Commit graph

11438 commits

Author SHA1 Message Date
Stephen Montgomery-Smith
a5ebcc55a5 - Update to 1.0.4. 2017-06-20 03:33:13 +00:00
Stephen Montgomery-Smith
ca40640527 - Update to 2.4.2. 2017-06-20 03:32:22 +00:00
Stephen Montgomery-Smith
4d95151be9 - Update to 1.3.2. 2017-06-20 03:31:51 +00:00
Stephen Montgomery-Smith
0bd6b84112 - Update 1.7.2. 2017-06-20 03:09:02 +00:00
Stephen Montgomery-Smith
8e4809a8dd - Update to 3.0.0. 2017-06-20 01:18:24 +00:00
Stephen Montgomery-Smith
5c2d67fd61 - Update to 1.3.0. 2017-06-20 01:09:59 +00:00
Stephen Montgomery-Smith
0f3392870f - Update to 2.4.0. 2017-06-20 01:04:20 +00:00
Stephen Montgomery-Smith
e5d8d7307b - Update to 2.1.0. 2017-06-20 01:02:10 +00:00
Stephen Montgomery-Smith
06ad959b8d - Update to 1.3.0. 2017-06-20 00:59:26 +00:00
Stephen Montgomery-Smith
81018bf2cf - Take maintainership. 2017-06-19 01:09:20 +00:00
Wen Heping
8b652e9c24 - Update to 2.0.5
PR:		220092
Submitted by:	neel@neelc.org(maintainer)
2017-06-19 00:52:21 +00:00
David Naylor
9920d3ae65 qa: add check for NO_ARCH
If NO_ARCH is set then check that no FreeBSD elf(5) files are in $STAGEDIR.
If an elf(5) file is bundles as part of the package, but is not meant to be
run directly (i.e. the elf(5) file is a payload, and not compiled) then
those files can be added to NO_ARCH_IGNORE to avoid the check from failing,

Changes to ports:
 - Ports that have NO_ARCH set, but actually compile files have had NO_ARCH
   removed.
 - Ports that have elf(5) payloads have had those files added to
   NO_ARCH_IGNORE.
 - R-cran ports that do not set USES=cran:compiles have NO_ARCH set,

PR:		218976
Reviewed by:	antoine, mat
Approved by:	portmgr
2017-06-18 18:09:16 +00:00
Jochen Neumeister
315769291a - math/py-pyhull: Update to 2015.2.0
PR:		220018
Submitted by:	Yuri Victorovich <yuri at rawbw.com> (maintainer)
Approved by:	miwi (mentor)
Differential Revision:	https://reviews.freebsd.org/D11229
2017-06-17 10:42:44 +00:00
Sunpoet Po-Chuan Hsieh
b7fd1d6e3c Add PERL_LEVEL check
- Bump PORTREVISION for dependency change
2017-06-17 10:02:32 +00:00
Sunpoet Po-Chuan Hsieh
6846048075 Add PERL_LEVEL check
- Bump PORTREVISION for dependency change
2017-06-17 10:02:27 +00:00
Sunpoet Po-Chuan Hsieh
27433f4b4a Add PERL_LEVEL check
- Bump PORTREVISION for dependency change
2017-06-17 10:02:23 +00:00
Sunpoet Po-Chuan Hsieh
6ab05fb359 Add PERL_LEVEL check
- Bump PORTREVISION for dependency change
2017-06-17 10:02:18 +00:00
Sunpoet Po-Chuan Hsieh
db05e0713d Update to 0.2613
Changes:	http://search.cpan.org/dist/Math-BigRat/CHANGES
2017-06-17 10:01:12 +00:00
Thierry Thomas
f4547b0bb1 Update math/superlu_mt to version 3.1, along with some cleanups.
PR:		219265
Submitted by:	pfg
2017-06-17 08:34:19 +00:00
Wen Heping
12f4e80ece - Update to 3.0.0
- Take maintainership
2017-06-16 08:46:15 +00:00
Kurt Jaeger
36252c4733 math/eigen3: update 3.2.10 -> 3.3.4
PR:		220019
Reviewed by:	otacilio.neto@bsd.com.br
Approved by:	rakuco (kde)
Relnotes:	http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.4
2017-06-15 22:27:48 +00:00
Thierry Thomas
a357e8b5db Rename the shared libraries correctly.
Reported by:	pfg
2017-06-14 21:10:00 +00:00
Thierry Thomas
b7d6397734 Build and install the shared libraries.
They are needed by pfg@ to port trilinos.
2017-06-14 17:04:45 +00:00
Sunpoet Po-Chuan Hsieh
dd1c5b64b6 Update to 1.13
- Add NO_ARCH

