Commit graph

226 commits

Author SHA1 Message Date
Doug Barton
a1b8c7234f Remove ports@ ports that have been DEPRECATED for at least 1 month
audio/shoutcast		Unfetchable; website rearranged
audio/linux-shoutcast	Unfetchable; website rearranged
chinese/scim-chewing	Does not configure
converters/py-cjkcodecs	Integrated into every python version in the tree
databases/kpogre	Does not compile
deskutils/mhc		Does not fetch
deskutils/org-mode.el6	Does not fetch
deskutils/gemcal	Does not fetch
devel/erlang-thrift	Does not build
dns/domtools		Does not fetch
editors/richtext	Does not compile
games/vultures-claw	Does not fetch
games/bomb		Does not fetch
games/lgeneral-data	Bad plist
games/linux-enemyterritory-jaymod	Does not fetch
games/xphotohunter	Does not fetch
graphics/gimpshop	Fails to patch
graphics/lightspark-devel	Does not compile
graphics/xmms-plazma	Does not fetch
graphics/py-cgkit	Does not fetch, does not compile on ia64, powerpc, or sparc64
japanese/rxvt		Does not fetch, fails to build with new utmpx
japanese/epic4		Some distfiles do not fetch
java/jde		Does not fetch
java/kaffe		Does not fetch
korean/gdick	HTMLs from the Yahoo! Korea Dictionary cannot be parsed, other runtime problems
korean/hanterm-xf86	Does not compile
korean/stardict2-dict-kr Does not fetch
lang/p5-JavaScript	Does not fetch
lang/TenDRA	Website disappeared; last release 2006, Does not compile on recent FreeBSD-9
mail/freepops		Does not build
mail/itraxp		Does not build
misc/tellico		Leaves file behind on deinstall
net/gsambad		Does not fetch
net/nocatauth-gateway	Uses a UID registered to another port
net/nocatauth-server	Uses a UID registered to another port
net/libosip2		Does not fetch
net/kmuddy		Does not fetch
net/netboot		Does not build
net-mgmt/jffnms		Does not fetch
net-p2p/frostwire	Does not fetch
net-p2p/azureus		Does not fetch
news/cleanscore		Does not fetch
news/nntpswitch		Does not fetch
news/p5-NewsLib		Does not fetch
russian/cyrproxy	Does not fetch
science/gerris		Does not fetch
security/opensaml	Does not fetch
sysutils/wmbattery	Does not fetch
sysutils/cpuburn	No more public distfiles
textproc/tei-guidelines-p4	Does not fetch
textproc/tei-p4		Does not fetch
textproc/py-hyperestraier	Does not fetch
textproc/tdtd.el	Does not fetch
textproc/tei-lite	Does not fetch
www/phpwiki13		Does not fetch
www/p5-Apache-Scoreboard	Depends on mod_perl
www/p5-B-LexInfo	Broken due the new mod_perl2 API
www/phpwiki		Does not fetch
www/smb2www		Apache13 is deprecated, migrate to 2.2.x+ now
www/spip		Checksum is changing daily
www/monkey		Does not fetch
x11-toolkits/jdic	Does not fetch
x11-toolkits/py-kde	Does not compile
2011-11-02 01:35:45 +00:00
Alberto Villa
a2d3b5a4bc The KDE/FreeBSD team is pleased to announce KDE Software Compilation
4.7.2. The official release notes can be found at:
http://kde.org/announcements/announce-4.7.2.php
This release ships with many improvements. Read more about them here:
http://FreeBSD.kde.org/news.php#itemKDESC472availableinports

We'd like to say thanks to all testers and contributors, especially to
lwhsu@ for his effort on hosting our test packages.

