Commit graph

1204 commits

Author SHA1 Message Date
Yuri Victorovich
e0071402cb New port: math/dbcsr: Distributed Block Compressed Sparse Row matrix library 2018-10-31 21:49:24 +00:00
Yuri Victorovich
3c6cb08c46 New port: math/py-python-louvain: Louvain algorithm for community detection 2018-10-30 06:18:48 +00:00
Yuri Victorovich
25457eaa8a New port: math/dsdp: Implementation of interior-point method for semidefinite programming 2018-10-29 05:55:51 +00:00
David Naylor
63d8c7ef9f math/R-cran-haven: Import and Export 'SPSS', 'Stata' and 'SAS' Files
Generated by:	portcran (0.1.9)
2018-10-23 18:25:39 +00:00
Yuri Victorovich
ceaa2cafa4 New port: math/openmesh: Generic data structure for manipulating polygonal meshes 2018-10-22 05:15:14 +00:00
Yuri Victorovich
727a9693d4 New port: math/gau2grid: Fast computation of a gaussian and its derivative on a grid 2018-10-20 18:36:24 +00:00
Yuri Victorovich
8bd4af7af4 math/py-gau2grid: Undelete because it isn't broken
It isn't broken: it has a bug that it breaks on architectures other than amd64.
2018-10-20 18:04:42 +00:00
Fernando Apesteguía
d121c9645e New port: math/cddlib
C implementation of the Double Description Method of Motzkin et al

PR:	231161
Submitted by:	phascolarctos@protonmail.ch
Reviewed by:	tcberner (mentor, implicit)
Differential Revision:	https://reviews.freebsd.org/D17385
2018-10-13 16:29:45 +00:00
Yuri Victorovich
483d58244a New port: math/py-primme: PRIMME wrapper for Python 2018-10-12 01:55:30 +00:00
Yuri Victorovich
42f9374eed New port: math/mfem: Lightweight, general, scalable C++ library for finite element methods 2018-10-10 07:28:57 +00:00
Antoine Brodin
12a1903e19 Remove py-gau2grid, new broken port
Reported by:	pkg-fallout
2018-10-09 20:45:44 +00:00
Yuri Victorovich
74fa1be30b New port: math/primme: Iterative eigensolver for symmetric and hermitian matrices 2018-10-09 08:24:02 +00:00
Torsten Zuehlsdorff
b4100a4c15 Connect all the PHP 7.3 ports 2018-10-08 09:31:09 +00:00
Yuri Victorovich
97bae065a6 New port: math/py-gau2grid: Fast computation of a gaussian and its derivative on a grid 2018-10-07 04:26:11 +00:00
Yuri Victorovich
72a064eaf5 Remove math/arpack: math/arpack-ng should be used instead 2018-10-06 17:55:35 +00:00
Yuri Victorovich
447644ce22 Delete math/arpack-ng-mpich from Makefile; Add the record to MOVED
Deletion was previously forgotten.

Reported by:	mayhem30@gmail.com
2018-10-05 03:43:17 +00:00
Yuri Victorovich
4be3726b57 New port: math/adol-c: Automatic differentiation library 2018-10-04 07:23:06 +00:00
Yuri Victorovich
6b5949269b New port: math/nanoflann: Header-only library for Nearest Neighbor (NN) search with KD-trees 2018-10-04 03:53:55 +00:00
Yuri Victorovich
a44229b5cf New port: math/deal.ii: Finite element Differential Equations Analysis Library (DEAL)
The official name of the project is deal.II
2018-10-03 07:41:14 +00:00
Rene Ladan
2dfde0455b Remove expired ports:
2018-09-25 math/mtl: fails to fetch: mastersite times out
2018-09-25 dns/dnscrypt-proxy: Deprecated by upstream, use dns/dnscrypt-proxy2 instead
2018-09-27 09:00:13 +00:00
David Naylor
e95828dcdb math/R-cran-forcats: Tools for Working with Categorical Variables (Factors)
Generated by:	portcran (0.1.8)
2018-09-24 07:12:05 +00:00
Yuri Victorovich
c37b1dce49 New port: math/py-CyLP: Python interface to CLP, CBC, and CGL to solve LPs and MIPs 2018-09-23 20:02:46 +00:00
Yuri Victorovich
58d61c992c New port: math/py-fastdtw: Dynamic Time Warping (DTW) algorithm with an O(N) complexity 2018-09-21 08:25:54 +00:00
Yuri Victorovich
57abffa30e New port: math/py-gimmik: Generator of Matrix Multiplication Kernels 2018-09-20 21:48:56 +00:00
Yuri Victorovich
424b8f8dab New port: math/libxsmm: Library for dense and sparse matrix operations and deep learning 2018-09-20 17:44:47 +00:00
Yuri Victorovich
00cb497ba2 New port: math/py-pyodeint: Python binding for odeint from boost 2018-09-20 00:54:30 +00:00
Yuri Victorovich
1558e3bfc4 New port: math/py-pygslodeiv2: Python binding for odeiv2 in GNU Scientific Library (GSL) 2018-09-19 23:11:35 +00:00
Yuri Victorovich
594fe32030 New port: math/py-PuLP: LP modeler written in python 2018-09-19 20:39:09 +00:00
Sunpoet Po-Chuan Hsieh
fbbe99c118 Add p5-Math-Prime-Util-GMP 0.51
Math::Prime::Util::GMP is a module for number theory in Perl using GMP. This
includes primality tests, getting primes in a range, factoring, and more.