Changes:	http://search.cpan.org/dist/Math-Evol/Changes
2017-06-14 16:10:11 +00:00
Danilo Egea Gondolfo
cffdc8e541 - License changed to Apache License 2.0
while here
- Update to 7.950.1

PR:		219843
Submitted by:	pfg
2017-06-13 17:26:25 +00:00
Dmitry Marakasov
e0060d5373 - Switch to options helpers
- Switch to new test framework
- Cosmetic fixes
2017-06-13 09:01:23 +00:00
Sunpoet Po-Chuan Hsieh
141b4c5246 Use USES=readline:port
Approved by:	portmgr (blanket)
2017-06-12 22:25:39 +00:00
TAKATSU Tomonari
c12da06724 - Update to 1.2.8 2017-06-12 03:55:25 +00:00
Martin Wilke
3abcc19b37 - Update to 0.8.0
PR:		219751
Submitted by:	maintainer
2017-06-11 16:53:31 +00:00
Antoine Brodin
d91418111f Mark BROKEN: fails to link
libtool: link: g++5 -shared -nostdlib /usr/lib/crti.o /usr/local/lib/gcc5/gcc/x86_64-portbld-freebsd10.3/5.4.0/crtbeginS.o  .libs/input_lexer.o .libs/sym2poly.o .libs/gausspol.o .libs/threaded.o .libs/moyal.o .libs/maple.o .libs/ti89.o .libs/mathml.o .libs/misc.o .libs/permu.o .libs/quater.o .libs/desolve.o .libs/input_parser.o .libs/symbolic.o .libs/index.o .libs/modpoly.o .libs/modfactor.o .libs/ezgcd.o .libs/derive.o .libs/solve.o .libs/intg.o .libs/intgab.o .libs/risch.o .libs/lin.o .libs/series.o .libs/subst.o .libs/vecteur.o .libs/sparse.o .libs/csturm.o .libs/tex.o .libs/global.o .libs/ifactor.o .libs/alg_ext.o .libs/gauss.o .libs/isom.o .libs/plot.o .libs/plot3d.o .libs/rpn.o .libs/prog.o .libs/pari.o .libs/cocoa.o .libs/unary.o .libs/usual.o .libs/identificateur.o .libs/gen.o .libs/tinymt32.o .libs/first.o .libs/TmpLESystemSolver.o .libs/TmpFGLM.o .libs/help.o   -L/wrkdirs/usr/ports/math/giacxcas/work/CoCoALib-0.9950/lib -L/wrkdirs/usr/ports/math/giacxcas/work/fltk-1.3.0/lib -L/usr/local/lib -L/usr/local/lib/gcc5 -lcocoa -lpari -lgsl -lgslcblas -lintl -lrt -lpthread -llapack -lblas -lgfortran -lpng -lmpfr -lgmp -L/usr/local/lib/gcc5/gcc/x86_64-portbld-freebsd10.3/5.4.0 -L/usr/local/lib/gcc5/gcc/x86_64-portbld-freebsd10.3/5.4.0/../../../../../x86_64-portbld-freebsd10.3/lib -L/usr/local/lib/gcc5/gcc/x86_64-portbld-freebsd10.3/5.4.0/../../.. -lstdc++ -lm -lssp_nonshared -lc -lgcc_s /usr/local/lib/gcc5/gcc/x86_64-portbld-freebsd10.3/5.4.0/crtendS.o /usr/lib/crtn.o  -fstack-protector -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -B/usr/local/bin -fstack-protector -Wl,-rpath=/usr/local/lib/gcc5   -Wl,-soname -Wl,libgiac.so.0 -o .libs/libgiac.so.0.0.0
/usr/local/bin/ld: PARI_stack_limit: TLS definition in /usr/local/lib/libpari.so section .tbss mismatches non-TLS reference in .libs/pari.o
/usr/local/lib/libpari.so: error adding symbols: Bad value
collect2: error: ld returned 1 exit status

Reported by:	pkg-fallout
2017-06-11 15:25:52 +00:00
Sunpoet Po-Chuan Hsieh
ed6cd78ae0 Update distinfo and unbreak this port
- While I'm here, fix indent

Content of tarballs are unchanged (checked against [1]).