PR:		156293 [1]
		159219 [2]
		160164 [3]
Submitted by:	Oleg Sidorkin <osidorkin@gmail.com> [1]
		Alvaro Castillo <gobledb@gmail.com> [2]
		dkeav04@gmail.com [3]
Tested by:	exp-run via pav
2011-10-17 00:03:42 +00:00
Doug Barton
c3ef22e507 Remove ports maintainted by ports@ which have passed their EXPIRATION_DATE
astro/gkrellsun		Abandonware
astro/xrmap		No more distfiles
audio/midimountain	Abandonware
audio/gkrellmss		Abandonware
audio/gnapster		Abandonware
databases/xbase		No more public distfiles
databases/xbsql		No more public distfiles
games/gtkabale		No more public distfiles
games/battleball	No more public distfiles, does not compile on ia64 or sparc64
games/race		No more public distfiles
games/stvef-paks	No more public distfiles
games/stvef-server	No more public distfiles
games/tome		No more public distfiles
games/qkmj		No more public distfiles
games/oilwar		No more public distfiles
games/xbaby		No more public distfiles
games/xword		Abandonware
games/kslide		No more public distfiles
graphics/xmrm		No more public distfiles, does not compile on amd64 or sparc64
graphics/giftrans	Upstream disappeared and distfile is not available
graphics/wildmagic	BROKEN for more than 6 months, does not fetch
irc/ircd-rusnet		No more public distfiles
irc/tkirc		No more public distfiles
korean/mizifont		No more public distfiles
lang/freetxl		No more public distfiles
math/nsc2ke		No more public distfiles
misc/mgp-mode.el	No more public distfiles
multimedia/p5-RIFF-Info	No more public distfiles
net/p5-Net-OpenDHT	No more public distfiles
net/mudix		No more public distfiles
net-im/newsbot		No more public distfiles
net-im/libicq2000	Abandonware
net-im/gossip		No longer maintain by upstream, use net-im/empathy instead
net-im/ickle		Abandonware
net-mgmt/nipper		BROKEN for more than 6 month, does not fetch
net-p2p/mldonkey-serverspy	No more public distfiles
news/p5-Gateway		No more public distfiles
print/epsmerge		No more public distfiles
science/at		No more public distfiles
science/pyvox		No more public distfiles
security/p5-Email-Obfuscate	No more public distfiles
security/libparanoia	No more public distfiles
security/execwrap	No more public distfiles
2011-10-09 02:47:51 +00:00
Wen Heping
97bc628e9d eco is a publicly available R package that implements the Bayesian
and likelihood methods proposed in Imai, Lu, and Strauss (2008) for
ecological inference in $2 \times 2$ tables as well as the method
of bounds introduced by Duncan and Davis (1953).

WWW: http://imai.princeton.edu/software/eco.html
2011-09-28 07:33:03 +00:00
TAKATSU Tomonari
7f304cff48 - Add a new port: science/R-cran-DCluster
A set of functions for the detection of spatial clusters of disease
  using count data. Bootstrap is used to estimate sampling distributions
  of statistics.

  WWW:	http://cran.r-project.org/web/packages/DCluster/
2011-09-18 02:47:50 +00:00
TAKATSU Tomonari
78ed5f9954 - Add a new port: science/R-cran-Epi
Functions for demographic and epidemiological analysis in the Lexis
  diagram, i.e. register and cohort follow-up data, including interval
  censored data and representation of multistate data. Also some
  useful functions for tabulation and plotting. Contains some
  epidemiological datasets.

  WWW:	http://www.pubhealth.ku.dk/~bxc/Epi/
2011-09-17 06:55:27 +00:00
Baptiste Daroussin
840edf80f1 Remove some expired ports
2011-08-01 audio/rio: Look like an abandonware, no more public distfile
2011-08-02 audio/ruby-musicextras: Upcoming ruby-gnome removes dependencies
2011-08-02 deskutils/sshmenu: Upcoming ruby-gnome removes dependencies
2011-08-02 japanese/gsuica: Upcoming ruby-gnome removes dependencies
2011-08-02 science/gave: Upcoming ruby-gnome removes dependencies
2011-08-02 x11-themes/gnome-art: Upcoming ruby-gnome removes dependencies
2011-08-02 x11-themes/gnome-splashscreen-manager: Upcoming ruby-gnome removes dependencies
2011-08-02 06:31:29 +00:00
Brendan Fabeny
66779351d9 remove science/bblimage; attach science/pyvox to build;
add an entry to MOVED