These use GMP directly, so should be quite fast for bignums. This module is
mainly intended to be used within Math::Prime::Util, but most functions can be
easily used in independent C programs. Some, like factoring and primality
proving, have explicit ways of compiling as standalone programs.

WWW: https://metacpan.org/release/Math-Prime-Util-GMP
2018-09-10 20:26:08 +00:00
Sunpoet Po-Chuan Hsieh
633d642452 Add p5-Math-Prime-Util 0.71
Math::Prime::Util is a module for number theory in Perl. This includes prime
sieving, primality tests, primality proofs, integer factoring, counts / bounds /
approximations for primes, nth primes, and twin primes, random prime generation,
and much more.

WWW: https://metacpan.org/release/Math-Prime-Util
2018-09-10 20:25:41 +00:00
Johannes M Dieterich
790b4d631d new port: math/libpgmath
This adds the compiler-callable math intrinsics library libpgmath. It is the
math library of the flang compiler with support for vector operations.

Patches were in large part adapted from the OpenBSD port.

Reviewed by:	zeising (mentor), mat
Approved by:	zeising (mentor)
Obtained from:	Brian Callahan (bcallah@openbsd.org) with adaptations
Differential Revision:	https://reviews.freebsd.org/D17034
2018-09-06 20:06:40 +00:00
Johannes M Dieterich
fd6f984527 new port: math/sleef
SLEEF is the SIMD Library for Evaluating Elementary Functions, vectorized libm
and DFT. It provides a vectorabi interface for vectorized libm.

Reviewed by:	zeising (mentor), mat
Approved by:	zeising (mentor)
Differential Revision:	https://reviews.freebsd.org/D17045
2018-09-06 19:31:08 +00:00
Yuri Victorovich
66659c9d0d New port: math/py-chaospy: Toolbox for performing uncertainty quantification 2018-09-06 07:19:49 +00:00
Yuri Victorovich
84d7d93be3 New port: math/mkl-dnn: Intel(R) Math Kernel Library for Deep Neural Networks 2018-09-05 00:38:30 +00:00
Yuri Victorovich
b3d4f192dd New port: math/py-rapi: Minimal R API for Python 2018-09-01 15:39:55 +00:00
Yuri Victorovich
0bda7f4a9b math/rpy2: Update 2.7.8 -> 2.9.4; Move to math/py-rpy2
Port changes:
* Add LICENSE_FILE
* Update dependencies
* Support for python-2 is dropped
* Update WWW to https
2018-09-01 14:55:42 +00:00
Wen Heping
7e33bddf0c Package DoE.base creates full factorial experimental designs and designs
based on orthogonal arrays for (industrial) experiments. Additionally, it
provides utility functions for the class design, which is also used by
other packages for designed experiments.

WWW: https://CRAN.R-project.org/package=DoE.base

PR:		220062
Submitted by:	pfg@
2018-09-01 03:34:24 +00:00
Wen Heping
aa5ae4df97 Additive partitions of integers. Enumerates the partitions, unequal partitions,
and restricted partitions of an integer; the three corresponding partition
functions are also given. Set partitions are now included.

WWW: https://cran.r-project.org/web/packages/partitions/
2018-09-01 02:48:35 +00:00
Wen Heping
42a722a69c polynom is a collection of functions to implement a class for univariate
polynomial manipulations.

