Commit graph

899 commits

Author SHA1 Message Date
Maho Nakata
b425b07ea7 Add an math/openblas.
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
OpenBLAS is an open source project supported by
Lab of Parallel Software and Computational Science, ISCAS.

NOTE: If you want to specify your CPU microarchitecture manually,
please use TARGET_CPU_ARCH knob, e.g., "make TARGET_CPU_ARCH=NEHALEM".
This value is set TARGET build flag.

WWW: https://github.com/xianyi/OpenBLAS

PR:		165684
Submitted by:	Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp>
2012-08-26 10:42:45 +00:00
Steven Kreuzer
d3ba90b638 An R interface to the Lawson-Hanson implementation of an algorithm for
non-negative least squares (NNLS). Also allows the combination of non-negative
and non-positive constraints.

WWW:	http://cran.r-project.org/web/packages/nnls/
2012-08-22 14:03:17 +00:00
Ruslan Makhmatkhanov
6e90b12431 Add py-pandas , flexible, high-performance data analysis in Python.
PR:		169168
Submitted by:	John W. O'Brien <john at saltant dot com>
2012-08-16 14:57:27 +00:00
Stephen Montgomery-Smith
568d36cfaa - New port, math/octave-forge-lssa.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is lssa.

 A package implementing tools to compute spectral decompositions of
 irregularly-spaced time series.  Currently includes functions based off the
 Lomb-Scargle periodogram and Adolf Mathias' implementation for R and C (see
 http://www.jstatsoft.org/v11/i02).

WWW: http://octave.sourceforge.net/
2012-08-14 20:39:30 +00:00
Dmitry Sivachenko
c04020ecee OpenGL Mathematics (GLM) is a header only C++ mathematics library for
graphics software based on the OpenGL Shading Language (GLSL) specification.

GLM provides classes and functions designed and implemented with the same
naming conventions and functionalities than GLSL so that when a programmer
knows GLSL, he knows GLM as well which makes it really easy to use.
2012-08-03 15:13:10 +00:00
Wen Heping
9ea4e9010a dlmodeler is a set of user-friendly functions to simplify the state-space
modelling, fitting, analysis and forecasting of Generalized Dynamic Linear
Models (DLMs). It includes functions to name and extract individual components
of a DLM, build classical seasonal time-series models (monthly, quarterly,
yearly, etc. with calendar adjustments) and provides a unified interface
compatible with other state-space packages including: dlm, FKF and KFAS.

WWW: http://cran.r-project.org/web/packages/dlmodeler/

PR:		170069
Submitted by:	Cyrille Szymanski <cnszym@gmail.com>
2012-07-24 08:30:46 +00:00
Stephen Montgomery-Smith
b5c1778def - New port math/octave-forge-ncarray.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is ncarray.

Access a single or a collection of NetCDF files as a multi-dimensional array.
2012-07-20 23:29:42 +00:00
Sunpoet Po-Chuan Hsieh
560dc2464e - Add p5-Number-Uncertainty 0.1
Number::Uncertainty provides an object-orientated uncertainty object. It stores
information about a value and its error bounds.

WWW: http://search.cpan.org/dist/Number-Uncertainty/
2012-07-10 06:33:01 +00:00
Brendan Fabeny
5930109e8e add math/metis4 to math/Makefile; update math/metis to 5.0.2; add appropriate
CONFLICTS, LATEST_LINK, and PORTSCOUT; adjust dependent ports; explicitly
note the restrictive license of the metis ports (while here, append the MPI port to
*DEPENDS in math/parmetis, rather than using an assignment)

PR:		169578
2012-07-09 11:11:44 +00:00
Alberto Villa
679f575761 - Connect math/eigen3 to the build. 2012-06-27 15:49:20 +00:00
Brendan Fabeny
feb3539c12 Add arpack-ng 3.1.1, revised Argand library for solving large-scale
eigenvalue problems.
2012-06-27 05:58:22 +00:00
Sunpoet Po-Chuan Hsieh
0ce789f072 - Add p5-Math-GMPz 0.35
Math::GMPz is a bignum module utilising the GNU MP (GMP) library. Basically this
module simply wraps all of the mpz integer functions provided by that library.
See the Math::GMPz test suite for some examples of usage.

WWW: http://search.cpan.org/dist/Math-GMPz/
2012-06-22 21:30:32 +00:00
Sunpoet Po-Chuan Hsieh
b2d1c9878a - Add p5-Math-GMPq 0.35
Math::GMPq is a bigrational module utilising the GNU MP (GMP) library. Basically
this module simply wraps all of the mpq rational functions provided by that
library. See the Math::GMPq test suite for some examples of usage.

IMPORTANT:
If your perl was built with '-Duse64bitint' you need to assign all integers
larger than 52-bit in a 'use integer;' block. Failure to do so can result in the
creation of the variable as an NV (rather than an IV) - with a resultant loss of
precision.

WWW: http://search.cpan.org/dist/Math-GMPq/
2012-06-22 21:29:37 +00:00
Sunpoet Po-Chuan Hsieh
a8e379637c - Add p5-Math-GMPf 0.35
Math::GMPf is a bigfloat module utilising the GNU MP (GMP) library. Basically
this module simply wraps all of the mpf floating point functions provided by
that library. See the Math::GMPf test suite for some examples of usage.

WWW: http://search.cpan.org/dist/Math-GMPf/
2012-06-22 21:28:16 +00:00
Stephen Montgomery-Smith
3555894f69 - New port math/octave-forge-java.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is java, and provides a Java interface with OO-like Java objects
manipulation.
2012-06-20 02:38:16 +00:00
Gabor Pali
46e9ab0ca5 - Update The Glorious Glasgow Haskell Compiler to version 7.4.1
Please note that port revision for all the Haskell ports without version changes
are also bumped.  Other per-port updates are coming soon (in separate commits)!
In addition to that, separate -docs ports are no longer needed so they are
now removed.

Thanks ashish@ for the assistance.

Obtained from:	FreeBSD Haskell
2012-06-03 20:52:29 +00:00
Martin Wilke
fba7922ca4 Commons Math is a library of lightweight, self-contained mathematics and
statistics components addressing the most common problems not available in the
Java programming language or Commons Lang.

WWW: http://jakarta.apache.org/commons/math/

PR:		ports/166398
Submitted by:	Muhammad Moinur Rahmanh <5u623l20@gmail.com>
2012-05-25 13:51:37 +00:00
Max Brazhnikov
f564508406 KDE/FreeBSD team presents long awaited KDE SC 4.8.3!
kdeaccessibility4 and kdeutils4 are now meta ports. deskutils/kdepim4 updated
to match KDE SC version, old kdepim preserved in deskutils/kdepim44.

Follow UPDATING instruction!

New ports:
- accessibility/kaccessible
- accessibility/kmag
- accessibility/kmousetool
- accessibility/kmouth
- archivers/ark
- comms/kremotecontrol
- deskutils/kcharselect
- deskutils/kdepim44
- deskutils/kdepim44-runtime
- deskutils/superkaramba
- devel/kdebindings4-perl-perlkde
- devel/kdebindings4-perl-perlqt
- math/analitza
- math/kcalc
- misc/kde4-l10n-fa
- security/kgpg-kde4
- security/kwallet
- sysutils/kdf
- sysutils/kfloppy
- sysutils/sweeper
- vietnamese/kde4-l10n
- x11-clocks/ktimer
- x11/kactivities
- x11/libkonq