PR:		158562
2011-07-28 09:56:34 +00:00
Stephen Montgomery-Smith
ee4d9c29dd - New port science/py-ws2300
Ws2300 manipulates the LaCrosse WS-2300 weather station via its RS232
interface. It can read and write values, and can continuously log data
from WS-2300 to a file or SQL database.

WWW: http://ace-host.stuart.id.au/russell/files/ws2300/

PR:		ports/153452
Submitted by:	Stefan Bethke <stb@lassitu.de>
Approved by:	gabor (mentor)
2011-07-01 20:23:41 +00:00
Wen Heping
195e2f8d16 obspy.imaging provides tools for displaying features used in seismology.
WWW: http://www.obspy.org/
2011-06-29 08:18:07 +00:00
Wen Heping
d0893a7fa0 The obspy.xseed package contains methods in order to read, write and
convert seismological meta data files in the Dataless SEED, RESP and
XML-SEED format.

WWW: http://www.obspy.org/
2011-06-29 08:13:17 +00:00
Sunpoet Po-Chuan Hsieh
e4c4b95666 - Add p5-Geo-Coordinates-Converter-iArea 0.14
Geo::Coordinates::Converter::iArea is utilities for DoCoMo iArea.

WWW: http://search.cpan.org/dist/Geo-Coordinates-Converter-iArea/
2011-06-12 16:18:59 +00:00
Baptiste Daroussin
0b10dff092 Another bunch of expired ports removal
2011-05-01 audio/albumart: Upstream disapear and distfile is no more available
2011-05-01 audio/aylet: Upstream disapear and distfile is no more available
2011-05-01 audio/cantus: Upstream disapear and distfile is no more available
2011-05-01 audio/xaylet: Upstream disapear and distfile is no more available
2011-05-01 science/oases: Upstream disapear and distfile is no more available
2011-05-01 shells/pash: Upstream disapear and distfile is no more available
2011-05-03 13:05:08 +00:00
Rene Ladan
48f1d8c469 Remove most expired ports:
2011-04-17 cad/tclspice: has been broken for more than a year
2011-04-17 comms/hcfmdm: does not compile on 7.X or higher
2011-04-17 databases/mysqlcc: has been broken for almost a year
2011-04-17 devel/ruby-rjudy: does not compile on FreeBSD 7.x or newer
2011-04-17 devel/xfc: does not compile on FreeBSD 7.x or newer
2011-04-17 devel/lamson: has been broken for a half year
2011-04-17 devel/cocktail: does not build on FreeBSD 7.x or newer
2011-04-17 devel/djgpp-gcc: has been broken for half a year
2011-04-17 devel/gauche-sdl: has been broken for a year
2011-04-17 devel/gdb53-act: does not compile on FreeBSD 7.x and up
2011-04-17 editors/zed: does not compile on FreeBSD 7.x or newer
2011-04-17 games/aqbubble: does not compile on FreeBSD 7.x or newer
2011-04-17 graphics/libvisual-plugins: has been broken for 3 years
2011-04-17 japanese/roundcube: has been broken for almost a year
2011-04-17 japanese/tkstep80: does not compile on FreeBSD 7.x or newer
2011-04-17 lang/u++: has been broken for over a half year
2011-04-17 lang/pugs: has been broken for over a year
2011-04-17 lang/mozart: does not compile on FreeBSD 7.x or newer
2011-04-17 math/linalg: does not build on FreeBSD 7.x or newer
2011-04-17 math/R-cran-igraph: has been broken for over a half year
2011-04-17 misc/ftree: has been broken for over a half year
2011-04-17 multimedia/katchtv: has been broken for a half year
2011-04-17 multimedia/libomxil-bellagio: has been broken for almost a year
2011-04-17 multimedia/banshee-mirage: has been broken for over a half year
2011-04-17 net-p2p/trackerbt: has been broken for a half year
2011-04-17 net/cap: does not compile on FreeBSD 7.x or newer
2011-04-17 net/ggsd: does not compile on FreeBSD 7.x or newer
2011-04-17 net/b2bua: does not compile on FreeBSD 7.x or newer
2011-04-17 net/penguintv: has been broken for a half year
2011-04-17 news/openftd: has been broken for almost a year
2011-04-17 palm/romeo: does not compile on FreeBSD 7.x or newer
2011-04-17 science/pcp: does not compile on FreeBSD 7.x or newer
2011-04-17 science/elmer-fem: has been broken for over a year
2011-04-17 security/newpki-lib: does not compile on FreeBSD 7.x or newer
2011-04-17 security/newpki-server: does not compile on FreeBSD 7.x or newer
2011-04-17 security/xmlsec: does not compile on FreeBSD 7.x or newer
2011-04-17 security/f-protd: has been broken for over a year
2011-04-17 sysutils/xwlans: does not compile on FreeBSD 7.x or newer
2011-04-17 www/bk_edit: does not compile on FreeBSD 7.x and newer
2011-04-17 www/bricolage: has been broken for a half year
2011-04-17 x11-toolkits/gauche-gtk: has been broken for a year
2011-04-17 x11-toolkits/gambas2-gb-qt: has been broken for over a year
2011-04-17 x11-toolkits/php-gtk2: has been broken for over a half year
2011-04-17 x11-toolkits/p5-Tcl-Tk: has been broken for 2 year
2011-04-17 x11/metisse: has been broken for over a half year
2011-04-18 22:25:41 +00:00
Martin Wilke
c72b94c30a AI4R is a collection of ruby algorithms implementations,
covering several Artificial intelligence fields.  It implements:

 * Genetic algorithms
 * Self-organized maps (SOM)
 * Neural Networks
    - Multilayer perceptron with Backpropagation learning
    - Hopfield net
 * Automatic classifiers (Machine Learning)
    - ID3 (Decision Trees)
    - PRISM (J. Cendrowska, 1987)
    - Multilayer Perceptron
    - OneR (AKA One Attribute Rule, 1R)
    - ZeroR
    - Hyperpipes
    - Naive Bayes
    - IB1 (D. Aha, D. Kibler - 1991)
 * Data clustering
    - K-means
    - Bisecting k-means
    - Single linkage
    - Complete linkage
    - Average linkage
    - Weighted Average linkage
    - Centroid linkage
    - Median linkage
    - Ward's method linkage
    - Diana (Divisive Analysis)

WWW: http://ai4r.rubyforge.org/

PR:		ports/155699
Submitted by:	Eric Freeman <freebsdports at chillibear.com>
2011-03-25 12:08:20 +00:00
Wen Heping
bb12e102f3 The obspy.wav package contains methods in order to read and write
seismogram files in the WAV(audio) format. The data are squeezed to
audible frequencies.

ObsPy is an open-source project dedicated to provide a Python framework
for processing seismological data. It provides parsers for common
file formats and seismological signal processing routines which allow
the manipulation of seismological time series (see Beyreuther et. al.
2010). The goal of the ObsPy project is to facilitate rapid application
development for seismology.

WWW: http://www.obspy.org/
2011-03-21 06:28:57 +00:00
Steve Wills
cae009169c h5utils is a set of utilities for visualization and conversion of
scientific data in the free, portable HDF5 format.

Besides providing a simple tool for batch visualization as PNG images,
h5utils also includes programs to convert HDF5 datasets into the formats
required by other free visualization software (e.g. plain text, Vis5d,
and VTK).

