Commit graph

1535 commits

Author SHA1 Message Date
Frederic Culot
6c94ec10d3 - Update to 1.2
- Add LICENSE (Artistic 1 & GPL 1)
- Add TEST_DEPENDS

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
2012-04-16 13:06:04 +00:00
Wen Heping
6058b2661d - Update to 0.47 2012-04-11 01:34:57 +00:00
Wen Heping
347254b1e5 - Update to 1.0
- Reset maintainer to perl@

Feature safe:	yes
2012-03-22 11:08:28 +00:00
Philip M. Gollucci
b59621d3ae - Revert ports/165605 as requested by portmgr@
Note: devel/p5-B-Size and devel/p5-Devel-Arena
where intentionally not restored.

PR:             ports/165605
Approved by:    portmgr (bapt)
Feature safe:   yes (I sure hope so)
2012-03-13 16:15:36 +00:00
Philip M. Gollucci
2cf4c1e2c8 - Remove ports that only work with < perl 5.12 (devel/p5-B-Size, devel/p5-Devel-Arena)
- Remove conditionals for PERL_LEVEL < 501200
- Remove regression-test targets b/c this will be centralized in Mk/bsd.perl.mk
- Other minor cleanups
  RUN_DEPENDS = ${BUILD_DEPENDS} -> RUN_DEPENDS:= ${BUILD_DEPENDS}

PR:             ports/165605
Submitted by:   pgollucci (myself)
Approved by:    portmgr (linimon)
Exp Run by:     linimon
Tested by:      make index
2012-03-08 18:45:38 +00:00
Wen Heping
c01d2361ab - Update to 1.59
PR:		ports/165582
Submitted by:	wen@ (myself)
Approved by:	Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer, via email)
2012-03-06 06:40:50 +00:00
Wen Heping
6571b7f059 - Update to 0.46 2012-03-05 08:22:46 +00:00
Wen Heping
f052f825e0 - Update to 0.4.5 2012-02-23 13:43:25 +00:00
Martin Wilke
b34594ac8a - Update MASTER_SITES and WWW: line
- Add LICENSE
- Support PLIST_FILES

PR:		164985
Submitted by:	Ports Fury
2012-02-19 23:24:52 +00:00
Maho Nakata
a8d4c9422e update to 1.5.0.1. 2012-02-16 02:30:10 +00:00
Sunpoet Po-Chuan Hsieh
69210a7789 - Update to 0.78
- Sort TEST_DEPENDS, MAN1, MAN3 and PLIST

Changes:	http://search.cpan.org/dist/Bio-NEXUS/doc/changes.txt
2012-02-11 02:04:41 +00:00
Sunpoet Po-Chuan Hsieh
c9472c880f - Update to 2.26
Changes:	http://search.cpan.org/dist/Bio-Graphics/Changes
2012-02-11 02:04:24 +00:00
Sunpoet Po-Chuan Hsieh
9bf25c17ed - Update to 1.22
Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
2012-02-09 03:28:51 +00:00
Wen Heping
58000f342c - Update to 0.77 2012-02-09 01:23:59 +00:00
Dirk Meyer
939e416233 - fix build with gcc46 2012-02-07 05:36:27 +00:00
Pav Lucistnik
b63d0c6830 - Mark BROKEN on FreeBSD 9.X and up: does not compile
gcc: AdFrameworkFunctions.m: Objective-C compiler not installed on this system

Reported by:	pointyhat
2012-02-05 22:40:04 +00:00
Martin Wilke
fd3d7b435b - Respect CC
PR:		163172
Submitted by:	Jan Beich <jbeich@tormail.net>
Approved by:	maintainer timeout
2012-01-27 17:41:00 +00:00
Eitan Adler
c59a3834c4 At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:	portmgr
2012-01-21 17:40:15 +00:00
Sylvio Cesar Teixeira
aad73e57ae - Update to 3.23 2012-01-17 00:51:39 +00:00
Alex Dupre
1b91e235c3 Chase pdflib.so version and bump PORTREVISION accordingly. 2012-01-10 11:41:37 +00:00
Thomas Abthorpe
e0ac1afbf4 - The proper acronym for Apache Software License 2 is really AL2
- Thanks to crees@ for generating the initial patch

PR:		ports/163521
Submitted by:	Pedro Giffuni <pfg apache.org>
Hat:		portmgr
Exp run by:	pav
2012-01-09 15:41:08 +00:00
Wen Heping
9b0bddd84f - Update to 0.87 2011-12-23 08:05:00 +00:00
Sunpoet Po-Chuan Hsieh
80aec0046e - Update to 1.21
Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
Feature safe:	yes
2011-11-23 17:40:48 +00:00
Pietro Cerutti
c56e966dc9 - unbreak
Feature safe:	yes
2011-11-17 13:22:29 +00:00
Mark Linimon
2e14f19ca3 Does not build on powerpc-9: error in pthreads.
Hat:		portmgr
Feature safe:	yes
2011-11-10 14:30:51 +00:00
Martin Wilke
e1c6649edf - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
Pav Lucistnik
7bd53bb5b7 - Mark BROKEN: does not compile with new fltk
Reported by:	pointyhat
2011-11-04 22:19:36 +00:00
Pav Lucistnik
a1e47d45d2 - Fix fetch and update WWW 2011-11-04 20:39:12 +00:00
Martin Wilke
bc14c0ad9e - Fix build on FreeBSD 10 2011-10-29 11:10:22 +00:00
Sunpoet Po-Chuan Hsieh
453389fd26 - Update to 0.45 2011-10-29 06:20:45 +00:00
Doug Barton
989772c9ac The vast majority of pkg-descr files had the following format when they
had both lines:

Author: ...
WWW: ....

