Commit graph

10336 commits

Author SHA1 Message Date
Pawel Pekala
ee268a4a01 Remove deprecated @dirrm
PR:		206071
Submitted by:	myself
Approved by:	portmgr (blanket)
2016-01-09 14:59:54 +00:00
Olivier Duchateau
a3911c113c - Update to 1.10.4
- Remove DOCVERSION (use SF host to fetch PDF documentation, more up-to-date
than SciPy.org)

Changes: https://github.com/numpy/numpy/blob/master/doc/release/1.10.4-notes.rst
2016-01-08 08:33:03 +00:00
Maho Nakata
90f7db573c Update to 4.0.0
PR:		201737 (partially)
Submitted by:	you.akira.noda@gmail.com
2016-01-08 08:18:36 +00:00
Pawel Pekala
9edcde37b9 - Remove home grown plist target, it used deprecated @dirrm
and make makeplist is doing the same job just fine
- Remove DOCS option, only DOCSDIR directory was installed,
  bump PORTREVISION - plist changed for default configuration
- Use options helper for EXAMPLES option
2016-01-06 19:48:08 +00:00
Dmitry Sivachenko
f1d26b30e0 Release to ports@ 2016-01-06 16:59:24 +00:00
Kubilay Kocak
0667006249 math/{py-}cryptominisat: Update to 4.5.3
Common:

- Update PORTVERSION and distinfo checksum (4.5.3) [1]
- Switch to GITHUB for DISTFILES, remove USES=tar accordingly [1]

py-cryptominisat:

- Convert into fully fledged port
- Add distinfo and proper (unique) pkg-descr
- Remove MASTER port overrides accordingly
- Match COMMENT to upstream setup.py:description
- De-scope USES=compiler to compiler only
- Remove upstreamed patches
- Patch to properly use distutils and autoplist instead
  of an uncessary cmake build (Also add post-patch for this)
- Strip shared library

cryptominisat:

- Remove slave port overrides
- Add BUILD_DEPENDS on vim-lite for xxd(8) tool [1]
- Remove upstreamed patches [1]
- Add patches for missing includes breaking builds on 9.3 [1]
- Update pkg-plist [1]

[1] https://github.com/msoos/cryptominisat/issues/304

PR:		204850 [1]
Submitted by:	maintainer [1]
Approved by:	maintainer [*]
2016-01-06 14:07:05 +00:00
Ruslan Makhmatkhanov
9c73f6b26d math/py-networkx: let it build with python3
Drop the python version limit, by asking user to uncheck some options,
that will not work with python3 for now.

PR:		204594
Submitted by:	John W. O'Brien <john@saltant.com>
Approved by:	dikshie@sfc.wide.ad.jp (maintainer)
2016-01-05 08:42:05 +00:00
Raphael Kubo da Costa
cfc4677d8c Switch to a working MASTER_SITE.
Version 3.1 does not seem to be released in PyPI.

MFH:		2016Q1
2016-01-03 23:23:09 +00:00
Kurt Jaeger
2487f5dd9f math/jags: 3.4.0 -> 4.0.0
- New WWW
- Changes:
  https://martynplummer.wordpress.com/2015/08/02/whats-new-in-jags-4-0-0-part-14-reproducibility-and-testing/
  https://martynplummer.wordpress.com/2015/08/09/whats-new-in-jags-4-0-0-part-24-dealing-with-undefined-nodes/
  https://martynplummer.wordpress.com/2015/08/16/whats-new-in-jags-4-0-0-part-34-r-style-features/#more-353

PR:		204525
Submitted by:	Rainer Hurling <rhurlin@gwdg.de>
Approved by:	bf
2016-01-03 18:13:44 +00:00
Muhammad Moinur Rahman
07435ddabf math/p5-Math-Derivative: Update version 0.03=>0.04 2016-01-02 00:16:40 +00:00
Olivier Duchateau
7063b1135e - Update to 1.10.2
- Reintroduce DOCVERSION variable, PDF documentation is not synchronized with
release
- Add missing dependency [1] for NETLIB option

