Commit graph

731 commits

Author SHA1 Message Date
Edwin Groothuis
acd87b4ad8 SHA256ify
Approved by:    krion@
2006-01-22 08:34:46 +00:00
Edwin Groothuis
913a5a5cba Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry
Approved by:    krion@
PR:             ports/88711 (related)
2006-01-22 01:29:46 +00:00
Edwin Groothuis
e8d3c8300f Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry 2006-01-22 00:17:42 +00:00
Alexey Dokuchaev
cbb224e9a3 Utilize EXAMPLESDIR. 2006-01-20 09:56:18 +00:00
Alexey Dokuchaev
a6dbbc0318 - Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoid
unnecessary PORTEPOCH bump)
- Update MASTER_SITES and WWW line, provide backup download site
- Come up with better port description
- Reset maintainer to ports@
- Uphold CXX and CXXFLAGS
- Clean up Makefile slightly
- Don't install yet another copy of GPL and texts in French
- Add SHA256 hash to distinfo
2006-01-19 19:47:59 +00:00
Pav Lucistnik
7dc0abbf54 - Remove expired ports 2006-01-14 21:16:35 +00:00
Pav Lucistnik
52e61d2411 - Update to 2.0.20060101
PR:		ports/91715
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
2006-01-14 19:36:19 +00:00
Pav Lucistnik
5825fa4ce6 - Update to 2005.12.06
PR:		ports/91714
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
2006-01-14 19:34:43 +00:00
Pav Lucistnik
366702a54e - Chase openbabel update 2006-01-14 12:43:12 +00:00
Kris Kennaway
314f18d79c BROKEN: Broken dependency 2006-01-14 09:38:11 +00:00
Sergey Matveychuk
b4d2ac42d7 - Update graphics/libglut to 6.4.1.
- Shared lib version and PORTREVISION bumb for all affected ports.

While I'm here:
- Remove USE_MESA knob where it was (35 ports).
  It marked as depricated for 2 years.

PR:		ports/90247
Submitted by:	Ermal Lu?i <eri--@albabsd.org>
2006-01-12 12:54:32 +00:00
Edwin Groothuis
8a256d14e0 Fix maintainer address
From: Tony Maher <anthony.maher@uts.edu.au>
    To: Edwin Groothuis <edwin@FreeBSD.org>
    Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer addressupdate

    Actually I need  modify all my ports to use OptusNet rather than
    Biolateral.  Is there an easy way to do this or should I submit a
    separate 1-line patch and PR for each port?

    biology/crimap
    biology/dna-qc
    biology/flip
    biology/primer3
    biology/seqio
    biology/wise
    math/xgobi
    net/generic-nqs

Submitted by:	Tony Maher <anthony.maher@uts.edu.au>
2006-01-09 03:25:03 +00:00
Trevor Johnson
f449b89dca Hash with SHA-256. 2006-01-07 20:00:08 +00:00
Pav Lucistnik
3527239417 - Remove symlinks that belong to mtree
Approved by:	maintainers
2006-01-05 22:31:12 +00:00
Edwin Groothuis
4e74668975 possible fix to unbreak biology/L-Breeder
L-Breeder is currently marked unfetchable:
	http://people.freebsd.org/~fenner/portsurvey/biology.html#L-Breeder

	So I tried to investigate the problem and I'm now submitting
	my homework so it doesn't get lost.

	This is what I noticed:

	i) L-Breeder upstream sources have "stagnated for some time,
	but now a new simplified version is available" (sic, from
	the web site)

	So, the fetch issue is resolved. And the pkg-descr is also
	updated to reflect the new home page. However:

	ii) L-Breeder is now called LBreeder. I have changed PORTNAME
	to reflect this, although I don't know if this is the right
	thing to do. Should the port be moved to biology/LBreeder?
	Or perhaps just leaving PORTNAME pointing to the old name
	and then work inside the Makefile to point the build/install
	to the correct name?

	iii) the sources have been reorganized so I have to update
	the port's Makefile to reflect this. The attached patch
	works for me under FreeBSD-4.11 (although it's possible
	that I may have missed a dependency if I already have a
	required library installed in my box. Sorry, I don't have
	a tinderbox-like setup to test builds)

	iv) the program does not have a version number, nor did I
	find one by looking inside the sources. To avoid changing
	too much the port I just left PORTVERSION at 1.0 and bumped
	PORTREVISION to 6

	Finally, do note that I am not a user of LBreeder, so I
	cannot test the program myself. I just noticed that by
	calling the executable I get a black X screen, that I can
	quit by pressing 'q' as documented in Readme.txt, but I
	can't tell myself if this is the expected behaviour. Nor
	do I know how to use the example files. Caveat emptor.