WWW: http://ab-initio.mit.edu/wiki/index.php/H5utils

PR:		ports/155482
Submitted by:	Klaus Aehlig <aehlig at linta.de>
2011-03-18 19:42:35 +00:00
Wen Heping
f56fbc67a7 - Remove py-obspy.core because the default cvsupd configuration (cvsignore to be exact) prevents the download of files named *.core, use py-obspy-core instead
Thanks to:	dougb@, cperciva@, demelier.david@gmail.com
2011-03-16 09:56:38 +00:00
Wen Heping
3eabb018e9 The obspy.core package contains common methods and classes
for ObsPy. It includes UTCDateTime, Stats, Stream and Trace
classes and methods for reading seismograms.

ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides
parsers for common file formats and seismological signal
processing routines which allow the manipulation of
seismological time series (see Beyreuther et. al. 2010).
The goal of the ObsPy project is to facilitate rapid application
development for seismology.

WWW: http://www.obspy.org/
2011-03-16 08:46:36 +00:00
Wen Heping
ac49b69bf5 The obspy.signal package contains signal processing routines
for seismology. Capabilities include filtering, triggering,
rotation, instrument correction and coordinate transformations.

ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides parsers
for common file formats and seismological signal processing
routines which allow the manipulation of seismological time
series (see Beyreuther et. al. 2010). The goal of the ObsPy
project is to facilitate rapid application development for seismology.

WWW: http://www.obspy.org/
2011-03-14 14:09:29 +00:00
Wen Heping
53ab78064b This module contains Python wrappers for gse_functions - The GSE2 library
of Stefan Stange (http://www.orfeus-eu.org/Software/softwarelib.html#gse).
Currently CM6 compressed GSE2 files are supported, this should be sufficient
for most cases. Gse_functions are written in C and interfaced via Python
ctypes.

WWW: http://www.obspy.org/
2011-03-14 14:05:40 +00:00
Wen Heping
beaa8282a4 This module contains Python wrappers for libmseed - The MiniSeed
library of Chad Trabant. Libmseed is written in C and interfaced
via Python ctypes.

WWW: http://www.obspy.org/
2011-03-14 13:08:04 +00:00
Wen Heping
a84b4427a2 The obspy.core package contains common methods and classes
for ObsPy. It includes UTCDateTime, Stats, Stream and Trace
classes and methods for reading seismograms.

ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides
parsers for common file formats and seismological signal
processing routines which allow the manipulation of
seismological time series (see Beyreuther et. al. 2010).
The goal of the ObsPy project is to facilitate rapid application
development for seismology.

WWW: http://www.obspy.org/
2011-03-14 13:04:03 +00:00
Wen Heping
ca7b73fa17 BUFR = Binary Universal Form for the Representation of meteorological data.
BUFR is approved by WMO (World Meteorological Organization) as the standard
universal exchange format for meteorological observations, gradually
replacing a lot of older alphanumeric data formats.

This module provides methods for decoding and encoding BUFR messages, and
for displaying information in BUFR B and D tables and in BUFR flag and code
tables.

Installing this module also installs some programs: bufrread.pl,
bufrresolve.pl, bufrencode.pl, bufr_reencode.pl and bufralter.pl. See
https://wiki.met.no/bufr.pm/start for examples of use. For the majority of
potential users of Geo::BUFR I would expect these programs to be all that
you will need Geo::BUFR for.

WWW: http://search.cpan.org/dist/Geo-BUFR/
2011-03-10 06:15:55 +00:00
Wen Heping
267e104201 bayesm covers many important models used in marketing and micro-econometrics
applications. The package includes: Bayes Regression (univariate or
multivariate dep var), Bayes Seemingly Unrelated Regression (SUR), Binary and
Ordinal Probit, Multinomial Logit (MNL) and Multinomial Probit (MNP),
Multivariate Probit, Negative Binomial (Poisson) Regression, Multivariate
Mixtures of Normals (including clustering), Dirichlet Process Prior Density
Estimation with normal base, Hierarchical Linear Models with normal prior and
covariates, Hierarchical Linear Models with a mixture of normals prior and
covariates, Hierarchical Multinomial Logits with a mixture of normals prior
and covariates, Hierarchical Multinomial Logits with a Dirichlet Process
prior and covariates, Hierarchical Negative Binomial Regression Models,
Bayesian analysis of choice-based conjoint data, Bayesian treatment of linear
instrumental variables models, and Analysis of Multivariate Ordinal survey
data with scale usage heterogeneity (as in Rossi et al, JASA (01)).