PR:		203638 [1]
Submitted by:	John Hein [1]
2016-01-01 17:34:40 +00:00
Raphael Kubo da Costa
6009256d19 Switch to a working MASTER_SITE and unmark broken.
Also remove an old entry from distinfo that has not been used since r238832.
2016-01-01 16:51:12 +00:00
Raphael Kubo da Costa
9e595f5d16 Update to 1.0.0 and unbreak fetching.
- Switch to the port's new GitHub location.
- Add more runtime dependencies for additional functionality.
2016-01-01 16:21:44 +00:00
Raphael Kubo da Costa
76db174327 Fix MASTER_SITES for pure-* ports in math/.
cdn.bitbucket.org returns HTTP 403, switch to bitbucket.org to unbreak
fetching.
2016-01-01 15:54:38 +00:00
Raphael Kubo da Costa
a5d3a7ab28 Switch to a working MASTER_SITE, regenerate distinfo and unmark BROKEN.
Switch to fetching the source tarball from the website indicated in WWW. It
is slightly different from the previous tarball: some build system files
were generated by a more recent version of autotools, the documentation
contains a typo fix and its ChangeLog mentions this fix.
2016-01-01 15:49:44 +00:00
Dmitry Marakasov
a5b75f4afd - Pet portlint
- Switch to options helpers
2015-12-31 10:58:16 +00:00
Martin Wilke
fd13f084af - Correct PORTNAME
Reported by:    koobs
2015-12-31 03:24:11 +00:00
Martin Wilke
3461c16a26 - Remove duplicate www
- Provide a better description
2015-12-31 03:19:03 +00:00
Martin Wilke
ae8c724ac2 Tools for manipulating VTK (Visualization Toolkit) files in Python.
WWW: https://github.com/pearu/pyvtk/
WWW: https://pypi.python.org/pypi/PyVTK/

PR:		205644
Submitted by:	Yuri Victorovich <yuri@rawbw.com>
2015-12-31 03:12:50 +00:00
Rene Ladan
3b93c5c02a Remove expired ports:
2015-12-30 www/ocsigen: Broken for more than 6 months
2015-12-30 devel/monodevelop-database: Broken for more than 6 months
2015-12-30 lang/cduce: Broken for more than 6 months
2015-12-30 science/hdf-java: Broken for more than 6 months
2015-12-30 math/p5-Math-Geometry-Planar-GPC-Polygon: Broken for more than 6 months
2015-12-30 www/eliom: Depends on broken and expiring www/ocsigen
2015-12-30 audio/py-fastaudio: Broken for more than 6 months
2015-12-30 devel/jgoodies-common: Broken for more than 6 months
2015-12-30 graphics/pinta: Broken for more than 6 months
2015-12-30 games/kanatest: Broken for more than 6 months
2015-12-30 editors/bless: Broken for more than 6 months
2015-12-30 security/burpsuite: Broken for more than 6 months
2015-12-30 23:20:40 +00:00
Antoine Brodin
818888376b Fix fech, GH_PROJECT for this port is case sensitive 2015-12-30 09:53:30 +00:00
Sunpoet Po-Chuan Hsieh
d7371a5f05 - Update to 0.260802
- Add LICENSE
- Add NO_ARCH
- Remove outdated post-patch:
- Sort PLIST

Changes:	http://search.cpan.org/dist/Math-BigRat/CHANGES
2015-12-29 16:10:20 +00:00
Mathieu Arnold
7823fa4b7e Cleanup GH_* and variables order.
Sponsored by:	Absolight
2015-12-29 14:30:46 +00:00
Raphael Kubo da Costa
1a698db6ec Drop PLOT option.
gnuplot completely removed support for the gnugraph and unixplot terminal
drivers in 2011. From the one of the ChangeLog files:

> 2011-05-31  Ethan A Merritt  <merritt@u.washington.edu>
> [...]
> Remove obsolete terminal drivers gnugraph and unixplot. The underlying
> gnu plotutils library is itself more than 10 years out of date (last
> release July 2000) and the terminal drivers haven't been upgraded for
> longer than that. In any event, current gnuplot has better native
> terminal drivers for the devices supported by unixplot/gnugraph.

