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Author SHA1 Message Date
Jan Beich
e4b4177bbc Don't try to look for PLIST under .OBJDIR 
If MAKEOBJDIRPREFIX and WRKDIRPREFIX are same PLIST may point to a
non-existing file under .OBJDIR without breaking build.

$ export MAKEOBJDIRPREFIX=/tmp
$ echo WRKDIRPREFIX=/tmp >>${__MAKE_CONF-/etc/make.conf}
$ cd /usr/ports/print/harfbuzz-icu
$ make clean patch
$ make -V .OBJDIR
/tmp/usr/ports/print/harfbuzz-icu
$ make install
$ pkg info -l harfbuzz-icu
harfbuzz-icu-1.5.1_2:

PR:		219008
Submitted by:	Ilia Skalozubov (based on)
Approved by:	portmgr blanket
 2017-11-02 04:07:23 +00:00
Jimmy Olgeni
258b5d44ad Fix whitespace issues (mixed tab/spaces, alignment) in a few ports. 2017-10-31 14:51:53 +00:00
Mikhail Pchelin
edaca3e20a - update from 0.3 to 0.4 
Approved by:	jpaetzel (mentor)
 2017-10-30 14:57:16 +00:00
Mikhail Pchelin
bb2501bc05 - update from 1.1.0 to 1.3.0 
Approved by:	jpaetzel (mentor)
 2017-10-30 14:45:19 +00:00
Mikhail Pchelin
7e76c3431b - update from 2.2 to 2.3 
Approved by:	jpaetzel (mentor)
 2017-10-30 14:20:02 +00:00
Mathieu Arnold
4b19de29ad Fix options usage. 
You cannot set a variable after any include and use it in options, as
options is one of the few things that are done very very early.

PR:		223071
Reported by:	antoine
Sponsored by:	Absolight
 2017-10-27 12:19:20 +00:00
Sunpoet Po-Chuan Hsieh
b7e862cc15 Update to 4.5.0 
- Pet portlint: reorder LICENSE knobs

Changes:	https://github.com/Unidata/netcdf-c/releases
 2017-10-21 20:18:16 +00:00
Boris Samorodov
93210d6be3 science/pulseview: Update to version 0.4.0, switch to QT5. 2017-10-11 21:50:30 +00:00
Boris Samorodov
f7b23caa3a science/sigrok-cli: Update to version 0.7.0. 2017-10-11 21:48:56 +00:00
Boris Samorodov
b8a6fac2dd science/sigrok-firmware-fx2laf: Update to version 0.1.5. 2017-10-11 21:48:08 +00:00
Mark Linimon
3ef3461740 For ports that are explicitly enabled on armv6, also enable them 
on armv7.  This has not been tested with an -exp run but should
"do no harm".

PR:		221894 (partial)
 2017-10-10 21:31:30 +00:00
Luca Pizzamiglio
9bae30a179 science/py-scikit-fuzzy: Update to 0.3.1 
PR:		222843
Submitted by:	yuri@rawbw.com (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12626
 2017-10-09 13:32:58 +00:00
Sunpoet Po-Chuan Hsieh
a82f8de64e Convert PORTDATA=* and PORTDOCS=* to PLIST entries 2017-10-08 13:49:43 +00:00
Sunpoet Po-Chuan Hsieh
0f60816dd9 Convert PORTDATA=* to PLIST entries 2017-10-08 13:49:38 +00:00
Sunpoet Po-Chuan Hsieh
1fe44bd370 Update to 1.3.5 
Changes:	https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog
		https://github.com/Try2Code/cdo-bindings/commits/master
 2017-10-03 15:35:02 +00:00
Jan Beich
95e5ce00a0 science/gnudatalanguage: unbreak with gcc6 on 10.* 
src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o: In function `GDLInterpreter::l_decinc_dot_expr(ProgNode*, int)':
GDLInterpreter.cpp:(.text+0x4c24): undefined reference to `operator delete(void*, unsigned int)'
GDLInterpreter.cpp:(.text+0x4f51): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o: In function `GDLInterpreter::l_arrayexpr_mfcall_as_arrayexpr(ProgNode*, BaseGDL*)':
GDLInterpreter.cpp:(.text+0x51e9): undefined reference to `operator delete(void*, unsigned int)'
GDLInterpreter.cpp:(.text+0x5442): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o: In function `GDLInterpreter::l_arrayexpr_mfcall(ProgNode*, BaseGDL*)':
GDLInterpreter.cpp:(.text+0x5ab2): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/GDLInterpreter.cpp.o:GDLInterpreter.cpp:(.text._ZN5antlr15CharInputBufferD0Ev[_ZN5antlr15CharInputBufferD5Ev]+0x5d): more undefined references to `operator delete(void*, unsigned int)' follow
src/CMakeFiles/gdl.dir/basic_fun.cpp.o: In function `ForInfoListT<ForLoopInfoT, 32ull>::resize(unsigned long long)':
basic_fun.cpp:(.text._ZN12ForInfoListTI12ForLoopInfoTLy32EE6resizeEy[_ZN12ForInfoListTI12ForLoopInfoTLy32EE6resizeEy]+0x17e): undefined reference to `operator delete[](void*, unsigned int)'
src/CMakeFiles/gdl.dir/dcommon.cpp.o: In function `DCommon::~DCommon()':
dcommon.cpp:(.text+0xf5): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/dcommon.cpp.o: In function `DCommon::~DCommon()':
dcommon.cpp:(.text+0x154): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/dcommon.cpp.o: In function `DCommonRef::~DCommonRef()':
dcommon.cpp:(.text+0x3fd): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/dcommon.cpp.o: In function `DCommon::AddVar(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)':
dcommon.cpp:(.text+0x482): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/dcompiler.cpp.o: In function `DCompiler::ForwardFunction(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)':
dcompiler.cpp:(.text+0x226): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/dcompiler.cpp.o:dcompiler.cpp:(.text+0x314): more undefined references to `operator delete(void*, unsigned int)' follow
src/CMakeFiles/gdl.dir/envt.cpp.o: In function `ForInfoListT<ForLoopInfoT, 32ull>::~ForInfoListT()':
envt.cpp:(.text._ZN12ForInfoListTI12ForLoopInfoTLy32EED2Ev[_ZN12ForInfoListTI12ForLoopInfoTLy32EED5Ev]+0x76): undefined reference to `operator delete[](void*, unsigned int)'
src/CMakeFiles/gdl.dir/envt.cpp.o: In function `EnvUDT::~EnvUDT()':
envt.cpp:(.text._ZN6EnvUDTD2Ev[_ZN6EnvUDTD5Ev]+0xca): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/extrat.cpp.o: In function `ExtraT::ResolveExtra(EnvBaseT*)':
extrat.cpp:(.text+0x1aaa): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/fmtnode.cpp.o: In function `FMTNode::~FMTNode()':
fmtnode.cpp:(.text+0x44): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/gdlexception.cpp.o: In function `WarnAboutObsoleteRoutine(antlr::ASTRefCount<DNode>, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)':
gdlexception.cpp:(.text+0x1c6f): undefined reference to `operator delete(void*, unsigned int)'
gdlexception.cpp:(.text+0x1eab): undefined reference to `operator delete(void*, unsigned int)'
src/CMakeFiles/gdl.dir/gdlxstream.cpp.o:gdlxstream.cpp:(.text._ZN10GDLXStreamD0Ev[_ZN10GDLXStreamD5Ev]+0x1d): more undefined references to `operator delete(void*, unsigned int)' follow