Removed ports:
- devel/kdebindings4-kross-interpreters
- devel/kdebindings4-python
- devel/kdebindings4-ruby
- devel/kdebindings4-smoke
2012-05-25 02:15:20 +00:00
Florian Smeets
902a0675be readd php 5.3.13 and all its modules as php53* 2012-05-16 09:46:51 +00:00
Baptiste Daroussin
f44915884b 2012-05-10 archivers/php4-bz2: php4 is EOLed
2012-05-10 archivers/php4-zlib: php4 is EOLed
2012-05-10 converters/php4-iconv: php4 is EOLed
2012-05-10 converters/php4-mbstring: php4 is EOLed
2012-05-10 converters/php4-recode: php4 is EOLed
2012-05-10 databases/php4-dba: php4 is EOLed
2012-05-10 databases/php4-dbase: php4 is EOLed
2012-05-10 databases/php4-dbx: php4 is EOLed
2012-05-10 databases/php4-filepro: php4 is EOLed
2012-05-10 databases/php4-interbase: php4 is EOLed
2012-05-10 databases/php4-mssql: php4 is EOLed
2012-05-10 databases/php4-mysql: php4 is EOLed
2012-05-10 databases/php4-odbc: php4 is EOLed
2012-05-10 databases/php4-oracle: php4 is EOLed
2012-05-10 databases/php4-pgsql: php4 is EOLed
databases/php4-rrdtool: php4 is EOLed
2012-05-10 databases/php4-sybase_ct: php4 is EOLed
2012-05-10 devel/php4-dio: php4 is EOLed
2012-05-10 devel/php4-gettext: php4 is EOLed
2012-05-10 devel/php4-mcve: php4 is EOLed
2012-05-10 devel/php4-ncurses: php4 is EOLed
2012-05-10 devel/php4-pcntl: php4 is EOLed
2012-05-10 devel/php4-pcre: php4 is EOLed
2012-05-10 devel/php4-readline: php4 is EOLed
2012-05-10 devel/php4-shmop: php4 is EOLed
2012-05-10 devel/php4-sysvmsg: php4 is EOLed
2012-05-10 devel/php4-sysvsem: php4 is EOLed
2012-05-10 devel/php4-sysvshm: php4 is EOLed
2012-05-10 devel/php4-tokenizer: php4 is EOLed
2012-05-10 finance/php4-pfpro: php4 is EOLed
2012-05-10 ftp/php4-curl: php4 is EOLed
2012-05-10 ftp/php4-ftp: php4 is EOLed
2012-05-10 graphics/php4-chartdirector: php4 is EOLed
2012-05-10 graphics/php4-exif: php4 is EOLed
2012-05-10 graphics/php4-gd: php4 is EOLed
lang/php4: php4 is EOLed
2012-05-10 lang/php4-extensions: php4 is EOLed
2012-05-10 lang/php4-overload: php4 is EOLed
2012-05-10 mail/php4-imap: php4 is EOLed
2012-05-10 math/php4-bcmath: php4 is EOLed
2012-05-10 math/php4-gmp: php4 is EOLed
2012-05-10 misc/php4-calendar: php4 is EOLed
2012-05-10 misc/php4-mcal: php4 is EOLed
2012-05-10 net/php4-ldap: php4 is EOLed
2012-05-10 net/php4-sockets: php4 is EOLed
2012-05-10 net/php4-xmlrpc: php4 is EOLed
2012-05-10 net/php4-yp: php4 is EOLed
2012-05-10 net-mgmt/php4-snmp: php4 is EOLed
2012-05-10 security/php4-crack: php4 is EOLed
2012-05-10 security/php4-mcrypt: php4 is EOLed
2012-05-10 security/php4-mhash: php4 is EOLed
2012-05-10 security/php4-openssl: php4 is EOLed
2012-05-10 sysutils/php4-posix: php4 is EOLed
2012-05-10 textproc/php4-ctype: php4 is EOLed
2012-05-10 textproc/php4-domxml: php4 is EOLed
2012-05-10 textproc/php4-pspell: php4 is EOLed
2012-05-10 textproc/php4-wddx: php4 is EOLed
2012-05-10 textproc/php4-xml: php4 is EOLed
2012-05-10 textproc/php4-xslt: php4 is EOLed
2012-05-10 www/php4-session: php4 is EOLed
2012-05-10 archivers/pecl-zip: php4 is EOLed
2012-05-10 databases/pecl-sqlite: php4 is EOLed
2012-05-11 devel/pear-XML_XPath: php4 is EOLed
2012-05-11 devel/pecl-json: php4 is EOLed
2012-05-10 www/pecl-tidy: php4 is EOLed
2012-05-10 www/php-dyn: php4 is EOLed
2012-05-11 security/pecl-hash: php4 is EOLed
2012-05-11 net/phpldapadmin098: php4 is EOLed
graphics/jpgraph: php4 is EOLed
2012-05-11 19:36:53 +00:00
TAKATSU Tomonari
601d6e7c57 - Add a new port: math/R-cran-labeling
Implements a number of axis labeling schemes, including those
  compared in An Extension of Wilkinson's Algorithm for Positioning
  Tick Labels on Axes by Talbot, Lin, and Hanrahan, InfoVis 2010.

  WWW:	http://cran.r-project.org/web/packages/labeling/
2012-05-09 22:24:28 +00:00
Wen Heping
75b19d789e UFC (Unified Form-assembly Code) is a unified framework for finite element
assembly.

WWW:    https://launchpad.net/ufc

PR:		167274
Submitted by:	Jason Bacon <jwbacon@tds.net>
2012-05-07 06:55:22 +00:00
Stephen Montgomery-Smith
1fdbec0b34 - Remove.
Reference:	http://octave.1599824.n4.nabble.com/new-package-releases-time-2-0-0-and-financial-0-4-0-td4569108.html
2012-04-19 00:12:42 +00:00
Ruslan Makhmatkhanov
1f58d6cd89 - fix entries sorting
PR:		166960
Submitted by:	Conrad J. Sabatier <conrads at cox dot net>
2012-04-15 09:57:10 +00:00
Jason Helfman
b98600cc5b Add new port: math/py-viper
Viper is a minimalistic scientific plotter and run-time visualization module.
Viper has support for visualizing meshes and solutions in DOLFIN.

WWW:	https://launchpad.net/fenics-viper

PR:	ports/166913
Submitted by:	jwbacon@tds.net
2012-04-14 19:27:42 +00:00
Jason Helfman
90421c0a01 Add new port: math/py-ufl
The Unified Form Language (UFL) is a domain specific language for declaration
of finite element discretizations of variational forms.

WWW:	https://launchpad.net/ufl

PR:	ports/166911
Submitted by:	jwbacon@tds.net
2012-04-14 19:25:33 +00:00
Jason Helfman
2afedb2f1e Add new port: math/py-fiat
The FInite element Automatic Tabulator FIAT supports generation of arbitrary
order instances of the Lagrange elements on lines, triangles, and tetrahedra.

WWW:	https://launchpad.net/fiat

PR:	ports/166910
Submitted by:	jwbacon@tds.net
2012-04-14 19:23:25 +00:00
Ruslan Makhmatkhanov
674e43a6c7 FFC works as a compiler for multilinear forms by generating code (C++) for
the evaluation of a multilinear form given in mathematical notation.

WWW:	https://launchpad.net/ffc

PR:		166700
Submitted by:	Jason Bacon <jwbacon@tds.net>
2012-04-12 19:33:50 +00:00
Steve Wills
03ebb16928 Perl module which lets you calculate with strings (specifically passwords, but
not limited to) as if they were big integers.

WWW:	http://search.cpan.org/dist/Math-String/

Feature safe:	yes
2012-04-08 18:28:25 +00:00
Carlo Strub
0ff6db1a7e Scriptable bar graph generator with stacked and clustered bars support, using
gnuplot to produce fig output and then mangle it to fill in the bars. Any number
of clustered datasets are supported, as well as automatic averaging and other
features.

WWW: http://www.burningcutlery.com/derek/bargraph/

PR:		ports/166410
Submitted by:	Dereckson <dereckson@gmail.com>
Approved by:	wen@ (co-mentor)
Feature safe:	yes
2012-04-04 21:37:37 +00:00
Philip M. Gollucci
3c4d5b6416 - update to 0.6.6
- add and update URLs of MASTER_SITES
- update author's email address
- use @dirrmtry
- change port category from math to science.

- Completes repo copy from math/ruby-netcdf -> science/ruby-netcdf

PR:             ports/165314
Submitted by:   Shin-ya Murakami <murashin@gfd-dennou.org>
2012-03-08 04:34:40 +00:00
Pietro Cerutti
2bbecf479f - New port: math/carve
Carve is a C++ library designed to perform boolean operations between two
  arbitrary polygonal meshes. The standard union and intersection operations
  are supported, as are symmetric and asymmetric difference. It is also
  possible to implement custom operations using Carve, allowing results to be
  formed from any combination of inputs.
  Carve supports a variety of inputs, including both closed and open surfaces,
  faces with arbitrary edge counts and datasets with multiple disjoint,
  embedded or touching surfaces. Carve can also interpolate arbitrary values
  across faces, meaning that CSG operations need not discard colour, texture
  coordinates or other data.

  WWW: http://code.google.com/p/carve/
2012-02-20 10:56:06 +00:00
Gabor Pali
1a2291a4cf - Connect all the previously added hs- ports to the build
Obtained from:	FreeBSD Haskell
2012-02-13 03:58:47 +00:00
TAKATSU Tomonari
9e8084ffbd - Add a new port: math/R-cran-KFAS
Package KFAS provides funchtions for Kalman filtering, state,
  disturbance and simulation smoothing, forecasting and simulation
  of state space models. All functions can use exact diffuse
  initialisation when distributions of some or all elements of initial
  state vector are unknown. Filtering, state smoothing and simulation
  functions use sequential processing algorithm, which is faster than
  standard approach, and it also allows singularity of prediction
  error variance matrix. KFAS also contains function for computing
  the likelihood of exponential family state space models and function
  for state smoothing of exponential family state space models.