So standardize on that, and move them to the end of the file when necessary.

Also fix some more whitespace, and remove more "signature tags" of varying
forms, like -- name, etc.

s/AUTHOR/Author/

A few other various formatting issues
2011-10-24 09:11:38 +00:00
Eitan Adler
7e3b32fff8 - remove maintainer tags from pkg-descr
Approved by:	portmgr
Approved by:	bapt (mentor)
2011-10-22 23:50:23 +00:00
Sunpoet Po-Chuan Hsieh
80331d2a02 - Update to 0.43 2011-10-17 01:38:22 +00:00
Wen Heping
1ec5b32963 - Update to 0.44 2011-10-13 06:27:34 +00:00
Pav Lucistnik
13b0de982b - ${FFLAGS} might contain commas
Reported by:	pointyhat
2011-10-10 20:17:22 +00:00
Wen Heping
de399c166e - Update to 0.7
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.7/Changes
2011-10-10 02:33:51 +00:00
Frederic Culot
a288d48de7 - Fix LICENSE (Artistic 1 instead of Artistic 2)
- Pet portlint(1)

PR:		ports/161336
Submitted by:	Simon Olofsson <simon@olofsson.de>
2011-10-07 11:22:46 +00:00
Sunpoet Po-Chuan Hsieh
633fcd8a82 - Update to 2.25
- Sort MAN3 and PLIST
- Pet portlint

Changes:	http://search.cpan.org/dist/Bio-Graphics/Changes
2011-10-02 17:03:33 +00:00
Steve Wills
3f7512cd24 - Add build depends to silence build warnings 2011-09-25 00:07:08 +00:00
Steve Wills
d00b961fcf - Fix missing DEPENDS to silence build warnings 2011-09-24 20:45:23 +00:00
Dmitry Marakasov
6f6fbe4bdf - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:		157936
Submitted by:	myself
Exp-runs by:	pav
Approved by:	pav
2011-09-23 22:26:39 +00:00
Wen Heping
cb2fc04876 - Update to 0.6
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.6/Changes
2011-09-22 07:34:49 +00:00
Carlo Strub
178dc40a96 Change maintainer address to my FreeBSD address
Approved by:	wen@ (mentor)
2011-09-15 12:33:27 +00:00
Wen Heping
5879d16b61 - Fix MASTER_SITES and WWW: line
- Add LICENSE
- Support CC/CFLAGS properly

PR:		ports/160083
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
2011-08-26 00:24:48 +00:00
Steve Wills
6a945607ef - Add missing BUILD_DEPENDS
PR:		ports/159827
Submitted by:	swills (me)
Approved by:	wen (maintainer)
2011-08-18 01:30:02 +00:00
Koop Mast
0e682dded4 Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
mid 2008.

PR:		ports/159624
Submitted by:	Ruslan Mahmatkhanov <cvs-src@yandex.ru>
2011-08-11 19:20:17 +00:00
Wen Heping
ad07e6148a - Update to 1.5.1 2011-08-11 11:37:18 +00:00
Frederic Culot
02ce43955f - Update to 0.40
- Add LICENSE (Artistic 1 & GPLv1)
2011-08-09 18:26:45 +00:00
Emanuel Haupt
f760c11728 Remove WWW entries from unmaintained ports that return 404 or where the domain
disappeared.
2011-08-02 20:58:23 +00:00
Baptiste Daroussin
a9746993e1 Deprecate port with no more public distfiles 2011-08-02 05:36:33 +00:00
Baptiste Daroussin
2e6cabfa17 Bye bye abandonwares (part 2)
2011-08-01 benchmarks/rawio: Looks like an abandonware, no more public distfiles
2011-08-01 benchmarks/tmetric: Looks like abandonware, no more public distfiles
2011-08-01 biology/L-Breeder: Looks like an abandonware, no more public distfile
2011-08-01 biology/crimap: Looks like an abandonware, no more public distfile
2011-08-01 biology/distribfold: No more upstream, looks like an abandonware
2011-08-01 biology/kinemage: Looks like an abandonware, no more public distfile
2011-08-01 biology/lsysexp: Looks like an abandonware, no more public distfile
2011-08-01 chinese/chm2html: Looks like an abandonware, no more public distfile
2011-08-01 chinese/ntuttf: No more public distfiles available
2011-08-01 chinese/reciteword: Looks like an abandonware, no more public distfile
2011-08-01 chinese/tocps: No more pulic distfiles
2011-08-01 chinese/xttmgr: Looks like an abandonware, no more public distfile
2011-08-01 comms/mserver: Looks like an abandonware, no more public distfiles
2011-08-01 comms/qicosi: Looks like an abandonware, no more public distfile
2011-08-01 comms/sms_client: Looks like an abandonware, no more public distfile
2011-08-01 comms/smstools: Looks like an abandonware, no more public distfile
2011-08-01 converters/siconv: Looks like an abandonware, no more public distfiles
2011-08-01 converters/utf8conv: Looks like an abandonware, no more public distfile
2011-08-01 databases/pgcluster: Looks like an abandonware, no more public distfile
2011-08-01 databases/py-MySQL: Please use databases/py-MySQLdb instead
2011-08-01 databases/py-SQLDict: Looks like an abandonware, no more public distfile
2011-08-01 databases/py-rrdpipe: Looks like an abandonware, no more public distfile
2011-08-01 databases/sybase_ase: no more public distfiles available
2011-08-01 04:29:44 +00:00
Sunpoet Po-Chuan Hsieh
1abb4c4130 - Update to 0.39 2011-08-01 03:11:37 +00:00
Mark Linimon
06e6677793 Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
remove support for them from bsd.java.mk.  As Jikes is not available in Java 1.5
or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports
which used it (only occurences were USE_JIKES=no).  Support for the Blackdown VM
is also removed, as it is not available in Java 1.5 and higher.

Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect
old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5.
While here, replace static values of JAVA_VERSION in files/*.in by
%%JAVA_VERSION%% .

PR:		ports/158969
Submitted by:	rene
Tested on:	pointyhat-west -exp
2011-07-21 05:03:02 +00:00
Sunpoet Po-Chuan Hsieh
44e3305c58 - Update to 0.38
- Sort MAN3 and PLIST
2011-07-16 06:08:34 +00:00
Sunpoet Po-Chuan Hsieh
b0ea119ac6 - Update to 1.20
- Sort RUN_DEPENDS and MAN3

Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
2011-07-13 06:48:25 +00:00
Martin Wilke
231379d81f - kick MD5 2011-07-02 11:33:17 +00:00
Chris Rees
f568ba617f - Use USERS and GROUPS
- Use ${SH} instead of calling script directly

PR:		ports/157575
Submitted by:	Chris Rees (utisoft@gmail.com)
Approved by:	tabthorpe (co-mentor)
2011-06-27 17:50:37 +00:00
Nicola Vitale
c8a6af0499 - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy
(This port doesn't yet support SQLAlchemy 0.7.X)
- Bump PORTREVISION
2011-06-25 07:21:20 +00:00
Max Brazhnikov
17fdc75f81 Switch dependency on povray to povray-meta port.
Remove MD5 sum while I'm here.
2011-06-20 22:32:03 +00:00
Baptiste Daroussin
936e8954f7 Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 17:33:07 +00:00
Baptiste Daroussin
2059327040 Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 10:43:58 +00:00
Wen Heping
3fc502f7c5 - Update to 0.5
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.5/Changes
2011-06-10 08:12:40 +00:00
Julien Laffaye
1ca81797c4 Update to 1.1.04
PR:		ports/157527
Submitted by:	Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
Approved by:	bapt (mentor)
2011-06-09 16:33:21 +00:00
Baptiste Daroussin
17958f49d2 deprecate and set expiration date:
it is an abandonware and it is unmaintain for very long
2011-06-08 16:15:45 +00:00
Wen Heping
f7d6e48421 - Update to 0.4.3 2011-06-02 01:38:55 +00:00
Baptiste Daroussin
866dab5761 - update to 2.24
- add licenses
- changes: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.24/Changes
2011-06-01 20:21:51 +00:00
Wen Heping
5d036cfb8c - Update to 1.57
PR:		ports/156329
Submitted by:	Wen Heping (myself)
Approved by:	maintainer
2011-05-24 09:06:29 +00:00
Maho Nakata
78581892b3 Update to 1.6. Web site has been moved. 2011-05-11 05:55:27 +00:00
Brendan Fabeny
4fd0a4b1c1 Update math/gsl to 1.15, and adjust PORTREVISION
and LIB_DEPENDS of dependent ports
2011-05-09 16:42:27 +00:00
Wen Heping
a6c7fafc81 - Update to 0.4
http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.4/Changes
2011-05-09 06:32:51 +00:00
Maho Nakata
f2febc81ee update to 1.4.1
Notified by: Alvin Oga
2011-05-09 04:36:54 +00:00
Steve Wills
03809fed45 - Update to 2.11
Changes:	http://cpansearch.perl.org/dist/Bio-Das-Lite/Changes
2011-05-08 17:06:15 +00:00
Max Brazhnikov
630ca2285f Bump PORTREVISION after open-mofit update 2011-05-02 12:44:53 +00:00
Max Brazhnikov
642c8ce78f Fix build with open-motif-2.3.3
PR:		ports/154044
Submitted by:	Mikhail Tsatsenko <m.tsatsenko at gmail.com>
Exp-runs by:	pav
2011-05-02 12:41:44 +00:00
Greg Larkin
7a3687325a - Updated WWW: to a working link
- Copied unbranded distfile (dotter.LIN) to LOCAL/glarkin for mirroring to
  MASTER_SITE_LOCAL and prevention of fetch checksum error. [1]

Reported by:	pointyhat (via miwi)
2011-04-22 18:59:11 +00:00
Wen Heping
ac92b12813 Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.
All they do is convert back and forth between low-level Perl data
structures and GFF3 text.

WWW: http://search.cpan.org/dist/Bio-GFF3/
2011-04-22 08:51:24 +00:00
Wen Heping
65d8cb8c00 - Update to 0.4.2 2011-04-13 09:11:20 +00:00
Ade Lovett
fe0d23d638 Update to GNU make 3.82 after numerous -exp runs. 2011-04-11 19:54:35 +00:00
Wen Heping
6edfd6fb2e - Update to 0.36 2011-04-01 08:34:03 +00:00
Martin Wilke
a9481afc8a - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
Wen Heping
50fb69d7fc - Take maintainership 2011-03-14 00:35:45 +00:00
Thomas Abthorpe
531fedaadc - Reassign to the heap
PR:		ports/155507 ports/155508
2011-03-13 06:08:53 +00:00
Wen Heping
34ffacfa25 - Update to 0.35 2011-02-28 01:30:15 +00:00
Martin Wilke
9992960752 - Move over to python2.5 or higher
- While here kick md5
2011-02-24 23:25:54 +00:00
Wen Heping
0f9eae8df3 - Update to 0.8 2011-02-15 01:59:12 +00:00
Frederic Culot
365d4641b4 - Update to 1.12.5
Changes:	http://sourceforge.net/news/?group_id=100316&id=297223
2011-02-11 13:11:45 +00:00
Martin Wilke
9d6770ef98 - Update to 5.1.09
PR:		154359
Submitted by:	Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Feature safe:	yes
2011-01-31 11:45:44 +00:00
Pav Lucistnik
e06433c705 - Unbreak the port; I'm not sure how it could possibly work before
Reported by:	pointyhat
Feature safe:	yes
2011-01-27 17:41:16 +00:00
Pav Lucistnik
c44cd0a5c2 - Change depobj for fasta3 to something that does not change on fasta updates
Reported by:	pointyhat
Feature safe:	yes
2011-01-27 17:26:45 +00:00
Beat Gaetzi
ae9f790ad1 - Update to 36.3.2 to fix distfile fetching on pointyhat
PR:		ports/154267
Submitted by:	Fernan Aguero <fernan AT iib.unsam.edu.ar> (maintainer)
Feature safe:	yes
2011-01-26 20:26:36 +00:00
Pav Lucistnik
a953b88289 - Fix fetch
Reported by:	pointyhat
Feature safe:	yes
2011-01-24 21:17:30 +00:00
Philip M. Gollucci
3f26ca6c43 - Fix pkg-plist, got the wrong version before
Reported by:    pointyhat via pav
2010-12-30 23:08:47 +00:00
Philip M. Gollucci
116ec22ac1 - DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed.
PR:             ports/153292
Submitted by:   myself (pgollucci)
Tested by:      -exp run by pav
Approved by:    portmgr (pav)
2010-12-29 20:04:42 +00:00
Philip M. Gollucci
c58c954676 - Update to 1.4.1
- Remove MD5