WWW: https://cran.r-project.org/web/packages/polynom/
2018-09-01 02:25:22 +00:00
Wen Heping
b54de7e8e2 Provides number-theoretic functions for factorization, prime numbers,
twin primes, primitive roots, modular logarithm and inverses, extended
GCD, Farey series and continuous fractions. Includes Legendre and Jacobi
symbols, some divisor functions, Euler's Phi function, etc.

WWW: https://cran.r-project.org/web/packages/numbers/
2018-08-31 14:11:44 +00:00
Yuri Victorovich
626f0d05eb New port: math/elpa: Eigenvalue soLver for Petaflop Applications 2018-08-29 22:03:23 +00:00
Rene Ladan
7526a10e45 Remove expired ports:
2018-08-20 net/openmq: Broken for more than 5 months
2018-08-20 net/coda6_server: Broken for more than 5 months
2018-08-20 net/ceph-devel: Broken for more than 5 months
2018-08-20 java/jgrapht: Broken for more than 5 months
2018-08-20 mail/mutt14: mutt 1.4.x has been out of support for 10+ years use mail/mutt
2018-08-20 www/pydio: Broken for more than 5 months
2018-08-20 security/fastd-devel: Broken for more than 5 months
2018-08-20 security/fastd: Broken for more than 5 months
2018-08-20 devel/bhyve-vm-goagent: Broken for more than 5 months
2018-08-20 devel/cherivis-devel: Depends on broken and expiring cheritrace-devel
2018-08-20 devel/cheritrace-devel: Broken for more than 5 months
2018-08-20 devel/javolution: Broken for more than 5 months
2018-08-20 devel/bisoncpp: Depends on broken and expiring libbobcat
2018-08-20 databases/php5-pdo_cassandra: Broken for more than 5 months
2018-08-20 games/crafty-open-large: Broken for more than 5 months
2018-08-20 games/crafty-open-enormous: Broken for more than 5 months
2018-08-20 games/crafty-open-medium: Broken for more than 5 months
2018-08-20 math/jakarta-commons-math: Broken for more than 5 months
2018-08-20 math/hfst: Broken for more than 5 months
2018-08-20 math/octave-forge-communications: Broken for more than 5 months
2018-08-20 lang/v8-devel: Broken for more than 5 months
2018-08-20 sysutils/rubygem-fluentd010: Broken for more than 5 months
2018-08-21 12:06:54 +00:00
Yuri Victorovich
dd08cd9df4 New port: math/blazeiterative: Set of iterative linear system solvers for use with the Blaze library 2018-08-19 18:21:47 +00:00
Yuri Victorovich
1473bbf3b6 New port: math/blaze: C++ math library for dense and sparse arithmetic 2018-08-19 18:00:36 +00:00
Mathieu Arnold
c65d3bebfd Regular sorting of categories Makefiles.
Sponsored by:	Absolight
2018-08-08 12:26:27 +00:00
Yuri Victorovich
9570014a75 New port: math/py-spot: Python binding for 'Spot', the library for omega automata manipulation 2018-08-04 23:33:34 +00:00
Yuri Victorovich
39cfcd2f48 New port: math/spot: Library for omega automata manipulation and model checking 2018-08-04 23:30:58 +00:00
Yuri Victorovich
d3a9df70ed New port: math/zegrapher: Software for plotting mathematical objects 2018-08-03 05:05:08 +00:00
Yuri Victorovich
7b989edc68 math/py-z3: Rename back to math/py-z3-solver to match it on PyPI website
z3 is a different project on PyPI.

Reported by:	koobs
2018-07-30 20:17:04 +00:00
Sunpoet Po-Chuan Hsieh
4c7aad3eeb Add p5-Statistics-CaseResampling 0.15
The purpose of this (XS) module is to calculate the median (or in principle also
other statistics) with confidence intervals on a sample. To do that, it uses a
technique called bootstrapping. In a nutshell, it resamples the sample a lot of
times and for each resample, it calculates the median. From the distribution of
medians, it then calculates the confidence limits.

In order to implement the confidence limit calculation, various other functions
had to be implemented efficiently (both algorithmically efficient and done in
C). These functions may be useful in their own right and are thus exposed to
Perl. Most notably, this exposes a median (and general selection) algorithm that
works in linear time as opposed to the trivial implementation that requires
O(n*log(n)).

WWW: https://metacpan.org/release/Statistics-CaseResampling
2018-07-28 13:15:35 +00:00