  WWW:	http://cran.r-project.org/web/packages/KFAS/
2012-02-11 14:59:28 +00:00
Stephen Montgomery-Smith
0c3d03543d -New port octave-forge-queueing.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

  The queueing toolbox provides functions for queueing networks and Markov
  chains analysis. This package can be used to compute steady-state performance
  measures for open, closed and mixed networks with single or multiple job
  classes. Mean Valud Analysis (MVA), convolution and various bounding
  techniques are implemented. Various transient and steady-state performance
  measures for Markov chains can als be computed (including state occupancy
  probabilities, mean time to absorption, time-averaged sojourn times), both
  for continuous-time and discrete-time chains.
2012-02-06 19:42:56 +00:00
Steve Wills
2cc2ef999d A Perl module that provides a mechanism to render (La)TeX formulae to ASCII
art.

WWW:	http://search.cpan.org/dist/Text-AsciiTeX/
2012-02-05 02:08:37 +00:00
TAKATSU Tomonari
23aeb1d2f9 - Add a new port: math/R-cran-bdsmatrix
This is a special case of sparse matrices, used by coxme

  WWW:	http://cran.r-project.org/web/packages/bdsmatrix/
2012-02-04 10:39:18 +00:00
TAKATSU Tomonari
3be044275a - Add a new port: math/R-cran-Formula
Infrastructure for extended formulas with multiple parts on the
  right-hand side and/or multiple responses on the left-hand side.

  WWW:	http://cran.r-project.org/web/packages/Formula/
2012-02-04 10:38:00 +00:00
Wen Heping
cef3e449d2 This library provides implementations of special mathematical functions
and Chebyshev polynomials. These functions are often useful in statistical
and numerical computing.

WWW: https://github.com/bos/math-functions
2012-02-02 12:56:00 +00:00
TAKATSU Tomonari
2adb20ceca - Add a new port: math/R-cran-memisc
One of the aims of this package is to make life easier for useRs
  who deal with survey data sets. It provides an infrastructure for
  the management of survey data including value labels, definable
  missing values, recoding of variables, production of code books,
  and import of (subsets of) SPSS and Stata files. Further, it provides
  functionality to produce tables and data frames of arbitrary
  descriptive statistics and (almost) publication-ready tables of
  regression model estimates. Also some convenience tools for graphics,
  programming, and simulation are provided.

  WWW:	http://www.martin-elff.net/software/memisc/
2012-01-31 13:10:17 +00:00
TAKATSU Tomonari
3e5032ae75 - Re-add math/R-cran-igraph
- Update to 0.5.5-4
- Add LICENSE section
- Take maintainership [1]

PR:		ports/164110
Submitted by:	tota (myself)
Approved by:	previous maintainer (timeout > 2 weeks) [1]
2012-01-28 02:48:28 +00:00
Pav Lucistnik
61d3e67655 - Add a couple of pure extensions:
devel/pure-readline:   A readline interface for the Pure language
  devel/pure-stldict:    Pure interface to C++ STL map/unordered_map
  devel/pure-stlvec:     Pure interface to C++ STL vector
  math/pure-mpfr:        Multiprecision floats for Pure
  x11-toolkits/pure-tk:  A basic interface between Pure and Tcl/Tk

PR:		ports/161799
Submitted by:	Zhihao Yuan <lichray@gmail.com>
2012-01-26 20:18:32 +00:00
Stephen Montgomery-Smith
5a19c8e588 - New port sage-4.8.
Sage is a free open-source mathematics software system licensed under the GPL.
It combines the power of many existing open-source packages into a common
Python-based interface.

Mission: Creating a viable free open source alternative to Magma, Maple,
Mathematica and Matlab.
2012-01-24 23:55:01 +00:00
Maho Nakata
79b923300e Adding xlapack:
Extra precision version of LAPACK which uses XBLAS. It uses
XBLAS instead BLAS to use LAPACK.

http://www.netlib.org/lapack/

Submitted by:	bf
2012-01-23 01:59:16 +00:00
Brendan Fabeny
11fb6f6ca0 Add crlibm , correctly-rounded mathematics library. 2012-01-11 06:47:02 +00:00
Brendan Fabeny
b7b2c4fadf Add cblas 1.0, reference implementation of the C interface to the legacy
Fortran BLAS.
2012-01-09 19:12:17 +00:00
Brendan Fabeny
6ff43c6512 Add xblas 1.0.248, extra Precise Basic Linear Algebra Subroutines
(BLAS).
2012-01-06 10:50:11 +00:00
Brendan Fabeny
31433bfc45 Add spblas , NIST Sparse Basic Linear Algebra Subprograms (BLAS). 2012-01-05 21:15:43 +00:00
Brendan Fabeny
7ec767eacf Add libflame , FLAME dense linear algebra library. 2012-01-05 02:35:10 +00:00
Brendan Fabeny
eb6cb039fc Add kktdirect 0.5, a direct solver package for saddle-point (KKT)
matrices.
2012-01-02 09:58:01 +00:00
Brendan Fabeny
8f2e1a8f01 Add slatec 4.1, SLATEC Common Mathematical Library.
PR:		151970
Submitted by:	A. Shterenlikht (original version)
2011-12-28 06:01:49 +00:00
Stephen Montgomery-Smith
805910ebe3 - New port math/octave-forge-dicom.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is dicom.  Digital communications in medicine (DICOM) file io. Depends on
Grassroots DICOM (GDCM).
2011-12-26 21:32:20 +00:00
Stephen Montgomery-Smith
1e8076f1fb - math/mingw32-libgmp4 moved to math/mingw32-libgmp
PR:		ports/163520
2011-12-25 17:07:17 +00:00
Brendan Fabeny
88ece46f9f Add alt-ergo 0.94, an automatic theorem prover dedicated to program
verification.
2011-12-21 02:58:24 +00:00
Sunpoet Po-Chuan Hsieh
597524ca89 - Add p5-Math-Int64 0.17
Math::Int64 adds support for 64 bit integers, signed and unsigned, to Perl.

WWW: http://search.cpan.org/dist/Math-Int64/
2011-12-15 09:22:16 +00:00
Wen Heping
21a331381c This is a Integer to Roman numerals converter.
WWW: http://pypi.python.org/pypi/roman/
2011-10-28 09:14:20 +00:00
Brendan Fabeny
76b053ac69 Add fftw3-quad , Fast Discrete Fourier Transform (Quad Precision C
Routines).
2011-10-17 10:16:32 +00:00
Alberto Villa
a2d3b5a4bc The KDE/FreeBSD team is pleased to announce KDE Software Compilation
4.7.2. The official release notes can be found at:
http://kde.org/announcements/announce-4.7.2.php
This release ships with many improvements. Read more about them here:
http://FreeBSD.kde.org/news.php#itemKDESC472availableinports

We'd like to say thanks to all testers and contributors, especially to
lwhsu@ for his effort on hosting our test packages.

PR:		156293 [1]
		159219 [2]
		160164 [3]
Submitted by:	Oleg Sidorkin <osidorkin@gmail.com> [1]
		Alvaro Castillo <gobledb@gmail.com> [2]
		dkeav04@gmail.com [3]
Tested by:	exp-run via pav
2011-10-17 00:03:42 +00:00
Brendan Fabeny
f4d8472f43 Add fflas-ffpack 1.4.3, a library for dense linear algebra over
word-size finite fields.
2011-10-16 16:10:58 +00:00
Eitan Adler
a418a6d776 pure-rational provides additional operations on the rational number type
provided by the math.pure module in the standard library.

