The mgcv package is one of the recommended packages to be installed with
R. A problem with mgcv and clang/openmp 13 is that mgcv versions prior
to 1.8-37 place 'include <omp.h>' after 'include <R.h>'. This causes a
conflict between '#define match' and an openmp pragma line, which uses
match(). This problem was fixed in mgcv 1.8-37, so replace mgcv 1.8-36
with this newer version.
While here, incorporate formatting changes suggested by portclippy and
portfmt.
PR: 258887
Approved by: dim
Differential Revision: https://reviews.freebsd.org/D32280
I intended to drop maintainership of math/libRmath as I no longer use
it (and suspect there are few users), but accidentally dropped
maintainership of math/R.
src/unix/sys-unix.c uses fpsetmask to workaround a bug that is not present since FreeBSD 4.0.
This issue also affected Firefox and was resolved 9 years ago https://bugzilla.mozilla.org/show_bug.cgi?id=789436#c27
fpsetmask executions cause R build to crash on powerpc64(le), since new SIGFPE kernel code doesn't take into account old workarounds.
PR: 254621
Approved by: jrm (maintainer)
* Fix build on i386 [1]
* Fix science/code_saturne build with new openblas [2]
* Avoid installing private headers [3]
* Prevent build from optimizing for host by correcting build confg [4]
* Bump portrevision of dependent ports [5]
This is correcting issues from r523749 [1][2][4] and r515970 [3]
PR: 231371
Reported by: build cluster [1]
Reported by: Dima Pasechnik <dimpase+freebsd@gmail.com> [2]
Reported by: many [5]
Reviewed by: mat, bapt
Approved by: implicit, since this is a build fix
libomp is provided by
- LLVM, which gets pulled in with FLANG
- gcc
So, we *must* only depend on devel/openmp when
- the OPENMP knob is on
- FLANG is off (guaranteed to be off for all archs except amd64)
- clang is the C compiler.
But, we cannot modify LIB_DEPENDS after CHOSEN_COMPILER_TYPE is defined, so
for now, limit the OPENMP knob for i386 and amd64 where clang is the
default compiler.
This will be moot after 12.1 when openmp will be in base.
PR: 240279
Reported by: pkubaj
Reviewed by: pkubaj
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)
PR: 236907
Approved by: bapt (maintainer)
Differential Revision: https://reviews.freebsd.org/D19767
'CHANGES IN R 3.5.3' from
https://cran.r-project.org/doc/manuals/r-devel/NEWS.html
- writeLines(readLines(fnam), fnam) now works as expected, thanks to Peter
Meissner's PR#17528
- setClassUnion() no longer warns, but uses message() for now, when
encountering "non local" subclasses of class members
- stopifnot(exprs = T) no longer fails