PR:             ports/153394
Submitted by:   myself (pgollucci)
Approved by:    mauricio@arareko.net (maintainer)
Sponsored by:   RideCharge Inc. / TaxiMagic
2010-12-27 15:11:50 +00:00
Sunpoet Po-Chuan Hsieh
a32defea5d - Use canonical format for FreeBSD.org MAINTAINER addresses
- Remove obsolete MD5 checksum while I'm here

PR:		ports/152844
Submitted by:	sunpoet (myself)
Approved by:	miwi (with portmgr hat)
2010-12-25 16:55:41 +00:00
Wen Heping
bba5355e92 - Update to 2.18
ChangeLog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.18/Changes
2010-12-23 06:37:08 +00:00
Wen Heping
44a8e2746c - Update to 0.34 2010-12-23 06:33:33 +00:00
Wen Heping
a8874c7021 - Fix fetch
Reported by:	QAT@
2010-12-21 00:12:22 +00:00
Wen Heping
0c58bca1ec - Update to 0.33 2010-12-16 08:19:56 +00:00
Philip M. Gollucci
7823a28b14 - Update to 0.32
With Hat:       perl@
Changes:        http://search.cpan.org/dist/Bio-Phylo/Changes
2010-12-12 21:29:40 +00:00
Philip M. Gollucci
8563ed7899 - fix fetch: wget is not required for fetching
Reported by:    QAT
2010-12-12 08:10:05 +00:00
Ade Lovett
4a8684e352 Sync to new bsd.autotools.mk 2010-12-04 07:34:27 +00:00
Wen Heping
01c6777188 - Update to 0.4.1 2010-12-02 13:42:09 +00:00
Alexey Dokuchaev
d2da4dcb85 Improve port description.
Approved by:	maintainer timeout since December 2009
2010-11-29 08:17:34 +00:00
Philip M. Gollucci
c24f9508d3 - Also remove them from pkg-plist lists not from me that crept in 2010-11-24 06:19:46 +00:00
Wen Heping
fabc490448 - Update to 0.31 2010-11-22 08:50:39 +00:00
Wen Heping
5c243d5c84 - Update to 2.1 2010-11-22 00:15:25 +00:00
Wen Heping
4cfe377eb9 - Update to 0.30
PR:		ports/152205
Submitted by:	Gea-Suan Lin <gslin@gslin.org>
2010-11-17 06:24:38 +00:00
Steven Kreuzer
1783398c20 Fix plist.
Reported by:	QAT
2010-11-16 23:55:41 +00:00
Wen Heping
f77bbf6dfe - Update to 2.15
Changelog: http://search.cpan.org/src/LDS/Bio-Graphics-2.15/Changes