WWW:	http://docs.pure-lang.googlecode.com/hg/pure-rational.html

PR:		ports/161422
Submitted by:	Zhihao Yuan <lichray@gmail.com>
Approved by:	sahil (mentor)
2011-10-15 19:36:40 +00:00
Brendan Fabeny
9ae0f36a60 Add givaro 3.5.0, a C++ library for computer algebra. 2011-10-15 19:13:26 +00:00
Doug Barton
c3ef22e507 Remove ports maintainted by ports@ which have passed their EXPIRATION_DATE
astro/gkrellsun		Abandonware
astro/xrmap		No more distfiles
audio/midimountain	Abandonware
audio/gkrellmss		Abandonware
audio/gnapster		Abandonware
databases/xbase		No more public distfiles
databases/xbsql		No more public distfiles
games/gtkabale		No more public distfiles
games/battleball	No more public distfiles, does not compile on ia64 or sparc64
games/race		No more public distfiles
games/stvef-paks	No more public distfiles
games/stvef-server	No more public distfiles
games/tome		No more public distfiles
games/qkmj		No more public distfiles
games/oilwar		No more public distfiles
games/xbaby		No more public distfiles
games/xword		Abandonware
games/kslide		No more public distfiles
graphics/xmrm		No more public distfiles, does not compile on amd64 or sparc64
graphics/giftrans	Upstream disappeared and distfile is not available
graphics/wildmagic	BROKEN for more than 6 months, does not fetch
irc/ircd-rusnet		No more public distfiles
irc/tkirc		No more public distfiles
korean/mizifont		No more public distfiles
lang/freetxl		No more public distfiles
math/nsc2ke		No more public distfiles
misc/mgp-mode.el	No more public distfiles
multimedia/p5-RIFF-Info	No more public distfiles
net/p5-Net-OpenDHT	No more public distfiles
net/mudix		No more public distfiles
net-im/newsbot		No more public distfiles
net-im/libicq2000	Abandonware
net-im/gossip		No longer maintain by upstream, use net-im/empathy instead
net-im/ickle		Abandonware
net-mgmt/nipper		BROKEN for more than 6 month, does not fetch
net-p2p/mldonkey-serverspy	No more public distfiles
news/p5-Gateway		No more public distfiles
print/epsmerge		No more public distfiles
science/at		No more public distfiles
science/pyvox		No more public distfiles
security/p5-Email-Obfuscate	No more public distfiles
security/libparanoia	No more public distfiles
security/execwrap	No more public distfiles
2011-10-09 02:47:51 +00:00
Brendan Fabeny
9f04bb57b1 Add trlan 201009, thick-restart Lanczos method for eigenproblems. 2011-10-06 15:32:02 +00:00
Brendan Fabeny
7f3eda0a31 Add libocas 0.93, efficient training of SVM classifiers. 2011-10-06 09:53:17 +00:00
Stephen Montgomery-Smith
f609f658ae - Add subdir qhull5 (repocopied from qhull).
PR:		ports/161089
2011-10-03 03:21:42 +00:00
Doug Barton
9766a65fd0 As previously advertised, delete ports that have
vulnerabilities listed in portaudit, and those
that depend on them - part 1

math/mupad
	Relies on xpm, vulnerable since 2004-09-15
net-p2p/torrentflux
	Vulnerable since 2006-10-07
net/tptest
	Vulnerable since 2009-12-17
security/pgp6
	Vulnerable since 2005-07-31
www/p5-RTx-RightsMatrix
	Only works with www/rt36, which is FORBIDDEN
www/p5-RTx-Shredder
	Only works with www/rt36, which is FORBIDDEN
www/p5-RTx-Statistics
	Only works with www/rt36, which is FORBIDDEN
www/plone
	Vulnerable since 2011-02-10
www/pyblosxom
	Vulnerable since 2009-02-11
www/rt36
	Vulnerable since 2009-12-09
www/zope-archetypes
	Depends on www/plone, which is FORBIDDEN
www/zope-calendaring
	Depends on www/plone, which is FORBIDDEN
www/zope-coreblog2
	Depends on www/plone, which is FORBIDDEN
www/zope-i18nlayer
	Depends on www/plone, which is FORBIDDEN
www/zope-plonelanguagetool
	Depends on www/plone, which is FORBIDDEN
www/zope-simpleblog
	Depends on www/plone, which is FORBIDDEN
2011-09-30 09:12:36 +00:00
Stephen Montgomery-Smith
57e974a840 - New port: math/octave-forge-mechanics.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is mechanics.

 Library with functions useful for numerical computation in classical mechanics.
2011-09-27 17:01:49 +00:00
Stephen Montgomery-Smith
feaf5776e3 - New port math/octave-forge-geometry
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is geometry.

 Library for geometric computing extending MatGeom functions. Useful to create,  transform, manipulate and display geometric primitives.
2011-09-27 14:12:09 +00:00
Wen Heping
b26682e3bd Dynare is a software platform for handling a wide class of
economic models, in particular dynamic stochastic general
equilibrium (DSGE) and overlapping generations (OLG) models.

WWW: http://www.dynare.org

PR:		ports/160153
Submitted by:	Fernando <fernando.apesteguia@gmail.com>
2011-09-27 06:35:23 +00:00
Sunpoet Po-Chuan Hsieh
464ac149af - Add p5-Math-Prime-XS 0.24
Math::Prime::XS detects and calculates prime numbers by either applying Modulo
operator division, the Sieve of Eratosthenes, a Summation calculation or Trial
division.

WWW: http://search.cpan.org/dist/Math-Prime-XS/
2011-09-23 18:58:31 +00:00
TAKATSU Tomonari
abfdb194fa - Add a new port: math/R-cran-sandwich
Model-robust standard error estimators for cross-sectional, time
  series and longitudinal data.

  WWW:	http://cran.r-project.org/web/packages/sandwich/
2011-09-23 04:06:18 +00:00
TAKATSU Tomonari
fc855a441b - Add a new port: math/R-cran-spdep
A collection of functions to create spatial weights matrix objects
  from polygon contiguities, from point patterns by distance and
  tesselations, for summarising these objects, and for permitting
  their use in spatial data analysis, including regional aggregation
  by minimum spanning tree; a collection of tests for spatial
  autocorrelation, including global Moran's I, APLE, Geary's C,
  Hubert/Mantel general cross product statistic, Empirical Bayes
  estimates and Assuno/Reis Index, Getis/Ord G and multicoloured join
  count statistics, local Moran's I and Getis/Ord G, saddlepoint
  approximations and exact tests for global and local Moran's I; and
  functions for estimating spatial simultaneous autoregressive (SAR)
  lag and error models, impact measures for lag models, weighted and
  unweighted SAR and CAR spatial regression models, semi-parametric
  and Moran eigenvector spatial filtering, GM SAR error models, and
  generalized spatial two stage least squares models.

  WWW:	http://cran.r-project.org/web/packages/spdep/
2011-09-18 01:38:15 +00:00
TAKATSU Tomonari
5de081ae2f - Add a new port: math/R-cran-deldir
Calculates the Delaunay triangulation and the Dirichlet or Voronoi
  tessellation (with respect to the entire plane) of a planar point
  set.

  WWW:	http://www.math.unb.ca/~rolf/
2011-09-17 23:47:40 +00:00
Stephen Montgomery-Smith
18150e58c1 - New port math/octave-forge-secs3d.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is secs3d.  A Drift-Diffusion simulator for 3d semiconductor devices.
2011-09-12 15:36:31 +00:00
Wen Heping
49b0e9e716 Supports base-2, base-10, base-16, and base-256 numbers.
Uses the GMP or BCMath extensions, if available,
and an internal implementation, otherwise.

WWW: http://pear.php.net/package/Math_BigInteger/

PR:		ports/160211
Submitted by:	Piotr Rybicki <meritus@innervision.pl>
2011-09-08 06:30:15 +00:00
TAKATSU Tomonari
2eef16d59f - Add a new port: math/R-cran-xts
Provide for uniform handling of R's different time-based data classes
  by extending zoo, maximizing native format information preservation
  and allowing for user level customization and extension, while
  simplifying cross-class interoperability.

  WWW:	http://r-forge.r-project.org/projects/xts/
2011-08-30 21:18:51 +00:00
TAKATSU Tomonari
968e974976 - Add a new port: math/R-cran-zoo
An S3 class with methods for totally ordered indexed observations.
  It is particularly aimed at irregular time series of numeric
  vectors/matrices and factors. zoo's key design goals are independence
  of a particular index/date/time class and consistency with ts and
  base R by providing methods to extend standard generics.

  WWW:	http://zoo.r-forge.r-project.org/
2011-08-30 21:14:29 +00:00
Gabor Pali
c10758508f - Remove port for the obsolete (and broken) category-extras Cabal package
Obtained from:	FreeBSD Haskell
2011-08-14 12:04:34 +00:00
Gabor Pali
55c7cc395e Haskell 98 pointed and copointed data.
WWW:	http://github.com/ekmett/copointed/

Obtained from:	FreeBSD Haskell
2011-08-14 11:45:37 +00:00
Gabor Pali
e5971d78ee Comonad transformers.
WWW:	http://github.com/ekmett/comonad-transformers/

Obtained from:	FreeBSD Haskell
2011-08-14 11:38:54 +00:00
Gabor Pali
5e90d88175 Provides a wide array of semigroupoids and operations for working with
semigroupoids.  A Semigroupoid is a Category without the requirement of
identity arrows for every object in the category.