PR:		219300
Reported by:	pkg-fallout
Submitted by:	rakuco
 2017-09-26 22:32:04 +00:00
Jan Beich
3c2e383c73 devel/google{test,mock}: update to 1.8.0.358 
Changes:	59c795c...f1a87d7
 2017-09-25 00:51:02 +00:00
Jan Beich
98eb11b2f0 devel/boost-*: update to 1.65.1 
Changes:	http://www.boost.org/users/history/version_1_65_1.html
PR:		218835
Approved by:	maintainer timeout (1.65.1: 2 weeks; 1.65.0: 1 month)
Tested by:	jhibbits (on powerpc64, earlier version)
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D11582
 2017-09-25 00:08:16 +00:00
Jan Beich
7e21a6476a devel/boost-*: enable C++11 features 
PR:		218835
Obtained from:	https://github.com/DragonFlyBSD/DeltaPorts/pull/690
Approved by:	maintainer timeout (2 months)
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D11582
 2017-09-25 00:05:05 +00:00
Sunpoet Po-Chuan Hsieh
8d5c94ab9e Update to 1.14.2 
Changes:	https://github.com/pysal/pysal/releases
		https://github.com/pysal/pysal/blob/master/CHANGELOG.txt
 2017-09-24 19:08:07 +00:00
Sunpoet Po-Chuan Hsieh
0482ba8f8d Update LICENSE 2017-09-24 18:49:56 +00:00
Ben Woods
aa69830a67 science/InsightToolkit: Update to 4.12.2 
Changes this release:
  https://public.kitware.com/pipermail/community/2017-September/013607.html
 2017-09-23 12:12:08 +00:00
Mathieu Arnold
3fcd0e41de Remove USES=execinfo. 
PR:		220271
Submitted by:	mat (review), Yasuhiro KIMURA (PR)
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D11488
 2017-09-22 10:48:28 +00:00
Muhammad Moinur Rahman
b434cf9b30 science/py-netCDF4: Update version 1.2.7=>1.2.9 
- Conditional installation of DOCS and EXAMPLES
 2017-09-20 13:19:59 +00:00
Mathieu Arnold
cb41fc6623 Fix license information for portgs that use "the same license as Perl". 
Sponsored by:	Absolight
 2017-09-15 08:58:46 +00:00
Gerald Pfeifer
e59c88cece Bump PORTREVISION for ports depending on the canonical version of GCC 
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
 2017-09-10 20:55:38 +00:00
TAKATSU Tomonari
3d484813f4 - Add new port: science/R-cran-kernlab 
Kernel-based machine learning methods for classification, regression,
  clustering, novelty detection, quantile regression and dimensionality
  reduction. Among other methods 'kernlab' includes Support Vector
  Machines, Spectral Clustering, Kernel PCA, Gaussian Processes and
  a QP solver.

  WWW: https://cran.r-project.org/web/packages/kernlab/
 2017-09-10 07:06:04 +00:00
Sunpoet Po-Chuan Hsieh
be127271c8 Update to 1.3.4 
Changes:	https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog
		https://github.com/Try2Code/cdo-bindings/commits/master
 2017-09-08 21:52:00 +00:00
Sunpoet Po-Chuan Hsieh
7bbab2134c Update to 1.3.4 
Changes:	https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog
		https://github.com/Try2Code/cdo-bindings/commits/master
 2017-09-08 21:51:51 +00:00
Sunpoet Po-Chuan Hsieh
e715eda052 Update to 1.9.0 
Changes:	https://code.zmaw.de/news/380
 2017-09-08 21:51:46 +00:00
TAKATSU Tomonari
818ca32448 - Update to 2.19 2017-08-28 11:50:57 +00:00
Sunpoet Po-Chuan Hsieh
0f4c156275 Update to 1.23.1 
Changes:	https://software.ecmwf.int/wiki/display/GRIB/Latest+news
 2017-08-27 00:36:18 +00:00
Raphael Kubo da Costa
7b8ee6a695 Revert r447879. 
Apparently the build is indeed broken with parallel jobs, even though I wasn't
able to reproduce it in my tests. Checking what's broken would take time and
anyone interested in that should rather try updating the port to 3.6.0.

PR:		219293
Reported by:	John Marino <freebsdml@marino.st>
 2017-08-26 20:55:41 +00:00
Sunpoet Po-Chuan Hsieh
48436eeffc Add LICENSE 2017-08-25 18:21:02 +00:00
Ben Woods
33ae01731d science/InsightToolkit: Update to 4.12.1 
Changes this release:
  http://public.kitware.com/pipermail/community/2017-August/013534.html
 2017-08-24 12:21:14 +00:00
Marcelo Araujo
85c18d7387 Bump PORTREVISION to reflect print/gl2ps changes. 
PR:		ports/218399 (based on)
Submitted by:	emaste
 2017-08-24 09:13:09 +00:00
Frederic Culot
c9ea01daf4 - Update to 0.54 
Changes:	http://search.cpan.org/dist/Physics-Unit/Changes
 2017-08-22 15:11:58 +00:00
David Chisnall
31e0b9f12c Update GNUstep core libraries. 
Update the default Objective-C compiler.

Fix various build failures in GNUstep ports from newer versions of the GNUstep
core libraries and from changes to GNUstep Make.

Update various ports that use GNUstep and bump the portrevision of the ones
that haven't had a new release.
 2017-08-21 13:26:28 +00:00
Sunpoet Po-Chuan Hsieh
fc0629ec64 Pet portlint: move BROKEN_* upward 2017-08-20 12:26:58 +00:00
Raphael Kubo da Costa
82897c67c1 Backport a patch to fix the build with GCC 6. 
Obtained from: https://sourceforge.net/p/gnudatalanguage/bugs/688/#4622

PR:		219300
Approved by:	thierry (maintainer)
 2017-08-16 07:34:22 +00:00
Li-Wen Hsu
e4719b2d4d Ad TensorFlow 1.2.1 
PR:		219609
Submitted by:	Jov <amutu@amutu.com>
 2017-08-15 12:08:02 +00:00
Ben Woods
aee6e12d5e science/gramps: Update to 4.2.6 
Changes this release:
  https://gramps-project.org/introduction-WP/2017/08/gramps-4-2-6-released/
 2017-08-14 11:57:05 +00:00
Raphael Kubo da Costa
603032a36f Drop MAKE_JOBS_UNSAFE. 
Tentatively remove it after testing the port with -j2 and -jLOTS_OF_CORES.