PR:		ports/152189
Submitted by:	Gea-Suan Lin <gslin@gslin.org>
2010-11-16 08:07:27 +00:00
Wen Heping
dbe1b3c46b - Update to 1.5.0 2010-11-10 08:52:26 +00:00
Philippe Audeoud
3ccd369106 - Update to 0.28 2010-11-09 14:15:44 +00:00
Pav Lucistnik
b48012ad65 - Unbreak build: CPP is now part of MAKE_ENV
Reported by:	pointyhat
2010-11-08 15:05:11 +00:00
Wen Heping
aa13d40cda - Update to 2.10
Changelog: http://search.cpan.org/src/RPETTETT/Bio-Das-Lite-2.10/Changes
2010-11-04 06:24:22 +00:00
Rene Ladan
0fe3bfd649 - Unbreak by removing some old and adding some new master sites
- Bump PORTREVISION
PR:		ports/151733
Submitted by:	Chris Petrik [c.petrik.sosa gmail.com]
2010-10-30 23:51:30 +00:00
Wen Heping
a9e02fc8e4 - Update to 0.4.0 2010-10-26 00:34:36 +00:00
Wen Heping
8d82354698 - Update to 0.26
- Reset maintainer to perl@
2010-10-25 10:59:25 +00:00
Wen Heping
67d49aa254 - Update to 0.22 2010-10-22 09:29:44 +00:00
Frederic Culot
02a06c807c Update my MAINTAINER address to culot@FreeBSD.org.
Approved by:	sahil@ (mentor)
2010-10-20 05:53:20 +00:00
Wen Heping
891ffdbfa0 - Update to 2.14
ChangeLog: http://search.cpan.org/src/LDS/Bio-Graphics-2.14/Changes
2010-10-19 10:42:43 +00:00
Ade Lovett
6abd00a86b Punt autoconf267->autoconf268 2010-10-16 11:52:47 +00:00
Wen Heping
34df475911 - Update to 4.2.0 2010-10-08 02:06:53 +00:00
Ade Lovett
7e80cde328 Round one migration of ports from automake{19,110} to automake111 2010-10-05 19:57:56 +00:00
Sunpoet Po-Chuan Hsieh
40d054297f - Add an additional MASTER_SITES
PR:		ports/151112
Submitted by:	gjb (maintainer)
Approved by:	pgollucci (mentor)
2010-10-01 01:06:46 +00:00
Erwin Lansing
ea28b70614 Mark BROKEN: does not fetch. 2010-09-30 08:53:18 +00:00
Wen Heping
025752cd44 - Update to 2.13 2010-09-26 08:32:26 +00:00
Wen Heping
c0d7b4a1e1 - Update to 0.76 2010-09-25 08:14:02 +00:00
Martin Matuska
ddcc0de921 Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,
p5-IO-Compress-Zlib and p5-IO-Compress-Bzip2 modules to p5-IO-Compress.
Explicitly depend on p5-IO-Compress only if PERL_LEVEL < 500903
Bump PORTREVISION
2010-09-21 07:56:43 +00:00
Mark Linimon
033923e0f5 Also broken on sparc64 (and, by implication, ia64).
Hat:		portmgr
2010-09-17 09:17:05 +00:00
Maho Nakata
893f4b14c0 Update to 1.3r1.3913.
Actually the version number is from SVN, and maho@ manually
checked out from SVN.
The source archive is not distributed as tar ball.
2010-09-16 21:48:04 +00:00
Wen Heping
aa10f7a2b8 - Update to 4.1.0 2010-09-16 03:31:29 +00:00
Ade Lovett
8262a7b51d Autotools update. Read ports/UPDATING 20100915 for details.
Approved by:	portmgr (for Mk/bsd.port.mk part)
Tested by:	Multiple -exp runs
2010-09-15 18:35:24 +00:00
Wen Heping
0d034d05fe - Update to 4.4c 2010-09-08 00:16:45 +00:00
Wen Heping
40365a66b5 - Update to 0.75
- Reset maintainer to perl@
2010-09-07 07:15:24 +00:00
Wen Heping
a751729898 - Update to 1.13
PR:		ports/150317
Submitted by:	Frederic Culot <frederic@culot.org>
2010-09-07 07:00:17 +00:00
Bernhard Froehlich
cc72c8c922 - Update MAINTAINER to submitters new mail address
PR:		ports/150274
Submitted by:	Glen Barber <glen dot j dot barber at gmail dot com> (maintainer)
Approved by:	beat (co-mentor, implicit)
2010-09-04 15:32:58 +00:00
Sahil Tandon
4da3929a92 - Update to 2.10.0
- Add LICENSE
- Mark MAKE_JOBS_SAFE
- Eliminate unnecessary patch
- Note new homepage in pkg-descr
- Pass maintainership to submitter

PR:		ports/149827
Submitted by:	C-S <c-s@c-s.li>
2010-08-21 00:28:49 +00:00
Greg Larkin
f657360287 - Update USE_PYTHON in Makefile to reflect upstream Python
dependency version requirement

PR:		ports/149251
Submitted by:	glarkin
Approved by:	wen (via email)
2010-08-18 14:09:34 +00:00
Andrej Zverev
0429d94053 Update to 1.12:
- dependency on MooseX::FollowPBP added
- dependency on Moose::Policy removed

PR:		ports/149612
Submitted by:	Frederic Culot <frederic@culot.org>
2010-08-18 12:05:38 +00:00
Li-Wen Hsu
b3866733aa - Update to 2.1.5
- Pass maintainership to submitter

PR:		ports/149247
Submitted by:	C-S <c-s AT c-s.li>
2010-08-04 06:30:07 +00:00
Baptiste Daroussin
a28a217ede Fix typo in maintainer mail address
Submitted by:	Frederic Culot <frederic _at_ culot.org> (maintainer)
Approved by:	jadawin@ (co-mentor)
2010-08-02 16:06:38 +00:00
Baptiste Daroussin
3cf9a14670 - Update to 1.12.4
- Add libcurl as dependency
- Submitter is now maintainer