WWW:	http://github.com/ekmett/semigroupoids/

Obtained from:	FreeBSD Haskell
2011-08-14 11:36:29 +00:00
Gabor Pali
7f0fcc2219 Haskell 98 distributive functors -- dual to Traversable.
WWW:	http://github.com/ekmett/distributive/

Obtained from:	FreeBSD Haskell
2011-08-14 11:32:23 +00:00
Gabor Pali
c273e615b8 Haskell 98 contravariant functors.
WWW:	http://github.com/ekmett/contravariant/

Obtained from:	FreeBSD Haskell
2011-08-14 11:30:05 +00:00
Gabor Pali
c80fdabe37 Haskell 98 comonads.
WWW:	http://github.com/ekmett/comonad/

Obtained from:	FreeBSD Haskell
2011-08-14 11:27:44 +00:00
Gabor Pali
c096badde5 Categories from category-extras.
WWW:	http://comonad.com/reader/

Obtained from:	FreeBSD Haskell
2011-08-14 11:22:22 +00:00
Gabor Pali
8fe8aff5f7 Haskell 98 semigroups.
WWW:	http://github.com/ekmett/semigroups/

Obtained from:	FreeBSD Haskell
2011-08-14 11:16:31 +00:00
Baptiste Daroussin
8b6dad2efd Removing old ruby stuff
2011-08-03 comms/ruby-serialport: Doesn't work with Ruby 1.9
2011-08-03 databases/ruby-search-namazu: Doesn't work with Ruby 1.9
2011-08-03 databases/ruby-sqlite: Doesn't work with Ruby 1.9
2011-08-03 databases/rubygem-kirbybase: Doesn't work with Ruby 1.9
2011-08-03 devel/ruby-eet: Doesn't work with Ruby 1.9
2011-08-03 devel/ruby-filelock: Doesn't work with Ruby 1.9
2011-08-03 devel/ruby-filemagic: Doesn't work with Ruby 1.9
2011-08-03 devel/ruby-metaruby: Doesn't work with Ruby 1.9
2011-08-03 devel/ruby-poll: Doesn't work with Ruby 1.9
2011-08-03 devel/ruby-rrb: Doesn't work with Ruby 1.9
2011-08-03 devel/ruby-strongtyping: Doesn't work with Ruby 1.9
2011-08-03 devel/ruby-textbuf: Doesn't work with Ruby 1.9
2011-08-03 graphics/ruby-graph: Doesn't work with Ruby 1.9
2011-08-03 graphics/ruby-libpng: Doesn't work with Ruby 1.9
2011-08-03 japanese/ruby-kakasi: Doesn't work with Ruby 1.9
2011-08-03 lang/ruby-extensions: Doesn't work with Ruby 1.9
2011-08-03 lang/ruby-lua: Doesn't work with Ruby 1.9
2011-08-03 lang/ruby-perl: Doesn't work with Ruby 1.9
2011-08-03 mail/ruby-tmail: Doesn't work with Ruby 1.9
2011-08-03 math/ruby-bitset: Doesn't work with Ruby 1.9
2011-08-03 math/ruby-bitvector: Doesn't work with Ruby 1.9
2011-08-03 math/ruby-gmp: Doesn't work with Ruby 1.9
2011-08-03 net/ruby-mpi: Doesn't work with Ruby 1.9
2011-08-03 net/ruby-nis: Doesn't work with Ruby 1.9
2011-08-03 net/ruby-pcap: Doesn't work with Ruby 1.9
2011-08-03 net/ruby-romp: Doesn't work with Ruby 1.9
2011-08-03 net/ruby-spread: Doesn't work with Ruby 1.9
2011-08-03 print/ruby-pdflib: Doesn't work with Ruby 1.9
2011-08-03 security/ruby-aes: Doesn't work with Ruby 1.9
2011-08-03 security/ruby-blowfish: Doesn't work with Ruby 1.9
2011-08-03 security/ruby-cast_256: Doesn't work with Ruby 1.9
2011-08-03 security/ruby-mcrypt: Doesn't work with Ruby 1.9
2011-08-03 security/ruby-pam: Doesn't work with Ruby 1.9
2011-08-03 sysutils/ruby-log4r: Doesn't work with Ruby 1.9
2011-08-03 textproc/ruby-csv: Doesn't work with Ruby 1.9
2011-08-03 textproc/ruby-formvalidator: Doesn't work with Ruby 1.9
2011-08-03 textproc/ruby-gdome: Doesn't work with Ruby 1.9
2011-08-03 textproc/ruby-htmltools: Doesn't work with Ruby 1.9
2011-08-03 textproc/ruby-nqxml: Doesn't work with Ruby 1.9
2011-08-03 textproc/ruby-quixml: Doesn't work with Ruby 1.9
2011-08-03 textproc/ruby-raspell: Doesn't work with Ruby 1.9
2011-08-03 textproc/ruby-tempura: Doesn't work with Ruby 1.9
2011-08-03 textproc/ruby-xtemplate: Doesn't work with Ruby 1.9
2011-08-03 www/ruby-tmpl: Doesn't work with Ruby 1.9
2011-08-03 06:49:58 +00:00
Baptiste Daroussin
f32b4a646d Bye bye abandonwares (part 4)
2011-08-01 korean/a2ps: Looks like an abandonware, no more public distfiles
2011-08-01 korean/bitchx: Look like an abandonware, no more public distifles
2011-08-01 korean/elm: Look like an abandonware, no more public distifles
2011-08-01 korean/linuxdoc-sgml: Look like an abandonware, no more public distifles
2011-08-01 korean/mod_url: Look like an abandonware, no more public distifles
2011-08-01 korean/nh2ps: Look like an abandonware, no more public distifles
2011-08-01 korean/pinetreefonts: No more public distfile
2011-08-01 mail/bincimap: No more public distfile
2011-08-01 mail/cmail: No more public distfile
2011-08-01 math/hexcalc: Look like an abandonware, no more public distifles
2011-08-01 math/qgfe: Look like an abandonware, no more public distifles
2011-08-01 misc/ewipe: Look like an abandonware, no more public distifles
2011-08-01 misc/gkrellmfmonitor2: Look like an abandonware, no more public distifles
2011-08-01 misc/gkx86info: Look like an abandonware, no more public distifles
2011-08-01 multimedia/goggles: Abandonware, see: http://www.fifthplanet.net/2010/01/dead-projects-goggles-dvd-player.html
2011-08-01 multimedia/ldvd: Abandonware
2011-08-01 multimedia/linux-divx4linux: No more needed
2011-08-01 multimedia/linux-divx4linux4: No more needed
2011-08-01 multimedia/ogle: Abandonware
2011-08-01 multimedia/ogle-gui: Abandonware
2011-08-01 multimedia/okle: Abandonware
2011-08-01 multimedia/subconv: Look like an abandonware, no more public distifles
2011-08-01 net/callgen323: Look like an abandonware, no more public distifles
2011-08-01 net/lyntin: No longer under active development
2011-08-01 net/py-rt: No more public distfiles, looks like an abandonware
2011-08-01 net/rwhoisd: Looks like an abandonware, no more public distfiles
2011-08-01 net/traffic: Looks like an abandonware, no more public distfiles
2011-07-23 net-im/gnomeicu: No longer maintain by upstream, use net-im/empathy instead
2011-08-01 net-mgmt/trafd: Look like an abandonware, no more public distifles
2011-08-01 net-p2p/gkrellm-gift: Look like an abandonware, no more public distifles
2011-08-01 news/bgrab: Looks like an abandonware, no more public distfiles
2011-08-01 news/rkive: Looks like an abandonware, no more public distfiles
2011-08-01 polish/sap: Looks like an abandonware, no more public distfiles
2011-08-01 print/nenscript: Looks like an abandonware, no more public distfiles
2011-08-01 05:24:51 +00:00
Brendan Fabeny
eca4de86aa Add coinmp 1.4.0, optimization library with support for most of COIN-OR
CLP, CBC and CGL.

PR:		158269
Submitted by:	Pedro Giffuni
2011-07-29 14:23:59 +00:00
Brendan Fabeny
57e25ab3c5 remove math/librandlib; attach math/randlib to build;
add an entry to MOVED

PR:		158571
2011-07-28 09:49:59 +00:00
Brendan Fabeny
f2e22bf3cc Add libR , the static libR library from R. 2011-07-28 04:28:30 +00:00
Martin Wilke
6586357830 2011-07-01 math/femlab: No more distfile, looks like abandonware
2011-07-01 japanese/wikicker: Looks like an abandonware
2011-07-01 emulators/vmware3: No more distfiles available. emulators/virtualbox-ose can be used as a replacement
2011-07-02 13:45:43 +00:00
Stephen Montgomery-Smith
d74e55cc9e - New port math/ocamlgsl
ocamlgsl is an interface to GSL (GNU scientific library), for the
Objective Caml langage.

WWW: http://oandrieu.nerim.net/ocaml/gsl/

PR:		ports/156307
Submitted by:	Klaus Aehlig <aehlig@linta.de>
Approved by:	maho (mentor)
2011-06-28 01:49:49 +00:00
Brendan Fabeny
696c6c9517 Add ess 5.13, R support for Emacsen. 2011-06-22 08:22:51 +00:00
Stephen Montgomery-Smith
12f60e0c66 New port math/octave-forge-fuzzy-logic-toolkit
This is fuzzy-logic-toolkit.

A mostly MATLAB-compatible fuzzy logic toolkit for Octave.