PR:		219293
 2017-08-13 11:20:36 +00:00
Raphael Kubo da Costa
8d6300ed68 Add patch to drop a wrong ';' in an if check. 
In addition to fixing an actual bug, this also fixes the build with GCC 6:

/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp: In member function 'bool massXpert::PropListHolder::removeProp(const QString&)':
/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:216:2: error: this 'if' clause does not guard... [-Werror=misleading-indentation]
  if(m_propList.at(iter)->name() == name);
  ^~
/wrkdirs/usr/ports/science/massxpert/work/massxpert-3.4.0/lib/propListHolder.cpp:217:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
  {

PR:		219293
Approved by:	maintainer timeout (vg, 18 days)
MFH:		2017Q3
 2017-08-13 11:19:52 +00:00
Tobias C. Berner
25bf018f0f - Update The Glorious Glasgow Haskell Compiler to version 8.0.2 
- Simplified port by only suporting GCC, and creating a build.mk file
- Update Pandoc to 1.19.2.1
- Update git-annex to 6.20170520
- Update Darcs to 2.12.5
- Update Gtk2Hs to 0.13.2.2
- Update Agda to 2.5.2

Please note that port revisions for all the Haskell ports without version
changes are bumped.

See the UPDATING file for instructions.

New ports (63):

hs-EdisonAPI                     API for EdisonCore
hs-EdisonCore                    Efficent, purely-functional data structures
hs-ListLike                      Generic support for list-like structures
hs-Only                          Canonical anonymous 1-tuple type
hs-aeson-compat                  Compatibility layer for aeson
hs-attoparsec-iso8601            Parsing of ISO 8601 dates
hs-base-compat                   Compatibility with later versions of base
hs-call-stack                    Support call stacks
hs-clock                         Access to high-resolution clocks and timers
hs-code-page                     Adjusting code pages on Windows
hs-colour                        Data type for colors and transparency
hs-concurrent-output             Ungarble output from several threads
hs-cryptohash-md5                Pure MD5 implementation
hs-cryptohash-sha1               Pure SHA-1 implementation
hs-cryptohash-sha256             Pure SHA-256 implementation
hs-data-endian                   Endian-sensitive data
hs-dbus                          Client for the D-Bus IPC system
hs-disk-free-space               Retrieving information about disk space usage
hs-doctemplates                  Pandoc-style document templates
hs-ed25519                       Ed25519 public-key signature system
hs-fdo-notify                    FreeDesktop.org's Desktop Notifications
hs-fixed                         Signed 15.16 precision fixed point arithmetic
hs-fmlist                        FoldMap lists
hs-foundation                    Custom Prelude
hs-gitrev                        Compile-time git revision info
hs-graphviz                      Binding for the GraphViz library
hs-hackage-security              Tools for securing the Hackage package server
hs-half                          Half-precision floating-point
hs-haskell-lexer                 Fully compliant Haskell 98 lexer
hs-http-api-data                 Converting types to and from HTTP API data
hs-integer-logarithms            Integer logarithms implementation
hs-io-streams                    Easy-to-use primitives for I/O using streams
hs-io-streams-haproxy            HAProxy protocol version 1.5 support
hs-magic                         Binding to the libmagic library
hs-microlens                     Microlens
hs-microlens-th                  Automated generation of lenses
hs-microstache                   Mustache templates
hs-monad-unlift                  Type classes for unlifting monad transformers
hs-monadplus                     Partial maps and filters over MonadPlus
hs-mono-traversable-instances    Extra type classes for mono-traversable
hs-mountpoints                   Listing currently mounted filesystems
hs-newtype-generics              Full replacement of newtype
hs-pretty-show                   Working with derived Show instances
hs-process-extras                Read process input/output as ByteString/Text
hs-psqueues                      Priority Search Queues
hs-readable                      Reading data types from ByteString/Text
hs-refact                        Data type for apply-refact
hs-regex-pcre                    PCRE backend to accompany regex-base
hs-safe-exceptions               Safe, consistent, and easy exception handling
hs-say                           Send messages to handles in a thread-safe way
hs-scanner                       Incremental combinator parser for ByteStrings
hs-skylighting                   Syntax highlighting library binding
hs-terminal-size                 Get terminal window sizes without ncurses
hs-text-short                    Data type for keeping short strings in memory
hs-th-abstraction                Inspecting types via Template Haskell
hs-th-lift                       Derive Template Haskell's Lift class
hs-th-lift-instances             Orphan instances for commonly used types
hs-tls-session-manager           TLS session manager
hs-typed-process                 Launching/interaction with external processes
hs-unexceptionalio               IO without non-error/synchronous exceptions
hs-uri-bytestring                RFC3986 compliant URI parser
hs-uri-bytestring-aeson          Aeson instance for URI.ByteString
hs-wl-pprint-text                Version of wl-pprint to use Text

Updated ports (314):