WWW: http://www.perossi.org/home/bsm-1
2011-03-07 12:04:35 +00:00
Wen Heping
a850098cd5 R-cran-AMORE was born to release the TAO robust neural network algorithm
to the R users. It has grown and I think it can be of interest for
the users wanting to implement their own training algorithms as well as
for those others whose needs lye only in the "user space".

WWW: http://rwiki.sciviews.org/doku.php?id=packages:cran:amore
2011-03-07 10:57:09 +00:00
Wen Heping
ba88c81733 The SciMath project includes packages to support scientific and
mathematical calculations, beyond the capabilities offered by SciPy.
    * enthought.interpolate
    * enthought.mathematics
    * enthought.units

WWW: http://pypi.python.org/pypi/SciMath/

PR:		ports/154351
Submitted by:	Wen Heping (myself)
2011-02-20 03:54:04 +00:00
Wen Heping
90d4a1b864 Veusz is a GUI scientific plotting and graphing package. It
is designed to produce publication-ready Postscript or PDF
output. SVG, EMF and bitmap formats export are also supported.
The program runs under Unix/Linux, Windows or Mac OS X, and
binaries are provided. Data can be read from text, CSV or FITS
files, and data can be manipulated or examined from within the
application.

WWW: http://home.gna.org/veusz/

PR:		ports/153686
Submitted by:	Stas Timokhin <devel@stasyan.com>
2011-01-06 02:39:32 +00:00
Wen Heping
7aaaa71110 Geo::Coordinates::Converter is a simple converter of geo coordinates, the
format and datum of geo coordinates are simply converted. when it is
insufficient in the coordinate system and the format of the standard, it
is possible to add it easily.

WWW:    http://search.cpan.org/dist/Geo-Coordinates-Converter/
2010-12-29 08:50:40 +00:00
Max Brazhnikov
10979612c2 Connect py-biolccc 2010-11-13 21:41:03 +00:00
Sahil Tandon
807ae2afd6 Objects of class Physics::Unit define units of measurement that correspond
to physical quantities.  This module allows you to manipulate these units,
generate new derived units from other units, and convert from one unit
to another.

WWW: http://search.cpan.org/dist/Physics-Unit/

PR:		ports/150245
Submitted by:	Frederic Culot <frederic@culot.org>
2010-09-09 00:26:13 +00:00
Sahil Tandon
a5408a406d epte is a curses-based periodic table of the elements. It provides a
set of examples of the basic sets of constants and procedures needed
to understand the behavior of matter.

WWW: http://www.toddmiller.com/epte/

PR:		ports/150183
Submitted by:	Frederic Culot <frederic@culot.org>
2010-09-08 03:09:31 +00:00
Max Brazhnikov
3ef6616777 Connect kst2 2010-08-23 18:15:03 +00:00
Ashish SHUKLA
7d375bc1fd - Remove the port from 'science' category.
PR:		ports/146513
Approved by:	pgj (mentor)
2010-07-21 09:53:14 +00:00
Ashish SHUKLA
d976a44c9c QElectroTech is a Qt4 application to design electric diagrams. It uses XML
files for elements and diagrams, and includes both a diagram editor and an
element editor.