The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

WWW: http://octave.sourceforge.net/

PR:		ports/157970
Submitted by:	stephen
Approved by:	maho (mentor)
2011-06-21 01:48:54 +00:00
Stephen Montgomery-Smith
3895d16357 - New port math/octave-forge-octclip
This is octclip.

This package allows to do boolean operations with polygons using the
Greiner-Hormann algorithm.

The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

WWW: http://octave.sourceforge.net/

PR:		ports/157969
Submitted by:	stephen
Approved by:	maho (mentor)
2011-06-21 01:46:10 +00:00
Wen Heping
8e48712e3e NZMATH is a Python based number theory oriented calculation system.
The centre of development in origin is Tokyo Metropolitan University.
It is freely available and distributed under the BSD license.

WWW: http://tnt.math.se.tmu.ac.jp/nzmath/
2011-06-03 08:10:38 +00:00
Wesley Shields
92ac3e83a4 Graph-tool is an efficient python module for manipulation and statistical
analysis of graphs (a.k.a. networks).

WWW:	http://projects.skewed.de/graph-tool/

PR:		ports/157331
Submitted by:	Dikshie <dikshie@sfc.wide.ad.jp>
2011-06-03 00:42:05 +00:00
Brendan Fabeny
14fd7b71ef Add lrng 20110503, uniform random number generators of P. L'Ecuyer and
his colleagues.
2011-05-29 15:38:23 +00:00
Brendan Fabeny
dc711f5047 Add ltl2ba 1.1, fast translation from LTL formulae to Buechi automata. 2011-05-27 18:11:32 +00:00
Brendan Fabeny
faa8bf0e0a Add R-cran-SuppDists , supplementary distributions and RNG for R. 2011-05-07 05:47:52 +00:00
Rene Ladan
b5931512c7 Remove duplicate ports, add relevant lines to MOVED
devel/common_msgs renamed to devel/ros-common_msgs
math/geometry renamed to math/ros-geometry
2011-05-03 21:09:09 +00:00
Rene Ladan
ef35df4fd1 Connect devel/ros-common_msgs and math/ros-geometry to the build. 2011-05-03 20:54:08 +00:00
Baptiste Daroussin
58523e38be remove unmaintained expired ports from math
2011-05-01 math/fudgit: Upstream disapear and distfile is no more available
2011-05-01 math/kaskade: Upstream disapear and distfile is no more available
2011-05-01 math/qscanplot: Upstream disapear and distfile is no more available
2011-05-01 math/rpc: Upstream disapear and distfile is no more available
2011-05-01 math/ss: Upstream disapear and distfile is no more available
2011-05-01 math/wmcalc: Upstream disapear and distfile is no more available
2011-05-02 07:30:25 +00:00
Rene Ladan
48f1d8c469 Remove most expired ports:
2011-04-17 cad/tclspice: has been broken for more than a year
2011-04-17 comms/hcfmdm: does not compile on 7.X or higher
2011-04-17 databases/mysqlcc: has been broken for almost a year
2011-04-17 devel/ruby-rjudy: does not compile on FreeBSD 7.x or newer
2011-04-17 devel/xfc: does not compile on FreeBSD 7.x or newer
2011-04-17 devel/lamson: has been broken for a half year
2011-04-17 devel/cocktail: does not build on FreeBSD 7.x or newer
2011-04-17 devel/djgpp-gcc: has been broken for half a year
2011-04-17 devel/gauche-sdl: has been broken for a year
2011-04-17 devel/gdb53-act: does not compile on FreeBSD 7.x and up
2011-04-17 editors/zed: does not compile on FreeBSD 7.x or newer
2011-04-17 games/aqbubble: does not compile on FreeBSD 7.x or newer
2011-04-17 graphics/libvisual-plugins: has been broken for 3 years
2011-04-17 japanese/roundcube: has been broken for almost a year
2011-04-17 japanese/tkstep80: does not compile on FreeBSD 7.x or newer
2011-04-17 lang/u++: has been broken for over a half year
2011-04-17 lang/pugs: has been broken for over a year
2011-04-17 lang/mozart: does not compile on FreeBSD 7.x or newer
2011-04-17 math/linalg: does not build on FreeBSD 7.x or newer
2011-04-17 math/R-cran-igraph: has been broken for over a half year
2011-04-17 misc/ftree: has been broken for over a half year
2011-04-17 multimedia/katchtv: has been broken for a half year
2011-04-17 multimedia/libomxil-bellagio: has been broken for almost a year
2011-04-17 multimedia/banshee-mirage: has been broken for over a half year
2011-04-17 net-p2p/trackerbt: has been broken for a half year
2011-04-17 net/cap: does not compile on FreeBSD 7.x or newer
2011-04-17 net/ggsd: does not compile on FreeBSD 7.x or newer
2011-04-17 net/b2bua: does not compile on FreeBSD 7.x or newer
2011-04-17 net/penguintv: has been broken for a half year
2011-04-17 news/openftd: has been broken for almost a year
2011-04-17 palm/romeo: does not compile on FreeBSD 7.x or newer
2011-04-17 science/pcp: does not compile on FreeBSD 7.x or newer
2011-04-17 science/elmer-fem: has been broken for over a year
2011-04-17 security/newpki-lib: does not compile on FreeBSD 7.x or newer
2011-04-17 security/newpki-server: does not compile on FreeBSD 7.x or newer
2011-04-17 security/xmlsec: does not compile on FreeBSD 7.x or newer
2011-04-17 security/f-protd: has been broken for over a year
2011-04-17 sysutils/xwlans: does not compile on FreeBSD 7.x or newer
2011-04-17 www/bk_edit: does not compile on FreeBSD 7.x and newer
2011-04-17 www/bricolage: has been broken for a half year
2011-04-17 x11-toolkits/gauche-gtk: has been broken for a year
2011-04-17 x11-toolkits/gambas2-gb-qt: has been broken for over a year
2011-04-17 x11-toolkits/php-gtk2: has been broken for over a half year
2011-04-17 x11-toolkits/p5-Tcl-Tk: has been broken for 2 year
2011-04-17 x11/metisse: has been broken for over a half year
2011-04-18 22:25:41 +00:00
Rene Ladan
0b2ebd1086 Remove expired port:
2011-04-07 math/linux-SHA-1_collision_search_graz: Project discontinued
2011-04-07 22:33:39 +00:00
Martin Wilke
b251294128 Cryptographically-secure, cross-platform replacement for rand()
WWW: http://search.cpan.org/dist/Math-Random-Secure

PR:		ports/155574
Submitted by:	Dereckson <dereckson at gmail.com>
2011-03-17 16:05:22 +00:00
Dmitry Marakasov
b7019609cf Math::Polygon::Tree creates a B-tree of polygon parts for fast check
if object is inside this polygon. This method is effective if polygon
has hundreds or more segments.

WWW:	http://search.cpan.org/dist/Math-Polygon-Tree/
2011-03-12 00:10:39 +00:00
Dmitry Marakasov
d8e1644f10 Math::Geometry::Planar::GPC::Polygon - OO wrapper to gpc library
WWW:	http://search.cpan.org/dist/Math-Geometry-Planar-GPC-Polygon/
2011-03-12 00:09:52 +00:00
Wen Heping
fe1c8ed8db R-cran-mvtnorm computes multivariate normal and t probabilities, quantiles,
random deviates and densities.

WWW: http://cran.r-project.org/package=mvtnorm
2011-03-08 07:57:18 +00:00
Wen Heping
cf5d814d5e Statistics::R will permit the control of the the R (R-project) interpreter
through Perl in different architectures and OS.

WWW: http://search.cpan.org/dist/Statistics-R/
2011-03-07 07:07:18 +00:00
Li-Wen Hsu
28d0044182 Add py-pybloom 1.0.3, a Probabilistic data structure. 2011-02-20 10:04:42 +00:00
Maho Nakata
030a58883d LAPACKE is a standard C language APIs for LAPACK, which introduces
the following features[1]:
- row-major and column-major matrix layout controlled by the first function
parameter;
- an implementation with working arrays (middle-level interface) as well as
without working arrays (high-level interface);
- input scalars passed by value;
- error code as a return value instead of the INFO parameter.

[1] Intel Corporation. "C Interface to LAPACK" README. 2010.

WWW: http://www.netlib.org/lapack/

PR:             153045
Submitted by:   Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp>
2011-02-17 00:47:57 +00:00
Martin Wilke
4212a766e0 The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is fl-core.

  The package contains code for basic functions in Fuzzy Logic for Octave.

WWW: http://octave.sourceforge.net/

PR:		ports/154580
Submitted by:	Stephen Montgomery-Smith <stephen at math.missouri.edu>
2011-02-10 16:28:42 +00:00
Martin Wilke
a415342446 The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is fits.