hs-ALUT                                  2.4.0.0_1        --> 2.4.0.2
hs-Agda                                  2.4.2.3          --> 2.5.2
hs-Agda-stdlib                           0.9_1            --> 0.13
hs-BNFC                                  2.8              --> 2.8.1
hs-Boolean                               0.2.3            --> 0.2.4
hs-DAV                                   1.0.7            --> 1.3.1
hs-DRBG                                  0.5.4            --> 0.5.5
hs-Diff                                  0.3.2            --> 0.3.4
hs-GLURaw                                1.5.0.1          --> 2.0.0.3
hs-GLUT                                  2.7.0.1_1,1      --> 2.7.0.12,1
hs-Glob                                  0.7.5_2          --> 0.8.0
hs-HStringTemplate                       0.8.3            --> 0.8.6
hs-HTTP                                  4000.2.20        --> 4000.3.7
hs-HUnit                                 1.2.5.2_7        --> 1.6.0.0
hs-HaXml                                 1.25.3           --> 1.25.4
hs-HsOpenSSL                             0.11.1.1         --> 0.11.4.9
hs-JuicyPixels                           3.2.6            --> 3.2.8.2
hs-List                                  0.5.2            --> 0.6.0
hs-MemoTrie                              0.6.2_2          --> 0.6.8
hs-MissingH                              1.3.0.1          --> 1.4.0.1
hs-MonadRandom                           0.4              --> 0.5.1
hs-ObjectName                            1.1.0.0          --> 1.1.0.1
hs-OpenAL                                1.7.0.0          --> 1.7.0.4
hs-OpenGL                                2.12.0.1,1       --> 3.0.2.0,1
hs-OpenGLRaw                             2.5.1.0_1        --> 3.2.4.0
hs-QuickCheck                            2.8.1            --> 2.10.0.1
hs-RSA                                   2.1.0.1          --> 2.3.0
hs-ReadArgs                              1.2.2            --> 1.2.3
hs-STMonadTrans                          0.3.3            --> 0.4.3
hs-StateVar                              1.1.0.1          --> 1.1.0.4
hs-TypeCompose                           0.9.10_2         --> 0.9.12
hs-activehs                              0.3.1_12         --> 0.3.2
hs-activehs-base                         0.3.0.2_9        --> 0.3.0.4
hs-adjunctions                           4.2.1            --> 4.3
hs-aeson                                 0.8.0.2          --> 1.2.1.0
hs-aeson-pretty                          0.7.2            --> 0.8.5
hs-alex                                  3.1.4            --> 3.2.1
hs-ansi-terminal                         0.6.2.1          --> 0.6.3.1
hs-asn1-data                             0.7.1_9          --> 0.7.2
hs-asn1-encoding                         0.9.0            --> 0.9.5
hs-asn1-parse                            0.9.1            --> 0.9.4
hs-asn1-types                            0.3.0            --> 0.3.2
hs-async                                 2.0.2            --> 2.1.1.1
hs-atomic-primops                        0.8              --> 0.8.0.4
hs-attoparsec                            0.12.1.6         --> 0.13.1.0
hs-authenticate                          1.3.2.11         --> 1.3.3.2
hs-auto-update                           0.1.2.2          --> 0.1.4
hs-aws                                   0.12.1           --> 0.16
hs-base-orphans                          0.4.4            --> 0.6
hs-basic-prelude                         0.5.0            --> 0.6.1.1
hs-bifunctors                            5                --> 5.4.2
hs-blaze-builder                         0.4.0.1          --> 0.4.0.2
hs-blaze-html                            0.8.1.0          --> 0.9.0.1
hs-blaze-markup                          0.7.0.2          --> 0.8.0.0
hs-brainfuck                             0.1.0.2          --> 0.1.0.3
hs-c2hs                                  0.28.1_1         --> 0.28.2_1
hs-cabal-install                         1.22.6.0         --> 1.24.0.2
hs-cairo                                 0.13.1.0         --> 0.13.3.1
hs-case-insensitive                      1.2.0.4          --> 1.2.0.10
hs-cassava                               0.4.3.1          --> 0.5.0.0
hs-cereal                                0.4.1.1          --> 0.5.4.0
hs-cgi                                   3001.2.2.2,1     --> 3001.3.0.2,1
hs-checkers                              0.4.3            --> 0.4.7
hs-chunked-data                          0.2.0            --> 0.3.0
hs-cipher-aes128                         0.7.0.1          --> 0.7.0.3
hs-classy-prelude                        0.12.1.1         --> 1.2.0.1
hs-classy-prelude-conduit                0.12.0.1         --> 1.2.0
hs-clientsession                         0.9.1.1          --> 0.9.1.2
hs-cmark                                 0.4.0.1          --> 0.5.5.1
hs-cmdargs                               0.10.13          --> 0.10.17
hs-comonad                               4.2.7.2          --> 5.0.1
hs-conduit                               1.2.5            --> 1.2.11
hs-conduit-combinators                   1.0.3            --> 1.1.1
hs-conduit-extra                         1.1.9.1          --> 1.1.16
hs-connection                            0.2.5            --> 0.2.8
hs-constraints                           0.4.1.3          --> 0.9.1
hs-contravariant                         1.3.2            --> 1.4
hs-cookie                                0.4.1.6          --> 0.4.2.1
hs-cpphs                                 1.19             --> 1.20.8
hs-criterion                             1.1.0.0          --> 1.2.1.0
hs-cryptohash                            0.11.6_2         --> 0.11.9
hs-cryptohash-cryptoapi                  0.1.3_2          --> 0.1.4
hs-cryptonite                            0.6              --> 0.24
hs-css-text                              0.1.2.1_2        --> 0.1.2.2
hs-darcs                                 2.10.1           --> 2.12.5
hs-data-default                          0.5.3_7          --> 0.7.1.1
hs-data-default-class                    0.0.1_7          --> 0.1.2.0
hs-data-default-instances-base           0.0.1_7          --> 0.1.0.1
hs-data-lens                             2.10.7           --> 2.11.1
hs-data-lens-template                    2.1.9            --> 2.2
hs-data-pprint                           0.2.4            --> 0.2.4.1
hs-deepseq-generics                      0.1.1.2          --> 0.2.0.0
hs-dia-base                              0.1.1.3          --> 0.1.1.4
hs-directory-tree                        0.12.0_2         --> 0.12.1
hs-distributive                          0.4.4_2          --> 0.5.2
hs-dlist                                 0.7.1.1          --> 0.8.0.3
hs-dlist-instances                       0.1_2            --> 0.1.1.1
hs-dns                                   2.0.0            --> 2.0.10
hs-double-conversion                     2.0.1.0          --> 2.0.2.0
hs-either                                4.4.1            --> 4.4.1.1
hs-ekg                                   0.4.0.8          --> 0.4.0.13
hs-ekg-core                              0.1.1.0          --> 0.1.1.1
hs-ekg-json                              0.1.0.0          --> 0.1.0.5
hs-email-validate                        2.1.3            --> 2.3
hs-enclosed-exceptions                   1.0.1.1          --> 1.0.2
hs-entropy                               0.3.7            --> 0.3.8
hs-equivalence                           0.3.1            --> 0.3.2
hs-errors                                2.0.0            --> 2.2.1
hs-esqueleto                             2.4.1            --> 2.5.3
hs-exceptions                            0.8.0.2          --> 0.8.3
hs-extra                                 1.4.1            --> 1.6
hs-fast-logger                           2.4.1            --> 2.4.10
hs-feed                                  0.3.10.0         --> 0.3.12.0
hs-fgl                                   5.5.2.1          --> 5.5.3.1
hs-file-embed                            0.0.9            --> 0.0.10
hs-filestore                             0.6.1            --> 0.6.3.1
hs-free                                  4.12.1           --> 4.12.4
hs-gconf                                 0.13.0.2         --> 0.13.1.0
hs-generic-deriving                      1.8.0            --> 1.11.2
hs-geniplate-mirror                      0.7.1            --> 0.7.5
hs-ghc-events                            0.4.4.0          --> 0.6.0
hs-gio                                   0.13.1.0         --> 0.13.3.1
hs-git-annex                             5.20150727_1     --> 6.20170520
hs-gitit                                 0.11.1           --> 0.12.2.1
hs-glib                                  0.13.1.1         --> 0.13.4.1
hs-gnuidn                                0.2.1_3          --> 0.2.2
hs-gtk                                   0.13.9           --> 0.14.6
hs-gtk2hs                                0.13,1           --> 0.13.2.2,1
hs-gtk2hs-buildtools                     0.13.0.4_1       --> 0.13.2.2
hs-gtksourceview2                        0.13.1.3         --> 0.13.3.1
hs-haddock                               2.16.1           --> 2.17.5
hs-haddock-api                           2.16.1           --> 2.17.4
hs-haddock-library                       1.2.1            --> 1.4.3
hs-happstack-server                      7.4.4            --> 7.4.6.4
hs-hashable                              1.2.3.3,1        --> 1.2.6.1,1
hs-hashtables                            1.2.0.2          --> 1.2.1.1
hs-haskell-src-exts                      1.16.0.1         --> 1.19.1
hs-hasktags                              0.69.1           --> 0.69.3
hs-hedis                                 0.6.9            --> 0.9.8
hs-heist                                 0.14.1.1         --> 1.0.1.0
hs-hexpat                                0.20.9           --> 0.20.13
hs-highlighting-kate                     0.6              --> 0.6.4
hs-hinotify                              0.3.8.1          --> 0.3.9
hs-hint                                  0.4.2.3          --> 0.7.0
hs-hjsmin                                0.1.5.0          --> 0.2.0.2
hs-hlint                                 1.9.21           --> 2.0.9
hs-hoauth2                               0.4.8            --> 0.5.9
hs-hoogle                                4.2.41           --> 5.0.12
hs-hourglass                             0.2.9            --> 0.2.10
hs-hscolour                              1.23,1           --> 1.24.1,1
hs-hslogger                              1.2.9            --> 1.2.10
hs-hslua                                 0.4.0            --> 0.5.0
hs-hspec                                 2.1.10           --> 2.4.4
hs-hspec-core                            2.1.10           --> 2.4.4
hs-hspec-discover                        2.1.10           --> 2.4.4
hs-hspec-expectations                    0.7.1            --> 0.8.2
hs-html-conduit                          1.2.0            --> 1.2.1.1