PR:		ports/90073
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:	maintainer timeout
2006-01-02 21:29:30 +00:00
Tim Bishop
b9073575f7 - New upstream version; two patches incorporated.
PR:		90140
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
2005-12-10 14:04:33 +00:00
Emanuel Haupt
f9f998fd02 Update to 1.3.1
PR:		90029
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
2005-12-06 21:23:04 +00:00
Tim Bishop
ef117d6358 - Update to 2005.13.07 to make fetchable again
PR:		89976
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
2005-12-06 15:13:17 +00:00
Tim Bishop
f5b55cca3b - Update to 3.18 to make fetchable again
- Mark broken on 6.x upwards

PR:		89977
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
2005-12-06 15:10:08 +00:00
Marcus Alves Grando
690b4fde8e Update to 0.5.1
Unbroken >= 502126
Add SHA256

PR:		89980
Submitted by:	maintainer
2005-12-06 02:00:55 +00:00
Tim Bishop
ce480365f5 - Fix fetch problems
PR:		89971
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
2005-12-05 16:57:26 +00:00
Edwin Groothuis
b6d6a6eb9e Add conflicts:
CONFLICTS= p5-bioperl-1.[02468]*

Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>, Mauricio Herrera Cuadra <arareko@yahoo.com>
2005-12-04 22:12:48 +00:00
Edwin Groothuis
9c69af1094 Add conflicst:
CONFLICTS=     p5-bioperl-1.[13579]*

Submitted by:	Mauricio Herrera Cuadra <arareko@yahoo.com>,Fernan Aguero <fernan@iib.unsam.edu.ar>
2005-12-04 22:11:44 +00:00
Edwin Groothuis
ede129019c Fix port: biology/p5-bioperl-devel
This patch adds a LATEST_LINK line in the Makefile to avoid
      duplication with the 'p5-bioperl' port in the packages/Latest
      directory.

PR:		ports/89916
Submitted by:	Mauricio Herrera Cuadra <mauricio@arareko.net>
2005-12-04 06:24:05 +00:00
Simon Barner
083e22eece - Re-add p5-bioperl-devel, development version of biology/p5-bioperl
(A collection of Perl modules for bioinformatics)

PR:		ports/89497
Submitted by:	Mauricio Herrera Cuadra <arareko@yahoo.com>
2005-12-02 21:40:12 +00:00
Simon Barner
01d9e8ebe5 - Unbreak by updating to 4.4
- Add dependecy to MESA

PR:		ports/89795
Submitted by:	Johan van Selst <johans@stack.nl>
2005-12-01 14:42:44 +00:00
Bill Fenner
ac94c20eb3 Add the right MASTER_SITE_SUBDIR, so that this port is fetchable from
20 sites instead of just 1.
2005-11-26 03:40:59 +00:00
Pav Lucistnik
4e4ebe662e - Add SHA256 2005-11-24 00:04:00 +00:00
Pav Lucistnik
75d9276aa1 - Drop old povchem.c checksum
- Add SHA256, SIZE
2005-11-24 00:02:29 +00:00
Pav Lucistnik
bc1673d0ae - BROKEN: Size mismatch 2005-11-23 23:59:57 +00:00
Kris Kennaway
8295c21a0e BROKEN: Size mismatch 2005-11-16 04:37:44 +00:00
Ade Lovett
54a0b86543 Mass-conversion to the USE_AUTOTOOLS New World Order. The code present
in bsd.autotools.mk essentially makes this a no-op given that all the
old variables set a USE_AUTOTOOLS_COMPAT variable, which is parsed in
exactly the same way as USE_AUTOTOOLS itself.