The Octave-FITS package provides functions for reading, and writing FITS
(Flexible Image Transport System) files. The package supports uses the
libcfitsio library.

WWW: http://octave.sourceforge.net/

PR:		ports/153971
Submitted by:	Stephen Montgomery-Smith <stephen at math.missouri.edu>
Feature safe:	yes
2011-02-05 10:42:51 +00:00
Wen Heping
57f67727fe R-cran-coda is a R module for output analysis and diagnostics for
Markov Chain Monte Carlo simulations.

WWW: http://cran.case.edu/web/packages/coda/index.html

Feature safe:	yes
2011-01-17 07:57:07 +00:00
Max Brazhnikov
75dfa687bc Remove octave-forge-spanish, it has been replaced by octave-forge-es.
PR:		ports/148231
Submitted by:	Stephen Montgomery-Smith <stephen at missouri.edu>
Feature safe:	yes
2011-01-13 09:21:03 +00:00
Jeremy Messenger
00f2c843c5 The x11/libcapplet has been broken for over a year (will be two in June 2011)
and no one has any of interest to fix it. It's an ancient software and
is part of GNOME 1. It's time for us to get rid of some of GNOME 1 stuff as
the GNOME 3 is coming sometimes in 2011. Any ports that required libcappet
are removed and ports that have optional aren't remove.

PR:		ports/153355
Discussed with:	My team, FreeBSD GNOME Team
Tested by:	pointyhat-exp (thanks pav!)
2011-01-04 03:32:21 +00:00
Rene Ladan
b7d7206e33 Garbage-collect expired ports:
2010-12-30 databases/p5-sqlrelay: broken and upstream disapeared
2010-12-30 devel/php-dbg2: No upstream support
2010-12-30 dns/fourcdns: upstream has disapeared
2010-12-31 emulators/win4bsd: Development has ceased and distfile is no longer available
2010-12-31 french/mozilla-flp: www/seamonkey port is deprecated. Consider using the www/firefox-i18n.
2010-12-31 french/xtel: Minitel services will be discontinued at the end of 2010.
2010-12-30 ftp/ftpq: upstream has disapeared
2010-12-30 graphics/paintlib: does not compile with new tiff and no more maintained upstream
2010-12-30 graphics/g3dviewer: does not build with gcc 4.2, upstream disapeared
2010-12-30 lang/scriba: Does not compile with gcc 4.2+, looks like abandonware
2010-12-30 math/rascal: Broken on every arch since 2008, looks like an abandonware
2010-12-31 net-mgmt/nrg: Project has vanished. Use cacti instead.
2010-12-31 security/hostsentry: Project is dead.
2010-12-31 sysutils/kcube: Project has vanished
2010-12-31 www/cybercalendar: has been unmaintained since 2001 and is unusable with dates after 2010 (see ports/150974)
2010-12-31 www/flock: Flock 3 moves from Firefox to Chromium
2010-12-31 www/linux-flock: Flock 3 moves from Firefox to Chromium
2010-12-30 x11-clocks/xtu: Looks like abandonware

Leave java/tya in for now, as it has outstanding PRs.
2010-12-31 17:35:17 +00:00
Nicola Vitale
36d8a857f9 ParMGridGen-1.0 is a highly optimized serial and parallel library
for obtaining a sequence of successive coarse grids that are well suited
for geometric multigrid methods.
The quality of the elements of the coarse grids is optimized using a
multilevel framework.
The parallel library is based on MPI and is portable to
a wide range of architectures.

WWW: http://www.mgnet.org/mgnet-codes-parmgridgen.html

PR:		ports/152506
Submitted by:	Stas Timokhin <devel at stasyan.com>
2010-12-15 16:48:09 +00:00
Philip M. Gollucci
2431878e6b Provides support for big integer calculations. Not intended to be used
by other modules. Other modules which sport the same functions can
also be used to support Math::BigInt, like Math::BigInt::GMP or
Math::BigInt::Pari.

WWW:	http://search.cpan.org/dist/Math-BigInt-FastCalc/

PR:		ports/152635
Submitted by:	Gea-Suan Lin <gslin at gslin.org>
2010-12-07 04:10:42 +00:00
Rene Ladan
d441d95202 The basic geometry and math libraries used in ROS.
angles:
Provides a set of simple math utilities to work with angles. The utilities cover
simple things like normalizing an angle and conversion between degrees and
radians, but also functions to calculate things like the shortest angular
distance between two joinst space positions of your robot, with the joint motion
constrained by joint limits.

bullet:
Contains version 2.76 of the Bullet professional free 3D Game Multiphysics
Library. The Bullet library provided by this ROS package is slightly different
from the official Bullet release.

eigen:
This package contains version 2.0.15 of the Eigen C++ template library for
linear algebra.

KDL:
This package contains a recent version of the Kinematics and Dynamics Library
(KDL), distributed by the Orocos Project. For stability reasons, this package
is currently locked to revision 31715, but this revision will be updated on a
regular basis to the latest available KDL trunk.

tf:
tf is a package that lets the user keep track of multiple coordinate frames
over time. tf maintains the relationship between coordinate frames in a tree
structure buffered in time, and lets the user transform points, vectors, etc
between any two coordinate frames at any desired point in time.

WWW: http://www.ros.org/wiki/geometry
2010-11-24 16:06:52 +00:00
Philip M. Gollucci
8a89576841 This module provides a perl interface to the DCDFLIB. See the section
on DCDFLIB for more information.

Functions are available for 7 continuous distributions (Beta,
Chi-square, F, Gamma, Normal, Poisson and T-distribution) and for two
discrete distributions (Binomial and Negative Binomial). Optional
non-centrality parameters are available for the Chi-square, F and
T-distributions. Cumulative probabilities are available for all 9
distributions and quantile functions are available for the 7
continuous distributions.

WWW:	http://search.cpan.org/dist/Math-CDF/

PR:		ports/152204
Submitted by:	Gea-Suan Lin <gslin at gslin.org>
2010-11-16 03:04:20 +00:00
Wen Heping
5745b0e03d Another Python Graph Library is a simple, fast and easy to use graph library
with some machine learning features. The main features are as follows:

    * Directed, undirected and multigraphs designed under a hierarchical
class structure
    * Sparse and Dense graph structures using numpy and scipy for fast linear
algebra computations
    * Many operations on graphs such as subgraphs, search, Floyd-Warshall,
Dijkstras algorithm
    * Erdos-Renyi, Small-World and Albert-Barabasi random graphs
    * Write to Pajek, and simple CSV files
    * Some machine learning features - data preprocessing, kernels, PCA, KCCA,
wrappers for LibSVM, and some mlpy learning algorithms
    * Unit tested using the Python unittest framework

WWW:   http://packages.python.org/apgl/
2010-10-28 13:20:08 +00:00
Wen Heping
84c1524854 libtsnnls is a fast solver for least-squares problems in the
form Ax = b under the constraint that all entries in the
solution vector x are non-negative.

WWW: http://www.jasoncantarella.com/webpage/index.php?title=Tsnnls

PR:		ports/151519
Submitted by:	Tz-Huan Huang <tzhuan@gmail.com>
2010-10-19 11:00:55 +00:00
Jimmy Olgeni
29887f7508 Add JTransforms, an open source, multithreaded FFT library written
in pure Java.
2010-10-01 11:21:23 +00:00
Max Brazhnikov
7d2081dcb4 Connect giacxcas 2010-09-21 15:30:11 +00:00
Wen Heping
47bbadc41e R-psych provides a number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale construction using
factor analysis, cluster analysis and reliability analysis, although others
provide basic descriptive statistics. Functions for simulating particular item
and test structures are included. Several functions serve as a useful front end
for structural equation modeling. Graphical displays of path diagrams, factor
analysis and structural equation models are created using basic graphics. Some
of the functions are written to support a book on psychometrics as well as
publications in personality research.

WWW:    http://cran.r-project.org/web/packages/psych/index.html

PR:		ports/150600
Submitted by:	Dan Rue <drue@therub.org>
2010-09-16 10:38:39 +00:00
Max Brazhnikov
84dcbd93ce Connect octave-forge-dataframe 2010-08-29 15:35:42 +00:00
Brendan Fabeny
6d50128666 Add levmar 2.5, a GPL-licensed library implementing the
Levenberg-Marquardt algorithm.