WWW:	http://qelectrotech.org/

PR:		ports/146513
Submitted by:	Gvozdikov Veniamin <g.veniamin at googlemail.com>
Approved by:	tabthorpe (mentor)
2010-07-21 03:27:25 +00:00
Wen Heping
3bc13a27ce JStrack is written by and for people who are in areas that are
prone to hits from tropical systems (currently only in the Tropical
Atlantic). It's intended to display the NHC/TPC data and give you
what you need to make decisions, etc.. It does NOT, nor will it ever,
attempt to do any forecasting on its own---I leave that to the gurus
at the NHC/TPC.

WWW: http://www.jstrack.org/jstrack/

PR:		ports/148208
Submitted by:	Chris Rees <utisoft@gmail.com>
Feature safe:	yes
2010-06-29 01:22:16 +00:00
Li-Wen Hsu
e4d1bb5df1 Add netcdf3-ftn , netCDF (network Common Data Form), with Fortran
support.

Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net>
2010-05-20 14:21:43 +00:00
Wen Heping
cc8da973ab The massXpert project aims at providing (bio)chemists with a software
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.

PR:		ports/146564
Submitted by:	Gvozdikov Veniamin <g.veniamin@googlemail.com>
2010-05-20 09:43:14 +00:00
Wen Heping
8d3cf83cc4 PyNN(pronounced 'pine') is a simulator-independent language for
building neuronal network models.

WWW: http://neuralensemble.org/trac/PyNN
2010-05-19 05:31:44 +00:00
Wen Heping
d85961f518 - Remove pyNN and re-add as pynn
Reviewed by:	danfe@
2010-05-19 00:14:14 +00:00
Wen Heping
e424150d98 PyNN(pronounced 'pine') is a simulator-independent language for
building neuronal network models.

WWW: http://neuralensemble.org/trac/PyNN

PR:		ports/146664
Submitted by:	Ju Pengfei <jupengfei@gmail.com>
2010-05-18 08:14:12 +00:00
Beat Gaetzi
d717f25f58 Bddsolve is a BDD-based tool for solving satisfiability and reachability
problems.  It uses the BDD package Buddy as a backend.

WWW: http://www.win.tue.nl/~wieger/bddsolve/

Submitted by:	ed@
2010-05-12 13:25:37 +00:00
Martin Wilke
83e3ba00ba Perl modules for molecular chemistry
WWW:	http://search.cpan.org/dist/PerlMol/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
2010-04-02 15:36:26 +00:00
Martin Wilke
a6af1d634f Perl module which parses a SMILES (Simplified Molecular Input Line Entry
Specification) string.

WWW:	http://search.cpan.org/dist/Chemistry-File-SMILES/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
2010-04-02 15:35:47 +00:00
Martin Wilke
e576408592 Perl module implements an object class for representing internal
coordinates and provides methods for converting them to Cartesian
coordinates.

WWW:	http://search.cpan.org/dist/Chemistry-InternalCoords/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
2010-04-02 15:35:23 +00:00
Martin Wilke
4af115e4ea Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification)
string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.

WWW:	http://search.cpan.org/dist/Chemistry-File-SMARTS/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
2010-04-02 15:34:39 +00:00
Martin Wilke
4eb372dfc7 Perl module which generates a three-dimensional molecular structure from a
connection table, such as that obtained by a 2D representation of the
molecule or from a SMILES string.

WWW:	http://search.cpan.org/dist/Chemistry-3DBuilder/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net
2010-04-02 15:33:52 +00:00
Martin Wilke
7edfd85264 SLN linear notation parser/writer
WWW:	http://search.cpan.org/dist/Chemistry-File-SLN/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
2010-04-02 15:33:24 +00:00
Martin Wilke
4deddb544f Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification)
string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.

WWW:	http://search.cpan.org/dist/Chemistry-File-SMARTS/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
2010-04-02 15:32:52 +00:00
Martin Wilke
31412b24c1 MOPAC 6 input file reader/writer
WWW:	http://search.cpan.org/dist/Chemistry-File-Mopac/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
2010-04-02 15:32:24 +00:00