In practice, this means the PLOT option is a no-op and the dependency on
graphics/plotutils is unnecessary. Indeed, if one looks at the port's build
logs in the cluster the following can be seen:

configure: WARNING: unrecognized options: --without-lisp-files, --with-plot,
--disable-thin-splines, --with-wx-config

PR:		205488
Approved by:	glewis (maintainer)
2015-12-26 23:47:57 +00:00
Martin Wilke
ff66763537 - Fix build
PR:		205491
2015-12-26 11:40:41 +00:00
Koop Mast
6bf0ceb19e Update gnumeric to 1.12.25. 2015-12-26 10:36:45 +00:00
Kubilay Kocak
d8b78e009c math/py-pycosat: Update to 0.6.1
- Update PORTVERSION and distinfo checksum (0.6.1) [1]
- Use PYTHON_SITELIBDIR in post-install STRIP_CMD
- Update test target to new convention

Changes:

  https://github.com/ContinuumIO/pycosat/blob/0.6.1/CHANGELOG

PR:		205564 [1]
Submitted by:	Yuri <yuri rawbw com> [1]
2015-12-26 07:23:01 +00:00
Vanilla I. Shu
5e279ec3d3 Add py-pyhull 1.5.6, computation of convex hull, Delaunay triangulation
and Voronoi diagram.

PR:		205593
Submitted by:	Yuri Victorovich <yuri@rawbw.com>
2015-12-25 09:20:38 +00:00
Sunpoet Po-Chuan Hsieh
53ac6eda6f - Update MAINTAINER: use @FreeBSD.org 2015-12-25 07:04:07 +00:00
Wen Heping
12f9e1d4a5 - Update to 2.3.6 [1]
- Update my email

PR:		205561 [1]
Submitted by:	yuri@rawbw.com [1]
2015-12-25 06:05:17 +00:00
Martin Wilke
58a1eb3975 - Update from 2.2.2 (r2652) to 2.2.3 (r2737)
- Use other distfile naming scheme again
- Correct usage of wx-config for SAGA GIS module io_virtual
- Adjust naming scheme of patches via 'make makepatch'
- Update pkg-plist

PR:		    205491
Submitted by:   maintainer
2015-12-24 14:04:16 +00:00
Stephen Montgomery-Smith
550f30b303 - Update to 0.3.0. 2015-12-23 23:16:49 +00:00
Thierry Thomas
97f14f4839 Upgrade RKWard to 0.6.4.
Release notes at
https://rkward.kde.org/News#RKWard_0.6.4_-_Usability_improvements.2C_fixes.2C_and_preparation_for_porting_to_KDE_frameworks_version_5

Notified by:	Michael L. Wilson
2015-12-23 21:28:01 +00:00
Danilo Egea Gondolfo
11e20a7d9b - Update to 6.400.3 2015-12-22 23:26:15 +00:00
Martin Wilke
e679a585e4 - Update to 15.09-1
PR:		205214
Submitted by:	Ports Fury
Approved by:	mat (mentor)
Differential Revision:	D4612
2015-12-22 14:47:19 +00:00
Raphael Kubo da Costa
5ceffa7537 Drop dependency on graphics/plotutils.
According to the port's NEWS and ChangeLog, charts are currently produced
with Cairo and Pango, so the dependency on libplot is useless nowadays.
2015-12-21 14:19:10 +00:00
Antoine Brodin
c2c18a4975 Mark BROKEN: fails to build, does not respect DISABLE_MAKE_JOBS
gmake[2]: Entering directory '/wrkdirs/usr/ports/math/gotoblas/work/GotoBLAS2/test'
f77 -O2 -Wl,-rpath=/usr/local/lib/gcc48 -m128bit-long-double -Wall  -m64 -fPIC  -c sblat1.f  -o sblat1.o
gmake[2]: f77: Command not found
f77 -O2 -Wl,-rpath=/usr/local/lib/gcc48 -m128bit-long-double -Wall  -m64 -fPIC  -c dblat1.f  -o dblat1.o
gmake[2]: f77: Command not found
f77 -O2 -Wl,-rpath=/usr/local/lib/gcc48 -m128bit-long-double -Wall  -m64 -fPIC  -c cblat1.f  -o cblat1.o
../Makefile.system:721: recipe for target 'dblat1.o' failed
gmake[2]: *** [dblat1.o] Error 127
gmake[2]: *** Waiting for unfinished jobs....
../Makefile.system:721: recipe for target 'sblat1.o' failed
gmake[2]: *** [sblat1.o] Error 127
gmake[2]: f77: Command not found
../Makefile.system:721: recipe for target 'cblat1.o' failed

Reported by:	pkg-fallout
2015-12-19 15:22:27 +00:00
Danilo Egea Gondolfo
3dd5e62d02 - Update to 6.400.2 2015-12-18 23:14:41 +00:00
Wen Heping
c6e15e3b3f - Update to 5.0.9
- Add LICENSE
- Update DEPENDS
2015-12-18 06:38:08 +00:00
Wen Heping
a7ae515470 MatchIt selects matched samples of the the original treated and
control groups with similar covariate distributions - can be used
to match exactly on covariates, to match on propensity scores, or
perform a variety of other matching procedures.