PR:		ports/146683
Submitted by:	Eijiro Shibusawa <ej-sib at ice.uec.ac.jp>
Approved by:	makc (co-mentor)
2010-08-25 06:42:48 +00:00
Brendan Fabeny
ec798d26fc Add x12arima 0.3, x-12-ARIMA seasonal adjustment program.
PR:		ports/148098
Submitted by:	jh at jameshoward.us
Approved by:	makc (co-mentor)
2010-08-21 16:04:45 +00:00
Jose Alonso Cardenas Marquez
639fe47eba - New port: math/fpc-gmp
Free Pascal interface to gmp library

PR:		146001
Submitted by:	Christopher Key <cjk32 at cam.ac.uk>
2010-08-16 18:07:49 +00:00
Wen Heping
714db4465a numexpr - Fast numerical array expression evaluator for Python and NumPy.
The numexpr package evaluates multiple-operator array expressions many times
faster than NumPy can. It accepts the expression as a string, analyzes it,
rewrites it more efficiently, and compiles it to faster Python code on the fly.
It's the next best thing to writing the expression in C and compiling it with
a specialized just-in-time (JIT) compiler, i.e. it does not require a compiler
at runtime.

Also, numexpr has support for the Intel VML (Vector Math Library) -- integrated
in Intel MKL (Math Kernel Library) --, allowing nice speed-ups when computing
transcendental functions (like trigonometrical, exponentials...) on top of
Intel-compatible platforms. This support also allows to use multiple cores in
your computations.

WWW: http://code.google.com/p/numexpr/

PR:		ports/148372
Submitted by:	Ju Pengfei <jupengfei@gmail.com>
Feature safe:	yes
2010-07-05 08:18:12 +00:00
Wen Heping
e1daee4b97 Algorithm::KMeans is a perl5 module for the clustering of numerical data
in multidimensional spaces. Since the module is entirely in Perl (in the
sense that it is not a Perl wrapper around a C library that actually does
the clustering), the code in the module can easily be modified to experiment
with several aspects of automatic clustering. For example, one can change
the criterion used to measure the "distance" between two data points, the
stopping condition for accepting final clusters, the criterion used for
measuring the quality of the clustering achieved, etc.

WWW: http://search.cpan.org/dist/Algorithm-KMeans

Feature safe:	yes
2010-07-01 04:16:41 +00:00
Sylvio Cesar Teixeira
d87784ce02 The octave-forge package is the result of the GNU Octave Repositry project, which is intended to be a central location for custom scripts, functions and extensions for GNU Octave, contains the source for all the functions plus build and install scripts.
This is parallel.

Parallel execution package for cluster computers. For parallel execution on a single machine see e.g. function parcellfun (author: Jaroslav Hajek) in package general.

WWW:	http://octave.sourceforge.net/

PR:		ports/147603
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu>
Feature safe:	yes
2010-06-29 12:14:10 +00:00
Sylvio Cesar Teixeira
e3006c29d4 The octave-forge package is the result of The GNU Octave Repositry Project, which is intended to be a central location for custom scripts, functions and extensions for GNU Octave, contains the source for all the functions plus build and install scripts.
This is gnuplot.

Scripts to save data in gnuplot-readable formats, spectify gnuplot commands that will be used to produce graphics, and call gnuplot. See help g_ez quickly produce the most common plots.

WWW:	http://octave.sourceforge.net/

PR:		ports/147602
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu>
Feature safe:	yes
2010-06-29 12:08:25 +00:00
Sylvio Cesar Teixeira
ad97a8683c The octave-forge package is the result of the GNU Octave Repositry project, which is intended to be a central location for custom scripts, funcitons and extensions for GNU Octave, contains the source for all the functions plus build and install scripts.
This is fenv.

On supported architectures, change the rounding mode of the floating point arithmetics (to nearest, up, down, to zero) or change the precision of the test the properties of the floating point arithmetics.

WWW:	http://octave.sourceforge.net/

PR:		ports/147601
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu>
Feature safe:	yes
2010-06-29 12:03:07 +00:00
Sylvio Cesar Teixeira
73565302ab The octave-forge package is the result of The GNU Octave Repositry Project, which is intended to be a central location for custom scripts, functions plus build and install scripts.
This is es.

Spanish package for the construction of native language translations of Octave funcitons.

WWW:	http://octave.sourceforge.net/

PR:		ports/147600
Submitted by:	Stephen Montgomey-Smith <stephen@missouri.edu>
Feature safe:	yes
2010-06-29 11:58:05 +00:00
Sylvio Cesar Teixeira
d0b4b366a5 The octave-forge package is the result of the GNU Octave Repositry Project, which is intended to be a central location for custom scripts, functions plus build and install scripts.
This is octproj.

This package allows to call functions of PROJ.4 library for cartographic projections transformations.

WWW:	http://octave.sourceforge.net/

PR:		ports/147517
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu>
Feature safe:	yes
2010-06-29 11:53:37 +00:00
Wen Heping
d40fb33f05 - Connect math/rpy2
Feature safe:	yes
2010-06-27 03:02:25 +00:00
Wesley Shields
a5691f37d9 This library is a C port of the implementation of Limited-memory
Broyden-Fletcher-Goldfarb-Shanno (L-BFGS) method written by Jorge Nocedal.
The original FORTRAN source code is available at:
http://www.ece.northwestern.edu/~nocedal/lbfgs.html

WWW:	http://www.chokkan.org/software/liblbfgs/

PR:		ports/147670
Submitted by:	Hung-Yi Chen <gaod@hychen.org>
Feature safe:	yes
2010-06-22 01:55:00 +00:00
Max Brazhnikov
eb464769c4 Connect octave-forge-actuarial
Feature safe:	yes
2010-06-19 21:49:01 +00:00
Kevin Lo
1c6777665b Initial import of p5-Math-RPN 1.09.
Math::RPN is a Perl extension for Reverse Polish Math Expression Evaluation
2010-06-01 05:50:11 +00:00
Pav Lucistnik
85c15ce165 - Rename libranlib to librandlib 2010-05-17 08:34:30 +00:00
Wen Heping
3afe5913a1 The module provides a method to calculate geographic distances
between coordinates in geodetic WGS84 format using the Haversine
formula.

It is similar to GIS::Distance, but without the extra bells and
whistles and without the additional dependencies. Same great taste,
less filling. It exists for those who cannot, or prefer not to
install Moose and its dependencies.

WWW:    http://search.cpan.org/dist/GIS-Distance-Lite/
2010-05-14 13:56:24 +00:00
Martin Wilke
5c51d5a546 libranlip is a C++ library created by G. Beliakin, which generates random
variates with arbitrary Lipschitz-continuous densities via the acceptance /
rejection method. The density should have a dimension of no more than about
five. The user needs to supply the density function using a simple syntax, and
then call the methods of construction and generation provided in libranlip.

WWW: http://www.deakin.edu.au/~gleb/ranlip.html

PR:		ports/143624
Submitted by:	bf <bf1783 at gmail.com>
2010-05-09 08:26:50 +00:00
Wen Heping
20991137bf R-cran-inline is a functionality to dynamically define R functions
and S4 methods with in-lined C, C++ or Fortran code supporting .C
and .Call calling conventions.

WWW:    http://cran.r-project.org/web/packages/inline/
2010-05-08 08:13:40 +00:00
Wen Heping
06613f3ac6 ANN is a library written in C++, which supports data structures
and algorithms for both exact and approximate nearest neighbor
neighbor searching in arbitrarily high dimensions.

WWW:    http://www.cs.umd.edu/~mount/ANN/

PR:		ports/145996
Submitted by:	Tz-Huan Huang <tzhuan@csie.org>
2010-05-06 08:14:51 +00:00
Martin Wilke
02331ba6e0 2010-04-30 audio/py-flac: has been marked IGNORE for past 24 months
2010-02-20 databases/mysql-connector-java50: Old version: please use databases/mysql-connector-java instead
2010-04-15 databases/p5-DBIx-Class-HTML-FormFu: This module is obsoleted by www/p5-HTML-FormFu-Model-DBIC
2010-04-29 devel/py-rbtree: "does not build with new pyrex and it's not active maintained"
2010-04-08 devel/tavrasm: No longer maintained, use devel/avra instead
2010-04-27 mail/postfix23: it's no longer maintened by upstream developer
2010-04-30 math/libgmp4: Use math/gmp instead.
2010-04-04 misc/ezload: does not build with new USB stack in 8-STABLE
2010-01-31 misc/gkrellmbgchg: use misc/gkrellmbgchg2
2010-03-04 multimedia/kbtv: no longer under development by author
2010-02-16 net/plb: broken; abandoned by author; use net/relayd or www/nginx instead
2010-04-30 security/vpnd: This software is no longer developed
2010-03-15 textproc/isearch: abandoned upstream, uses an obsolete version of GCC, not used by any other port
2010-04-02 www/caudium12: No longer maintained upstream, please switch to www/caudium14
2010-03-08 www/p5-Catalyst-Plugin-Cache-FileCache: Deprecated by module author in favor of www/p5-Catalyst-Plugin-Cache
2010-05-02 10:45:51 +00:00
Dirk Meyer
d111d16900 - PHP 5.2 slave port
PR:		145772
Submitted by:	Alex Keda
2010-04-23 15:53:34 +00:00