PR:		ports/149079
Submitted by:	Frederic Coulot <frederic _at_ coulot.org> (maintainer)
Approved by:	jadawin@ (co-mentor)
2010-08-02 15:09:21 +00:00
Pav Lucistnik
39b767908d - Update the libmap instructions for amd64/8
Submitted by:	Rick van der Zwet <info@rickvanderzwet.nl>
2010-07-29 08:30:24 +00:00
Wen Heping
08ad71435d - Update to 1.54
PR:		ports/148274
Submitted by:	Ju Pengfei <jupengfei@gmail.com>
Approved by:	maintainer
Feature safe:	yes
2010-07-02 02:57:19 +00:00
Wen Heping
bd3021c9eb - Update to 2.11
Feature safe:	yes
2010-06-30 07:41:06 +00:00
Wen Heping
9c661b3e8e - Update to 1.17
Feature safe:	yes
2010-06-30 07:36:25 +00:00
Wen Heping
fd6b71cb08 - Update to 1.16
Feature safe:	yes
2010-06-24 00:24:22 +00:00
Wen Heping
c58b91a232 - Update to 2.04
- Pass maintainership to perl@
Feature safe:	yes
2010-06-22 03:28:49 +00:00
Erwin Lansing
8c6092e5ec BROKEN should not be quoted.
No functional change.
2010-06-13 08:40:06 +00:00
Wen Heping
a6a89abfbe - Update to 1.15 2010-06-12 06:18:36 +00:00
Anton Berezin
914f231c85 Update to 1.10.
Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
2010-06-10 16:56:04 +00:00
Philip M. Gollucci
aaeac0d126 - Update to 1.4.0
- Sort pkg-plist
- seperate NOPORTDOCS and NOPORTEXAMPLES
2010-06-08 00:18:54 +00:00
Dirk Meyer
da5e61df79 LICENSE GPLv2 2010-06-05 19:53:32 +00:00
Dirk Meyer
bad8a42899 LICENSE LGPL21 2010-06-05 06:14:28 +00:00
Wen Heping
e7bd8df79f - Update to 1.4.1 2010-06-01 06:57:30 +00:00
Ade Lovett
8d837132c7 Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. 2010-05-31 02:01:56 +00:00
Sylvio Cesar Teixeira
51df349544 - Update to 3.1.6
PR:		ports/147194
Submitted by:	Glen Barber <glen.j.barber@gmail.com> (maintainer)
2010-05-30 23:46:55 +00:00
Dirk Meyer
ca8e128e62 - drop USE_GNUSTEP_PREFIX 2010-05-30 12:28:39 +00:00
Wen Heping
b77703b9d2 - Update to 4.0.1 2010-05-24 07:19:35 +00:00
Dirk Meyer
cf38b673c9 - fix build for gnustep-base 1.21.0 2010-05-23 20:51:27 +00:00
Wen Heping
a5713553a7 - Update to 1.12.2
- Reset maintainer
2010-05-21 06:19:18 +00:00
Wen Heping
af88609ea3 - Update to 2.09 2010-05-18 08:27:03 +00:00
Wen Heping
744e974fb0 - Update to 2.0.8 2010-05-14 13:05:15 +00:00
Wen Heping
14923d1dc1 - Update to 2.0.7
- Set maintainer to perl@
2010-05-10 02:36:57 +00:00
Sylvio Cesar Teixeira
b5dabfb20d - Update to 3.1.4
PR:		ports/146411
Submitted by:	Glen Barber <glen.j.barber@gmail.com> (maintainer)
2010-05-09 13:59:34 +00:00
Wen Heping
b6ad2f761a - Update to 1.00
- Set maintainer to perl@
2010-05-08 08:35:32 +00:00
Greg Larkin
44b546fe8c - Removed BROKEN because file fetches and checksums correctly
- Added another MASTER_SITES for redundancy

PR:		ports/144733
Submitted by:	Fernan Aguero <fernan.aguero@gmail.com> (maintainer)
2010-04-28 22:37:11 +00:00
Wen Heping
d78cf9ae49 - Update to 2.04 2010-04-20 08:48:47 +00:00
Wen Heping
4834e5f360 - Update to 4.4a
- Update my mail address to FreeBSD
2010-04-20 08:42:04 +00:00
Dirk Meyer
2e236823ab - update to 0.81
- fix build on amd64
2010-04-14 05:01:48 +00:00
Wen Heping
1c40ab037b - Update to 6.2.0
Submitted by:	Wen Heping(myself)
Approved by:	maintainer(via Email)
2010-04-07 01:21:36 +00:00
Wen Heping
cf68531462 - Update to 2.03 2010-04-02 09:06:35 +00:00
Mark Linimon
686a04b74a Mark various ports as broken or ignore on powerpc.
While here, remove remnants of alpha.
2010-04-01 05:16:19 +00:00
Wen Heping
9d69e4497a - Update to 2.02 2010-03-30 01:22:56 +00:00
Wen Heping
6905d4a0d8 - Bump PORTREVISION to chase the update of math/gsl 2010-03-29 01:12:27 +00:00
Dirk Meyer
de78af3ac5 - update to 1.4.1
Reviewed by:	exp8 run on pointyhat
Supported by:	miwi
2010-03-28 06:47:48 +00:00
Wen Heping
4440f60cd8 - Update to 3.1.3
- Pass maintainership to submitter

PR:		ports/144992
Submitted by:	Glen Barber <glen.j.barber@gmail.com>
2010-03-24 06:46:44 +00:00
Pietro Cerutti
c6a2501ef2 - Chase x11-toolkits/fltk update 2010-03-23 21:14:39 +00:00
Sylvio Cesar Teixeira
f1cd5913ef - Update to 3.22
Approved by: 	itetcu (mentor)
2010-03-21 17:18:20 +00:00
Wen Heping
7ac145c021 - Update to 0.3.9 2010-03-19 08:32:48 +00:00
Wen Heping
6f315dae4d - Update to 2.01 2010-03-10 01:35:57 +00:00
Wen Heping
d3c411d05d - Update to 0.21 2010-03-09 07:34:48 +00:00
Wen Heping
22c4a3da76 - Update to 0.18
- Adopt

Feature safe:	yes
2010-03-03 13:44:19 +00:00
Wen Heping
69518f2f86 p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XML
over HTTP primarily for biological-data).

