package allowing the following:
* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.
PR: ports/146564
Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
ports which makes possible the direct translation of Cabal package
descriptions to FreeBSD ports. It promises both easier addition and
maintenance for Cabal-based ports.
release can be found at http://library.gnome.org/misc/release-notes/2.30/ .
This release brings initial PackageKit support, Upower (replaces power
management part of hal), cuse4bsd integration with HAL and cheese, and a
faster Evolution.
Sadly GNOME 2.30.x will be the last release with FreeBSD 6.X support. This
will also be the last of the 2.x releases. The next release will be the
highly-anticipated GNOME 3.0 which will bring with it a new UI experience.
Currently, there are a few bugs with GNOME 2.30 that may be of note for our
users. Be sure to consult the UPGRADING note or the 2.30 upgrade FAQ at
http://www.freebsd.org/gnome/docs/faq230.html for specific upgrading
instructions, and the up-to-date list of known issues.
This release features commits by avl, ahze, bland, marcus, mezz, and myself.
The FreeBSD GNOME Team would like to thank Anders F Bjorklund for doing the
initual packagekit porting.
And the following contributors & testers for there help with this release:
Eric L. Chen
Vladimir Grebenschikov
Sergio de Almeida Lenzi
DomiX
walder
crsd
Kevin Oberman
Michal Varga
Pavel Plesov
Bapt
kevin
and ITetcu for two exp-run
PR: ports/143852
ports/145347
ports/144980
ports/145830
ports/145511
string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.
WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
connection table, such as that obtained by a 2D representation of the
molecule or from a SMILES string.
WWW: http://search.cpan.org/dist/Chemistry-3DBuilder/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net
string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.
WWW: http://search.cpan.org/dist/Chemistry-File-SMARTS/
PR: ports/145143
Submitted by: Steve Wills <steve at mouf.net>