hs-http-client                           0.4.20           --> 0.5.7.0
hs-http-client-tls                       0.2.2_2          --> 0.3.5.1
hs-http-conduit                          2.1.8            --> 2.2.3.1
hs-http-reverse-proxy                    0.4.2            --> 0.4.4
hs-http-types                            0.8.6            --> 0.9.1
hs-http2                                 1.0.4            --> 1.6.3
hs-hxt                                   9.3.1.15         --> 9.3.1.16
hs-hxt-regex-xmlschema                   9.2.0.2          --> 9.2.0.3
hs-ieee754                               0.7.6            --> 0.8.0
hs-iproute                               1.5.0            --> 1.7.1
hs-js-jquery                             1.11.3           --> 3.2.1
hs-kan-extensions                        4.2.2            --> 5.0.2
hs-keys                                  3.10.2           --> 3.11
hs-kqueue                                0.1.2.6_2        --> 0.2
hs-language-c                            0.5.0            --> 0.6.1
hs-language-javascript                   0.5.14.2         --> 0.6.0.10
hs-largeword                             1.2.3_2          --> 1.2.5
hs-lens                                  4.12.3           --> 4.15.3
hs-libmpd                                0.9.0.2          --> 0.9.0.6
hs-lifted-async                          0.7.0.1          --> 0.9.3
hs-lifted-base                           0.2.3.6          --> 0.2.3.11
hs-map-syntax                            0.2              --> 0.2.0.2
hs-math-functions                        0.1.5.2_2        --> 0.2.1.0
hs-memory                                0.8              --> 0.14.6
hs-mime-mail                             0.4.9            --> 0.4.13.1
hs-mime-types                            0.1.0.6          --> 0.1.0.7
hs-mmorph                                1.0.4            --> 1.1.0
hs-monad-control                         1.0.0.4          --> 1.0.2.1
hs-monad-logger                          0.3.13.2         --> 0.3.24
hs-monad-par                             0.3.4.7          --> 0.3.4.8
hs-monadcryptorandom                     0.6.1_2          --> 0.7.1
hs-monads-tf                             0.1.0.2_2        --> 0.1.0.3
hs-mono-traversable                      0.9.2.1          --> 1.0.2
hs-mueval                                0.9.1.1.2        --> 0.9.3
hs-murmur-hash                           0.1.0.8          --> 0.1.0.9
hs-mutable-containers                    0.3.2            --> 0.3.3
hs-mwc-random                            0.13.3.2         --> 0.13.6.0
hs-mysql                                 0.1.1.8          --> 0.1.4
hs-network                               2.6.2.1          --> 2.6.3.2
hs-network-info                          0.2.0.7          --> 0.2.0.8
hs-network-multicast                     0.1.0            --> 0.2.0
hs-network-uri                           2.6.0.3          --> 2.6.1.0
hs-nonce                                 1.0.2            --> 1.0.4
hs-oeis                                  0.3.6            --> 0.3.9
hs-optparse-applicative                  0.11.0.2         --> 0.14.0.0
hs-pandoc                                1.15.0.6_1       --> 1.19.2.1
hs-pandoc-citeproc                       0.7.3.1          --> 0.10.5.1
hs-pandoc-types                          1.12.4.5         --> 1.19
hs-pango                                 0.13.1.0         --> 0.13.3.1
hs-parallel                              3.2.0.6          --> 3.2.1.1
hs-parsec                                3.1.9            --> 3.1.11
hs-path-pieces                           0.2.0            --> 0.2.1
hs-pcre-light                            0.4.0.3          --> 0.4.0.4
hs-persistent                            2.2              --> 2.7.0
hs-persistent-sqlite                     2.2              --> 2.6.2
hs-persistent-template                   2.1.3.4          --> 2.5.2
hs-pointed                               4.2.0.2          --> 5
hs-polyparse                             1.11             --> 1.12
hs-prelude-extras                        0.4_2            --> 0.4.0.3
hs-primitive                             0.6              --> 0.6.2.0
hs-probability                           0.2.4.1_2        --> 0.2.5.1
hs-profunctors                           5.1.1            --> 5.2
hs-pureMD5                               2.1.2.1_10       --> 2.1.3
hs-quickcheck-io                         0.1.1_2          --> 0.2.0
hs-reflection                            2                --> 2.1.2
hs-regex-applicative                     0.3.2.1          --> 0.3.3
hs-regex-tdfa                            1.2.0_2          --> 1.2.2
hs-resourcet                             1.1.6            --> 1.1.9
hs-safe                                  0.3.9            --> 0.3.15
hs-sandi                                 0.3.5            --> 0.4.0
hs-scientific                            0.3.3.8          --> 0.3.5.1
hs-semigroupoids                         5.0.0.3          --> 5.2
hs-semigroups                            0.16.2.2         --> 0.18.3
hs-setlocale                             1.0.0.4          --> 1.0.0.5
hs-shake                                 0.15.5           --> 0.15.11
hs-shakespeare                           2.0.5            --> 2.0.13
hs-shelly                                1.6.3.3          --> 1.6.8.3
hs-simple-sendfile                       0.2.21           --> 0.2.25
hs-skein                                 1.0.9.3          --> 1.0.9.4
hs-snap                                  0.14.0.6         --> 1.0.0.1
hs-snap-core                             0.9.7.2          --> 1.0.2.1
hs-snap-server                           0.9.5.1          --> 1.0.2.2
hs-socks                                 0.5.4_2          --> 0.5.5
hs-split                                 0.2.2_7          --> 0.2.3.2
hs-statistics                            0.13.2.3         --> 0.14.0.2
hs-stm                                   2.4.4            --> 2.4.4.1
hs-streaming-commons                     0.1.12.1         --> 0.1.18
hs-svgcairo                              0.13.0.3         --> 0.13.1.1
hs-syb                                   0.5.1            --> 0.7
hs-syb-with-class                        0.6.1.6          --> 0.6.1.7
hs-tagged                                0.8.1            --> 0.8.5
hs-tagsoup                               0.13.3           --> 0.14.1
hs-tar                                   0.4.2.1          --> 0.5.0.3
hs-temporary                             1.2.0.3_2        --> 1.2.1
hs-test-framework-hunit                  0.3.0.1_2        --> 0.3.0.2
hs-test-framework-quickcheck2            0.3.0.3_2        --> 0.3.0.4
hs-texmath                               0.8.3            --> 0.9.4.1
hs-text                                  1.2.1.3          --> 1.2.2.2
hs-threads                               0.5.1.3          --> 0.5.1.4
hs-threadscope                           0.2.7            --> 0.2.8
hs-time-locale-compat                    0.1.1.0          --> 0.1.1.3
hs-timezone-olson                        0.1.7            --> 0.1.8
hs-timezone-series                       0.1.5.1          --> 0.1.8
hs-tls                                   1.3.1            --> 1.3.11
hs-torrent                               10000.0.0        --> 10000.1.1
hs-transformers-compat                   0.4.0.4          --> 0.5.1.4
hs-unix-compat                           0.4.1.4          --> 0.4.3.1
hs-unix-time                             0.3.5            --> 0.3.7
hs-unlambda                              0.1.4.1          --> 0.1.4.2
hs-unordered-containers                  0.2.5.1          --> 0.2.8.0
hs-uri                                   0.1.6.3          --> 0.1.6.4
hs-utf8-string                           1                --> 1.0.1.1
hs-utility-ht                            0.0.10_2         --> 0.0.14_2
hs-uuid                                  1.3.11           --> 1.3.13
hs-uuid-types                            1.0.2            --> 1.0.3
hs-uulib                                 0.9.20           --> 0.9.22
hs-vault                                 0.3.0.4          --> 0.3.0.7
hs-vector                                0.10.12.3        --> 0.12.0.1
hs-vector-binary-instances               0.2.1.0_2        --> 0.2.3.5
hs-vector-instances                      3.3.1            --> 3.4
hs-vector-space                          0.10.2           --> 0.10.4
hs-vector-th-unbox                       0.2.1.2          --> 0.2.1.6
hs-void                                  0.7              --> 0.7.2
hs-vte                                   0.13.0.2         --> 0.13.1.1
hs-wai                                   3.0.3.0          --> 3.2.1.1
hs-wai-app-static                        3.1.1            --> 3.1.6.1
hs-wai-extra                             3.0.10           --> 3.0.20.0
hs-wai-logger                            2.2.4.1          --> 2.3.0
hs-warp                                  3.1.3            --> 3.2.13
hs-warp-tls                              3.1.1            --> 3.2.4
hs-webkit                                0.13.1.3         --> 0.14.2.1
hs-wx                                    0.91.0.0         --> 0.92.3.0
hs-wxc                                   0.91.0.0         --> 0.92.3.0
hs-wxcore                                0.91.0.0         --> 0.92.3.0
hs-wxdirect                              0.91.0.0         --> 0.92.3.0
hs-x509                                  1.6.0            --> 1.6.5
hs-x509-store                            1.6.0            --> 1.6.2
hs-x509-system                           1.6.0            --> 1.6.4
hs-x509-validation                       1.6.0            --> 1.6.5
hs-xml-conduit                           1.3.1            --> 1.5.1
hs-xml-hamlet                            0.4.0.11         --> 0.4.1
hs-xmlhtml                               0.2.3.4          --> 0.2.4
hs-xmobar                                0.24.3           --> 0.24.5
hs-xss-sanitize                          0.3.5.6          --> 0.3.5.7
hs-yaml                                  0.8.13           --> 0.8.23.1
hs-yesod                                 1.4.1.5          --> 1.4.5
hs-yesod-auth                            1.4.6            --> 1.4.17.2
hs-yesod-auth-hashdb                     1.4.2.2          --> 1.6.1
hs-yesod-bin                             1.4.13.3         --> 1.5.2.3
hs-yesod-core                            1.4.13           --> 1.4.35
hs-yesod-form                            1.4.4.1          --> 1.4.12
hs-yesod-persistent                      1.4.0.3          --> 1.4.2
hs-yesod-static                          1.5.0.2          --> 1.5.3
hs-yesod-test                            1.4.3.1          --> 1.5.7
hs-zip-archive                           0.2.3.7          --> 0.3.1.1
hs-zlib                                  0.5.4.2          --> 0.6.1.2
scroll                                   1.20151219       --> 1.20170122

