebfd Regular sorting of categories Makefiles. 
Sponsored by:	Absolight
 2018-08-08 12:26:27 +00:00
Vsevolod Stakhov
0e6fde0848 Update to 1.9.4 
PR:	230079
Submitted by:	yuri
 2018-08-08 11:05:52 +00:00
Yuri Victorovich
d7f0078caa math/sundials: Update 3.1.1 -> 3.1.2 
HYPRE and PETSC options are now incompatible with LAPACK.
 2018-08-07 08:27:03 +00:00
Kubilay Kocak
f0003a7cf9 math/py-pycosat: Update to 0.6.3 
Changelog:

  https://github.com/ContinuumIO/pycosat/blob/0.6.3/CHANGELOG
 2018-08-07 02:42:54 +00:00
Antoine Brodin
c6f9e961dc Attempt to unbreak ports depending on ipython 2018-08-06 11:23:41 +00:00
Stephen Montgomery-Smith
a3f877e0b0 - Update to 1.5.3. 2018-08-05 23:21:19 +00:00
Jan Beich
34f500b59a math/ceres-solver: rebuild after r476182 
$ make -C graphics/colmap
[...]
-- Found installed version of Eigen: /usr/local/share/eigen3/cmake
CMake Error at /usr/local/lib/cmake/Ceres/CeresConfig.cmake:88 (message):
  Failed to find Ceres - Found Eigen dependency, but the version of Eigen
  found (3.3.5) does not exactly match the version of Eigen Ceres was
  compiled with (3.3.4).  This can cause subtle bugs by triggering violations
  of the One Definition Rule.  See the Wikipedia article
  http://en.wikipedia.org/wiki/One_Definition_Rule for more details
Call Stack (most recent call first):
  /usr/local/lib/cmake/Ceres/CeresConfig.cmake:223 (ceres_report_not_found)
  CMakeLists.txt:72 (find_package)

Reported by:	pkg-fallout
 2018-08-05 17:34:56 +00:00
Yuri Victorovich
320e3e634a math/py-spot: Fix hardcoded python suffixes in plist: 36 -> %%PYTHON_SUFFIX%% 2018-08-05 06:46:12 +00:00
Yuri Victorovich
010edb9819 math/triangle: Add -DTRILIBRARY for the shared library build, otherwise some symbols aren't defined; Add shared library stripping 2018-08-05 05:10:50 +00:00
Yuri Victorovich
0ee4dde0d7 math/triangle: Add SONAME to the shared library 2018-08-05 01:23:35 +00:00
Yuri Victorovich
3b645af29d math/triangle: Install the header; build and install the shared library 
Reason: other packages expect headers/library.

Other port changes:
* Order the USExx section
* Simplify the test target
* Change WWW to https
 2018-08-05 00:44:37 +00:00
Yuri Victorovich
9570014a75 New port: math/py-spot: Python binding for 'Spot', the library for omega automata manipulation 2018-08-04 23:33:34 +00:00
Yuri Victorovich
39cfcd2f48 New port: math/spot: Library for omega automata manipulation and model checking 2018-08-04 23:30:58 +00:00
Yuri Victorovich
d3a9df70ed New port: math/zegrapher: Software for plotting mathematical objects 2018-08-03 05:05:08 +00:00