WWW: http://search.cpan.org/dist/Bio-Das-Lite/

Feature safe:	yes
2010-03-01 09:16:25 +00:00
Wen Heping
eeba40ae35 - Update to 0.7
Feature safe:	yes
2010-02-24 01:30:46 +00:00
Philip M. Gollucci
b339872c92 - Reset more ports I don't use anymore 2010-02-10 21:47:48 +00:00
Edwin Groothuis
8658684e4b Update to 3.1.2 2010-02-10 09:47:48 +00:00
Wen Heping
22c4fef9a0 - Update to 2.00 2010-02-10 06:10:33 +00:00
Dirk Meyer
ca9c60461c - update to jpeg-8 2010-02-05 11:46:55 +00:00
Wen Heping
49bdce58bc - Update to 0.99
- Update my mail address to FreeBSD
2010-02-03 08:25:35 +00:00
Martin Wilke
53fc8b212a - Update to 3.1.1
PR:		143437
Submitted by:	Ports Fury
2010-02-02 22:42:47 +00:00
Philip M. Gollucci
bc7c753e14 - use $SUB_FILES to dynamically adjust pkg-message
PR:             ports/142408
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Approved by:    fernan@iib.unsam.edu.ar (maintainer)
2010-01-31 03:42:20 +00:00
Jun Kuriyama
326d89e098 - Remove unneeded dependencies which is in perl-5.8.9 dist
(part 19; last!).

Approved by:	portmgr (itetcu)
2010-01-29 14:52:21 +00:00
Philip M. Gollucci
f6af25aa4a - actually remove old patch
Reported by:	QAT
2010-01-17 00:16:34 +00:00
Philip M. Gollucci
c49b8e0836 - Fix on amd64
PR:             ports/142472
Submitted by:   Edmund Sumbar <esumbar@ualberta.ca>
2010-01-16 17:54:38 +00:00
Jun Kuriyama
cbffb3af9d - Remove unneeded dependencies which is in perl-5.8.9 dist from ports
maintained by (perl|ports|kuriyama)@FreeBSD.org.

- Targets are: Test::Simple, Digest::MD5, Locale-Maketext,
  ExtUtils::MakeMaker, ExtUtils::ParseXS, File::Temp, Getopt::Long,
  Encode, Digest, Pod::Parser, File::Spec.
2010-01-16 14:45:49 +00:00
Philip M. Gollucci
3781ecad36 - SUB_FILES += pkg-message
PR:             ports/142407
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
2010-01-09 23:51:26 +00:00
Wen Heping
d938c73fdc - Update to 1.03
- Update my mail address to FreeBSD
2010-01-09 01:21:21 +00:00
Philip M. Gollucci
8086ac7032 - SBU_FILES += pkg-message
PR:             ports/142409
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
2010-01-08 01:30:20 +00:00
Wen Heping
959567bbb7 - Update to 1.995 2010-01-07 02:27:20 +00:00
Wen Heping
43d8e24a17 - Update to 1.53
PR:		ports/142221
Submitted by:	Wen Heping (myself)
Approved by:	maintainer
2010-01-06 00:29:25 +00:00
Wen Heping
47dea29df8 python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)
reader for python.

WWW:    http://simon.net.nz/articles/python-nexus
2009-12-29 13:39:14 +00:00
Wen Heping
4beee06b6b - Fix fetch error 2009-12-27 03:05:03 +00:00
Wen Heping
a70e97a715 - Update to 0.3.7 2009-12-24 03:14:34 +00:00
Martin Wilke
3cb69b845f - Update to 7.1.11
PR:		141812
Submitted by:	Ports Fury
2009-12-22 11:25:15 +00:00
Wen Heping
ac98d03ccc - Update to 0.3.5 2009-12-21 03:29:55 +00:00
Doug Barton
2fadfa2cfb For ports maintained by ports@FreeBSD.org, remove names and/or
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
2009-12-21 02:19:12 +00:00
Wen Heping
46e3211a5d - Update to 1.1.4
Submitted by:	Wen Heping (myself)
Approved by:	maintainer (via Email)
2009-12-18 02:55:57 +00:00
Wen Heping
eb83a3ad9d - Update to 1.4
- Update my mail address to FreeBSD
2009-12-17 06:51:53 +00:00
Wen Heping
e514f1a729 - Update to 0.3.4 2009-12-16 12:48:04 +00:00
Philip M. Gollucci
89c63fe984 - Turn over a bunch of p5- ports that change infrequently to perl@
so more people can look at them.
2009-12-13 18:07:49 +00:00
Wen Heping
d64a5ae397 - Update to 1.994 2009-12-11 08:02:53 +00:00
Wen Heping
5a07a83836 - Update to 0.3.3 2009-12-06 08:47:36 +00:00
Wen Heping
ad74a3628a - Update to 1.993 2009-12-04 11:53:48 +00:00
Wen Heping
e2b9177a1b - Update to 1.6.1
Approved by:	maintainer (via Email)
2009-12-04 11:50:10 +00:00
Max Brazhnikov
7cb3294da7 Chase math/gsl update,
bump PORTREVISION
2009-12-01 20:33:45 +00:00
Wen Heping
564d9e9ea8 - Update to 2.0.12
- Update my mail address to FreeBSD
2009-11-29 01:16:36 +00:00
Sylvio Cesar Teixeira
ba072d1713 - Update my mail address to FreeBSD
Approved by:	miwi (mentor)
2009-11-27 22:52:30 +00:00
Pav Lucistnik
38eb8c5339 - Mark MAKE_JOBS_UNSAFE
Reported by:	pointyhat
2009-11-20 22:53:09 +00:00
Wen Heping
40efa7ff9b - Update to 1.992
- Update my mail address to FreeBSD
2009-11-20 05:10:17 +00:00
Martin Wilke
0625d15cec - broken checksum mismatch 2009-11-19 12:43:06 +00:00
Pav Lucistnik
ed9c0642a6 - Mark MAKE_JOBS_UNSAFE
Reported by:	pointyhat
2009-11-18 22:39:55 +00:00
Wen Heping
695ed5163e pyfasta is a python module for fast, memory-efficient, pythonic
access to fasta sequence files.

WWW:    http://bitbucket.org/brentp/biostuff/src/
2009-11-18 05:53:17 +00:00
Wen Heping
fad82e7fd4 - Update to 21.1.1 2009-11-18 05:33:10 +00:00
Dmitry Marakasov
8dbd1070da Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).