Removed ports (5):

hs-MonadCatchIO-mtl                 Deprecated in favor of exceptions
hs-MonadCatchIO-transformers        Deprecated in favor of exceptions
hs-citeproc-hs                      Replaced by pandoc-citeproc
hs-directory                        Part of the packages shipped with GHC
hs-syb-with-class-instances-text    Upstream is unmaintained

This was created together with pgj@.

Reviewed by:		pgj, 6yearold_gmail.com
Differential Revision:	https://reviews.freebsd.org/D11558
 2017-08-08 17:21:45 +00:00
Wen Heping
011b29b965 - Update to 3.1.0.1 2017-08-08 12:07:25 +00:00
Sunpoet Po-Chuan Hsieh
a6e670c049 Update to 1.072 
- Add NO_ARCH

Changes:	http://search.cpan.org/dist/Chemistry-Elements/Changes
 2017-08-07 18:51:48 +00:00
Jason E. Hale
952489701a Update math/libqalculate to 1.0.0a 
Update math/qalculate to 1.0.0
Bump PORTREVISION on dependent ports (shlib bump in libqalculate)
 2017-08-03 07:13:39 +00:00
Sunpoet Po-Chuan Hsieh
fc5e2095de Update to 1.14.1 
Changes:	https://github.com/pysal/pysal/releases
		https://github.com/pysal/pysal/blob/master/CHANGELOG.txt
		https://github.com/pysal/pysal/commits/dev
 2017-07-30 13:12:17 +00:00
Raphael Kubo da Costa
c6bff79fef Update WWW. 
The massxpert.org domain no longer belongs to the project.
 2017-07-26 17:02:15 +00:00
Wen Heping
2762b94d60 - Update to 1.13 
- Update WWW

PR:		220994
Submitted by:	aehlig@linta.de(maintainer)
 2017-07-26 13:42:00 +00:00
Tobias C. Berner
833d870560 Give maintainership of science/avogadro to kde@ as kalzium is the only consumer. 2017-07-25 13:21:55 +00:00
Pawel Pekala
c971fe3c72 After r446199 libR.so has SONAME and was made visible for 
consumer ports. Register correct dependency by using LIB_DEPENDS
instead of BUILD|RUN_DEPENDS dance.

math/rkward-kde4:
- Add 2 missing files to pkg-plist also

PR:		219776
Submitted by:	myself
Approved by:	maintainers timeouts
 2017-07-24 18:26:39 +00:00
Sunpoet Po-Chuan Hsieh
c7889e1472 Update to 1.0.1 
- Update LICENSE_FILE

Changes:	https://gitlab.dkrz.de/k202009/libaec/blob/master/CHANGELOG.md
 2017-07-22 18:40:37 +00:00
Sunpoet Po-Chuan Hsieh
3f14a5a10f Update to 1.14.0 
Changes:	https://github.com/pysal/pysal/releases
		https://github.com/pysal/pysal/blob/master/CHANGELOG.txt
 2017-07-14 20:09:59 +00:00
TAKATSU Tomonari
c9ac92506f - Add missing dependency 
Reported by:	pkg-fallout
 2017-07-06 03:09:35 +00:00
Richard Gallamore
9495883089 * Updated to 1.7.2 
* New maintainer Jov <amutu@amutu.com>
* Sorted options