WWW: http://gking.harvard.edu/matchit
2015-12-18 02:17:57 +00:00
Wen Heping
1b2f3f594a Generalized estimating equations solver for parameters in
mean, scale, and correlation structures, through mean link,
scale link, and correlation link. Can also handle clustered
categorical responses.

WWW: https://cran.r-project.org/web/packages/geepack/
2015-12-18 02:03:44 +00:00
Wen Heping
af3cb164eb A fast, consistent tool for working with data frame like
objects, both in memory and out of memory.

WWW: https://github.com/hadley/dplyr
2015-12-18 00:28:24 +00:00
Mathieu Arnold
7c47779cb9 Fix usage of ${PERL5}.
${PERL5} points to a specific version of perl, say, perl5.22.1, it is
fine to use it in a ports Makefile to do Perly things, but ports using
it must use ${PERL}, that points to /usr/local/bin/perl so that if the
minor version is updated, the shebang keep working.

While there, make some ports use shebangfix, regen a few patches, and
bump PORTREVISION where a shebang went from PERL5 to PERL.

PR:		205367
With hat:	portmgr
Sponsored by:	Absolight
2015-12-17 17:19:48 +00:00
Frederic Culot
bce1c7e8e8 - Reassign sperber@'s ports after his commit bit was taken in for safekeeping 2015-12-16 13:45:17 +00:00
Wen Heping
4bd1278c4e assertthat is an extension to stopifnot() that makes it easy to
declare the pre and post conditions that you code should satisfy,
while also producing friendly error messages so that your users
know what they've done wrong.

WWW: https://cran.r-project.org/web/packages/assertthat/
2015-12-16 07:58:08 +00:00
Wen Heping
1c074a38f0 A disciplined approach to non-standard evaluation.
WWW: https://cran.r-project.org/web/packages/lazyeval/
2015-12-16 07:44:49 +00:00
Wen Heping
cadfd2d36d A tool that "multiply imputes" missing data in a single cross-section
(such as a survey), from a time series (like variables collected for
each year in a country), or from a time-series-cross-sectional data set
(such as collected by years for each of several countries).

WWW: http://gking.harvard.edu/amelia
2015-12-16 07:12:50 +00:00
Thierry Thomas
c385b57fcd Re-add the dependency to math/R-cran-car, since it has been fixed
(PR ports/204587).
2015-12-15 20:41:37 +00:00
Stephen Montgomery-Smith
d248ce9d80 - Update to 2.2.4. 2015-12-15 14:10:52 +00:00
Raphael Kubo da Costa
b15d595457 Update PyQt4 to 4.11.4, SIP to 4.17 and QScintilla2 to 2.9.1.
Bring in some long overdue updates, some of which are required for us to
later land the PyQt5 ports.

One big change with this update is that the PyQt4 ports now install their
.sip files into share/py-sip/PyQt4 instead of share/py-sip. This way we do
not end up with directories like share/py-sip/QtCore, which are especially
confusing once PyQt5 lands and starts installing files with the same names.

Other noteworthy items:
- PORTREVISION has been bumped on ports depending on devel/qscintilla2
  because libqscintilla2.so's SOVERSION has changed.
- graphics/seexpr has been converted to USE_PYQT, as the file it used to
  define a build-time dependency on x11-toolkits/py-qt4-gui has moved.

Once again, big thanks to Tobias Berner <tcberner@gmail.com> and Guido Falsi
(madpilot@) for their initial work on these ports as part of the effort to
land PyQt5 into the tree (see D2910 in Phabricator for an earlier version of
the PyQt5 patch set).

PR:		205143
2015-12-13 12:45:25 +00:00