Citation:

Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)

WWW: http://www.ebi.ac.uk/~zerbino/velvet/

PR:		140147
Submitted by:	Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
2009-11-07 01:23:59 +00:00
Pav Lucistnik
975c364f32 - Annotate that 8.x no longer needs libmap hack
Reported by:	rene
2009-10-01 07:34:28 +00:00
Wen Heping
9c55d004d3 - Update to 4.0.0
- Update my mail address to FreeBSD

PR:		ports/137652
Submitted by:	wenheping@gmail.com(myself)
Approved by:	miwi(mentor)
Feature safe:	yes
2009-09-23 01:06:29 +00:00
Jason Evans
97df6db5cb Update to Crux 1.2.0.
Feature safe:	yes
2009-09-19 17:58:13 +00:00
Renato Botelho
3905d8ced0 UNBREAK: Probably was a temporary failure, checksums are ok now.
Feature safe:	yes
2009-09-16 15:57:18 +00:00
Martin Wilke
d583c2c02f -Update to 3.69
PR:		138813
Submitted by:	Ports Fury
Feature safe:	yes
2009-09-16 14:27:00 +00:00
Gerald Pfeifer
27ab5137ce Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
implies lang/gcc44 up from lang/gcc43.

Approved by:	portmgr
2009-09-13 00:08:01 +00:00
Philippe Audeoud
64f2f2465b - Update to 1.14 2009-09-08 12:08:12 +00:00
Martin Wilke
2f12ae5444 - Update to 138038
PR:		138038
Submitted by:	Wen Heping <wenheping@gmail.com>
Approved by:	maintainer
2009-09-04 20:41:25 +00:00
Martin Wilke
4e4a5fc43b - Update to 0.982
PR:		138264
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
2009-08-28 23:36:45 +00:00
Martin Wilke
ab94a3bda7 Bio::SCF module allows you to read and update (in a restricted
way) SCF chromatographic sequence files. It is an interface to
Roger Staden's io-lib. See the installation directions for further
instructions.

WWW:	http://search.cpan.org/dist/Bio-SCF/

PR:		ports/138263
Submitted by:	Wen Heping <wenheping at gmail.com>
2009-08-28 23:36:09 +00:00
Martin Wilke
4afd96b25b Io_lib is a library of file reading and writing code to provide a
general purpose trace file (and Experiment File) reading interface.
The programmer simply calls the (eg) read_reading to create a "Read"
C structure with the data loaded into memory. It has been compiled
and tested on a variety of unix systems, MacOS X and MS Windows.

WWW:	http://staden.sourceforge.net/

PR:		ports/138254
Submitted by:	Wen Heping <wenheping at gmail.com>
2009-08-28 23:34:20 +00:00
Marcelo Araujo
7c7ff787ef - Update to 3.21.
- Reset maintainer to submitter.

PR:		ports/138192
Submitted by:	Sylvio Cesar <scjamorim@bsd.com.br>
2009-08-28 14:52:05 +00:00
Martin Wilke
15df496943 - Update to 1.12
PR:		138230
Submitted by:	Wen Heping <wenheping@gmail.com>
2009-08-27 20:34:58 +00:00
Max Brazhnikov
677abde4b7 Update to 35.4.9
PR:		ports/137991
Submitted by:	Fernan Aguero (maintainer)
2009-08-23 15:47:37 +00:00
Martin Wilke
cb1a940d17 Bio::NEXUS package provides an object-oriented, Perl-based
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on.  This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).

WWW: http://search.cpan.org/dist/Bio-NEXUS/

PR:		ports/137983
Submitted by:	Wen Heping <wenheping at gmail.com>
2009-08-22 20:39:51 +00:00
Martin Wilke
17b7bfd60c - BROKEN checksum mismatch 2009-08-22 08:45:12 +00:00
Dmitry Marakasov
c926af277e - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
Martin Wilke
a3c70c3529 - Fix fetch
PR:		137840
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
2009-08-17 15:38:37 +00:00
Martin Wilke
654825e7a9 - Update MASTER_SITES
PR:		137750
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
2009-08-14 08:33:22 +00:00
Martin Wilke
a69f9725b4 - Update to 4.3
PR:		137625
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
2009-08-13 17:00:04 +00:00
Erwin Lansing
9f3d7499d2 Fix PKGORIGIN
Submitted by:	pointyhat
2009-08-08 13:26:13 +00:00
Pav Lucistnik
4b4b7f19aa - Relax check on bioperl version; people keep forgetting to update this check
when updating bioperl port

Reported by:	pointyhat
2009-08-02 20:00:08 +00:00
Pav Lucistnik
55f1f70c83 - Unbreak fetch
Submitted by:	maintainer
2009-08-02 19:59:03 +00:00
Jeremy Messenger
789d75c728 -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
-Update libtool and libltdl to 2.2.6a.
-Remove devel/libtool15 and devel/libltdl15.
-Fix ports build with libtool22/libltdl22.
-Bump ports that depend on libltdl22 due to shared library version change.
-Explain what to do update in the UPDATING.

It has been tested with GNOME2, XFCE4, KDE3, KDE4 and other many wm/desktop
and applications in the runtime.

With help:	marcus and kwm
Pointyhat-exp:	a few times by pav
Tested by:	pgollucci, "Romain Tartière" <romain@blogreen.org>, and
		a few MarcusCom CVS users. Also, I might have missed a few.
Repocopy by:	marcus
Approved by:	portmgr
2009-08-02 19:36:34 +00:00
Dirk Meyer
eca78ec61b - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated
Requested by:	edwin
2009-07-31 13:57:52 +00:00