Changelog:	https://www.mbdyn.org/userfiles/downloads/CHANGELOG-1.7.txt

PR:		220157
Submitted by:	Jov <amutu@amutu.com> (maintainer), pfg
Reviewed by:	matthew (mentor), matt
Approved by:	matthew (mentor)
Differential Revision:	https://reviews.freebsd.org/D11481
 2017-07-05 15:50:43 +00:00
Sunpoet Po-Chuan Hsieh
6865a11c13 Update to 1.23.0 
Changes:	https://software.ecmwf.int/wiki/display/GRIB/Latest+news
 2017-07-04 08:08:23 +00:00
Tobias C. Berner
5da7ccc1fb Update math/gsl to 2.4 
Exp-Run by:	antoine
PR:		220408
 2017-07-03 20:38:11 +00:00
TAKATSU Tomonari
9548df55c5 - Update to 2.16 2017-07-03 06:01:18 +00:00
Sunpoet Po-Chuan Hsieh
f8b5c00365 Update to 3.4.2 
- Sort USE_PYTHON

Changes:	https://bitbucket.org/levitsky/pyteomics/src/default/CHANGELOG
 2017-07-02 16:10:25 +00:00
Richard Gallamore
717c21d94b * Fix broken symlinks 
PR:		220081
Reported by:	<metaf2xml@users.sourceforge.net>
Reviewed by:	lifanov (mentor)
Approved by:	lifanov (mentor)
Differential Revision:	https://reviews.freebsd.org/D11409
 2017-06-29 19:22:05 +00:00
Sunpoet Po-Chuan Hsieh
cb037d3c98 Update devel/readline to 7.0 patch 3 
- Bump PORTREVISION for shlib change

Changes:	https://cnswww.cns.cwru.edu/php/chet/readline/CHANGES
		https://lists.gnu.org/archive/html/bug-bash/2016-09/msg00107.html
		https://lists.gnu.org/archive/html/bug-readline/2017-01/msg00002.html
Differential Revision:	https://reviews.freebsd.org/D11172
PR:		219947
Exp-run by:	antoine
 2017-06-27 13:46:53 +00:00
Wen Heping
e3489e361a - Update to 3.1.0 2017-06-27 07:04:58 +00:00
TAKATSU Tomonari
844398cd55 - Add new port: science/R-cran-udunits2 
Provides simple bindings to Unidata's udunits library.

  WWW: https://cran.r-project.org/web/packages/udunits2/
 2017-06-27 03:36:03 +00:00
Tobias C. Berner
5e373eaa92 Make ninja opt-out in cmake.mk 
Using ninja instead of make (1) can lead to significant speed ups while building.
Therefore switch from having the ninja generator opt-in to having it opt-out.

Previously cmake-ports that wanted to use ninja could set
    CMAKE_NINJA=yes
now, ports that do not work with ninja can set
    cmake:<existing args>,noninja
Note, that needing this should be an exception and most often points to a broken
cmake of the port.

The ports using cmake were modified
* removed USES=gmake, if ninja is used
* removed MAKE_ARGS, if ninja is used
* added the cmake-argument noninja if necessary

PR:		219629
PR:		213331
Exp-run by:	antoine
Reviewed by:	rakuco
Differential Revision:	https://reviews.freebsd.org/D10748
 2017-06-25 21:07:58 +00:00
Stephen Montgomery-Smith
8aa53dd6fd - Update to 2.11.2. 2017-06-25 18:25:49 +00:00
Richard Gallamore
5a71737e40 * Updated to 2.11 
* New maintainer Jov <amutu@amutu.com>

Changelog:	https://www.csie.ntu.edu.tw/~cjlin/liblinear/log

PR:		220104
Submitted by:	Jov <amutu@amutu.com> (maintainer)
Reviewed by:	matthew (mentor)
Approved by:	matthew (mentor)
Differential Revision:	https://reviews.freebsd.org/D11351
 2017-06-25 16:21:46 +00:00
Richard Gallamore
68fbec18b6 * Updated to 2.2 
Changelog:	http://metaf2xml.sourceforge.net/RelInfo-2.2.txt

PR:		220081
Submitted by:	<metaf2xml@users.sourceforge.net>
Reviewed by:	matthew (mentor)
Approved by:	matthew (mentor)
Differential Revision:	https://reviews.freebsd.org/D11313
 2017-06-25 16:19:05 +00:00
Mark Linimon
983c320ec8 Sort NOT_FOR_ARCHS. While here, clean up some BROKEN usages. 
Approved by:	portmgr (tier-2 blanket)
 2017-06-24 18:36:19 +00:00
Dmitry Marakasov
82e95083d7 - Add LICENSE 
- Switch to options helpers
 2017-06-21 09:01:27 +00:00
Stephen Montgomery-Smith
5ada1c039c - Update to 2.11.1. 2017-06-20 03:31:13 +00:00
Stephen Montgomery-Smith
5ccac07431 - Update to 2.11.0. 2017-06-20 01:49:53 +00:00
Ben Woods
65f49a3ecc science/InsightToolkit: Update to 4.12.0 
Changes this release:
  http://public.kitware.com/pipermail/community/2017-June/013214.html
 2017-06-20 01:20:02 +00:00
Richard Gallamore
459ac1ea70 * Updated to 3.22 
* New maintainer Jov <amutu@amutu.com>

Changelog:	http://www.csie.ntu.edu.tw/~cjlin/libsvm/log

PR:		220102
Submitted by:	Jov <amutu@amutu.com> (maintainer)
Reviewed by:	matthew (mentor)
Approved by:	matthew (mentor)
Differential Revision:	https://reviews.freebsd.org/D11269
 2017-06-19 17:27:24 +00:00
David Naylor
9920d3ae65 qa: add check for NO_ARCH 
If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,

Changes to ports:
 - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
   removed.
 - Ports that have elf(5) payloads have had those files added to
   NO_ARCH_IGNORE.
 - R-cran ports that do not set USES=cran:compiles have NO_ARCH set,

PR:		218976
Reviewed by:	antoine, mat
Approved by:	portmgr
 2017-06-18 18:09:16 +00:00
David Naylor
bb547a6642 science/vmd: various fixes 
- fix spelling of VMD license [1]
 - use USES=tcl,tk instead of direct dependency
 - patch vmd to support (tcl|tk)86
 - fix shebang for tcl [1]
 - fix detection of netcdf
 - add sqlite as a dependency (for dmsplugin) [1]
 - add expact as a dependency (for hoomdplugin)
 - rework configuration:
   - explicitly list required components (CONFIGURE_ARGS)
   - call configure directly (instead of via gmake(1))
   - patch configure to accept TCLLDFLAGS and TKLDFLAGS
   - pass PREFIX as an environment variable instead of using sed(1)
   - patch Make-arch to accept environment TCLLDFLAGS and NETCDFLDFLAGS
 - add support for parallel building (except for building plugins)
 - bump PORTREVISION