Moreover, USE_AUTOTOOLS has already been extensively tested by the GNOME
team -- all GNOME 2.12.x ports use it.

Preliminary documentation can be found at:
	http://people.FreeBSD.org/~ade/autotools.txt

which is in the process of being SGMLized before introduction into the
Porters Handbook.

Light blue touch-paper.  Run.
2005-11-15 06:52:12 +00:00
Renato Botelho
a9178a7bf6 - Mark it as DEPRECATED - master site disapeared
- Set EXPIRATION_DATE

PR:		ports/88003
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	maintainer timeout (17 days)
2005-11-11 14:40:32 +00:00
Renato Botelho
67c234358e - Mark it as DEPRECATED - master site disapeared
- Set EXPIRATION_DATE

PR:		ports/88002
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	maintainer timeout (17 days)
2005-11-11 14:40:25 +00:00
Renato Botelho
8669a508d3 - Mark it as DEPRECATED (mastersite disapeared)
- Set EXPIRATION_DATE

PR:		ports/88000
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	maintainer timeout (16 days)
2005-11-11 14:29:09 +00:00
Mark Linimon
34da9bdf57 With portmgr hat on, reset maintainership of knu's ports since he has
been inactive more than 6 months.  We hope to see him back sometime.
2005-11-11 01:18:01 +00:00
Marcus Alves Grando
23d07b2cdb Update to 1.41
Take MAINTAINER
Add SHA256

PR:		88792
Submitted by:	Mauricio Herrera Cuadra <mauricio@arareko.net>
2005-11-11 01:15:35 +00:00
Marcus Alves Grando
12417fc462 Update to 3.14b
Update MASTER_SITES
Add SHA256
Remove extra TABS

PR:		88007
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	maintainer timeout, 14 days
2005-11-10 01:21:42 +00:00
Kris Kennaway
b1cf59535c Remove expired ports 2005-11-05 09:07:44 +00:00
Joe Marcus Clarke
235c907ae5 Bump PORTREVISION to chase the glib20 shared library update. 2005-11-05 05:22:06 +00:00
Sam Lawrance
94cbb85aef Mark DEPRECATED since upstream is unmaintained and mastersite is gone.
PR:		ports/88004
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	Tony Maher <anthony.maher@uts.edu.au> (maintainer)
2005-10-29 14:09:33 +00:00
Kris Kennaway
585033d00e BROKEN: Unfetchable 2005-10-28 06:38:35 +00:00
Emanuel Haupt
2cb934bb50 Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser for
NCBI Entrez Gene.

PR:		87423
Submitted by:	Mauricio Herrera Cuadra <mauricio@arareko.net>
Approved by:	novel (mentor) (implicit)
2005-10-15 20:09:50 +00:00
Sergey Matveychuk
6c2583cf18 - Update to 20050605
PR:		ports/87266
Submitted by:	maintainer
2005-10-11 22:33:34 +00:00
Sergey Matveychuk
53f6cba83b - Update to 3.13. It fixes fetching.
PR:		ports/87264
Submitted by:	maintainer
2005-10-11 20:44:38 +00:00
Maho Nakata
9f13557fd3 Update to 0.9.8 2005-10-10 09:08:22 +00:00
Trevor Johnson
2ca0f2bd92 Checking MACHINE_ARCH is deprecated. 2005-09-23 16:21:45 +00:00
Herve Quiroz
ab8ee8cdcc Update to version 7
PR:		86196
Submitted by:	Tony Maher <anthony.maher@uts.edu.au>
Approved by:	maintainer
2005-09-20 14:59:28 +00:00
Volker Stolz
a15a746cf2 Don't strip static libraries on installation ;)
(Unbreaks e.g. biology/nclever)
2005-09-14 09:24:04 +00:00
Renato Botelho
4eafa9b940 Add p5-Bio-Das 1.02, client-side library for Distributed Genome
Annotation System.

PR:		ports/76379
Submitted by:	Razi Khaja <razi@genet.sickkids.on.ca>
2005-09-01 13:09:32 +00:00