PR:		219642
Reported by:	Yuri Victorovich <yuri@rawbw.com>
 2017-06-18 06:03:29 +00:00
Stephen Montgomery-Smith
8d6e6ec28c - Fix compilation error (which presumably comes from a change in header files 
associated with python2).
 2017-06-18 03:17:52 +00:00
Thierry Thomas
f58c64ebdf Upgrade science/hdf5-18 to 1.8.19. 
Changelog at
<https://support.hdfgroup.org/HDF5/doc1.8/ADGuide/Changes.html#1819>.
 2017-06-17 09:48:47 +00:00
Sunpoet Po-Chuan Hsieh
64486268fe Remove CONFLICTS: science/netcdf-ftn and science/netcdf3-ftn have been removed over 3 years 2017-06-11 01:53:49 +00:00
Sunpoet Po-Chuan Hsieh
c389e14fe3 Update to 0.3 
- Fix LICENSE
- Add LICENSE_FILE
- Add missing *_DEPENDS

Changes:	https://github.com/scikit-fuzzy/scikit-fuzzy/releases
PR:		219879
Submitted by:	Yuri Victorovich <yuri@rawbw.com> (maintainer)
 2017-06-09 18:44:37 +00:00
Joseph Mingrone
ca72394d1f science/hypre: Fix build with openmpi 
- specify full path to mpicc/mpicxx when setting CC/CXX
- specify mpi include/lib dirs
- set WRKSRC_SUBDIR instead of WRKSRC
- whitespace changes

Approved by:	pfg (maintainer)
 2017-06-08 19:37:02 +00:00
Antoine Brodin
088a545fd4 Mark BROKEN: fails to build 
[ 13%] Building CXX object CMakeFiles/UnitTests.dir/Orthanc/Core/SQLite/Connection.cpp.o
/usr/bin/c++  -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_HAS_DATE_TIME=1 -DBOOST_HAS_FILESYSTEM_V3=1 -DBOOST_HAS_LOCALE=1 -DBOOST_HAS_REGEX=1 -DORTHANC_ENABLE_BASE64=0 -DORTHANC_ENABLE_LOGGING=0 -DORTHANC_ENABLE_MD5=0 -DORTHANC_SQLITE_STANDALONE=1 -DORTHANC_STANDALONE=1 -DORTHANC_STATIC=0 -DORTHANC_WEBVIEWER_VERSION=\"2.2\" -I/wrkdirs/usr/ports/science/orthanc-webviewer/work/.build/AUTOGENERATED -I/usr/local/include -I/usr/local/include/jsoncpp -I/usr/local/include/gdcm-2.6 -O2 -pipe  -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include -I/usr/local/include -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing  -isystem /usr/local/include -o CMakeFiles/UnitTests.dir/Orthanc/Core/SQLite/Connection.cpp.o -c /wrkdirs/usr/ports/science/orthanc-webviewer/work/OrthancWebViewer-2.2/Orthanc/Core/SQLite/Connection.cpp
/wrkdirs/usr/ports/science/orthanc-webviewer/work/OrthancWebViewer-2.2/Orthanc/Core/SQLite/Connection.cpp:346:23: error: no matching constructor for initialization of 'Orthanc::SQLite::FunctionContext'
      FunctionContext context(rawContext, argc, argv);
                      ^       ~~~~~~~~~~~~~~~~~~~~~~

Reported by:	pkg-fallout
 2017-06-08 19:33:40 +00:00
Joseph Mingrone
16600d0c13 New port, science/hypre: Scalable Linear Solvers and Multigrid Methods 
WWW: http://www.llnl.gov/casc/hypre/

PR:		219709
Submitted by:	pfg (maintainer)
Differential Revision:	https://reviews.freebsd.org/D11048
 2017-06-08 03:22:39 +00:00
Sunpoet Po-Chuan Hsieh
6217a43bac Fix build with SQLite 3.19.2 
Submitted by:	Pavel Volkov <pavelivolkov@gmail.com>
Approved by:	portmgr (blanket)
 2017-06-06 13:51:35 +00:00
TAKATSU Tomonari
f4a1fc3fb7 - Update to 2.15 2017-06-06 08:12:50 +00:00
Sunpoet Po-Chuan Hsieh
99ea265f53 Update to 1.22.0 
Changes:	https://software.ecmwf.int/wiki/display/GRIB/Latest+news
 2017-06-05 14:49:41 +00:00
Tobias C. Berner
0e927c0281 Update to 2.7.0 
PR:		219754
Submitted by:	xmj (maintainer)
 2017-06-03 18:03:40 +00:00
Sunpoet Po-Chuan Hsieh
82c97bec20 Convert to options helper 
- Remove outdated PERL_LEVEL check
 2017-06-02 15:39:33 +00:00
Ben Woods
5a694fe75e science/InsightToolkit: Update to 4.11.1 
Changes this release:
  http://public.kitware.com/pipermail/insight-users/2017-May/054519.html
 2017-06-01 15:29:48 +00:00
Thierry Thomas
e284042434 Remove a clash due to #include filedlg.h to fix the build with Gcc 6. 
PR:		219300
Obtained from:	Gilles Duvert (upstream)
 2017-05-31 20:48:06 +00:00
Sunpoet Po-Chuan Hsieh
8b1d897ff6 Update science/hdf5 to 1.10.1 
- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt
 2017-05-30 02:56:43 +00:00
Mark Linimon
378be05b39 Mark some ports failing on armv6, for errors classified as "linker_error". 
While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
 2017-05-27 22:16:50 +00:00
Sunpoet Po-Chuan Hsieh
4dabf739f6 Fix CONFLICTS_INSTALL 
PR:		219388
Submitted by:	pawel
 2017-05-27 19:42:13 +00:00
Mark Linimon
c52a715800 Mark some ports failing on armv6, for errors classified as "???", 
part 2.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
 2017-05-27 00:20:19 +00:00
Danilo G. Baio
0c2c04b55b science/openbabel: Update to 2.4.1 
Patches removed:
  patch-git_c3abbdda, patch-gcc5-support (Integrated upstream)
  patch-scripts__CMakeLists.txt (Builds without it)

While here, set LICENSE and simplify BUILD_DEPENDS.

Changes: https://github.com/openbabel/openbabel/releases

PR:	219382
Submitted by:	Yuri Victorovich <yuri@rawbw.com>
Approved by:	garga (mentor)
Differential Revision:	https://reviews.freebsd.org/D10837
 2017-05-24 01:43:00 +00:00
Matthew Rezny
b760897dde Revision bump of all ports with USE_GL after consolidation of mesa-libs 
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
 2017-05-23 05:03:14 +00:00
Wen Heping
f97c2fbd18 - Update to 0.9.1 2017-05-23 02:34:02 +00:00
Wen Heping
5954f4ba61 - Update to 1.85.1 2017-05-23 01:38:28 +00:00
Mark Linimon
197f08abf4 Mark some ports failing on power64. In cases where the error message 
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Reported by:	swills
 2017-05-22 22:29:17 +00:00