=> Math_Combinatorics-1.0.0.tgz doesn't seem to exist in /usr/ports/distfiles/PEAR.
=> Attempting to fetch http://pear.php.net/get/Math_Combinatorics-1.0.0.tgz
fetch: http://pear.php.net/get/Math_Combinatorics-1.0.0.tgz: size mismatch: expected 5787, actual 6234

Reference:	https://people.FreeBSD.org/~sunpoet/checksum/Math_Combinatorics-1.0.0.tgz [1]
Approved by:	portmgr (blanket)
2017-06-11 07:40:44 +00:00
Sunpoet Po-Chuan Hsieh
15c81f5ca2 Remove no-op WX_UNICODE
Approved by:	portmgr (blanket)
2017-06-11 01:56:56 +00:00
Sunpoet Po-Chuan Hsieh
acf74eb390 Update to 1.5.8
- While I'm here, add LICENSE_FILE

Changes:	https://github.com/materialsvirtuallab/pyhull/blob/master/docs/changelog.rst
PR:		219878
Submitted by:	Yuri Victorovich <yuri@rawbw.com> (maintainer)
2017-06-09 18:44:32 +00:00
Wen Heping
507bd26160 - Update to 5.1.2 2017-06-09 13:47:50 +00:00
Wen Heping
92f499161c - Update to 3.32 2017-06-09 13:05:04 +00:00
Mathieu Arnold
c304fb63fd Fix a few lib/pkgconfig → libdata/pkgconfig that crept in between the
exp-run and the commit.

Reported by:	antoine
Sponsored by:	Absolight
2017-06-08 06:50:00 +00:00
Steven Kreuzer
3d9e1915bb Fix breakage on 10.3 2017-06-07 13:01:36 +00:00
Danilo Egea Gondolfo
5b22a88ffc - Update to 7.950.0 2017-06-07 02:52:35 +00:00
Steven Kreuzer
d9df368cea Add support for capsicum 2017-06-06 21:34:35 +00:00
TAKATSU Tomonari
50ba8ccb7c - Update to 1.4-0 2017-06-06 08:44:52 +00:00
TAKATSU Tomonari
dbc924c565 - Update to 0.7.900.2.0 2017-06-06 08:26:34 +00:00
Danilo G. Baio
cc3cd9ec93 math/py-keras: Update to 2.0.4
While here, limit python for use any version up to 3.5

PR:		219743
Submitted by:	Neel Chauhan <neel@neelc.org> (maintainer)
Approved by:	garga (mentor)
Differential Revision:	https://reviews.freebsd.org/D11051
2017-06-06 01:32:12 +00:00
Koop Mast
3ee2ede56e Update gnome-calculator to 3.24.0.
* add licence
* Review dependacies
* switch to uses=localbase

Obtained from:	gnome devel repo (based on)
2017-06-05 13:42:12 +00:00
Bryan Drewery
f3af3367aa Allow these ports to build with PACKAGE_BUILDING_FLAVORS set.
Poudriere in particulr did not properly handle DEPENDS_ARGS which
made these ports not properly install dependencies.  That bug
is being addressed along with adding FLAVORS support to it.

With hat:	portmgr
MFH:		2017Q2
2017-06-04 21:49:48 +00:00
Kurt Jaeger
3e9893f75f math/glm: remove flag from MAINTAINER_MODE case
PR:		219737
Submitted by:	pfg
2017-06-04 17:21:00 +00:00
Kurt Jaeger
f95cb6b530 math/glm: update 0.9.7.3 -> 0.9.8.4
- Many changes
- move lib/pkgconfig/glm.pc to libdata/pkgconfig/

PR:		219737
Submitted by:	pfg
Relnotes:	https://github.com/g-truc/glm/releases
2017-06-04 15:57:53 +00:00
Jochen Neumeister
07fedb68c9 - math/lp_solve: Update from 5.5.2.3 to 5.5.2.5
- LICENSE update
- Changelog: http://lpsolve.sourceforge.net/5.5/changes55.htm

PR:				219242
Reported by:	pfg
Approved by:	mayo@oyam.ca (maintainer timeout, 2,5 weeks), miwi (mentor)
Differential Revision:	https://reviews.freebsd.org/D11006
2017-06-03 18:17:41 +00:00
Carlos J. Puga Medina
2ba80cb0dd - Sort USES 2017-06-03 15:07:09 +00:00
Tobias C. Berner
825e5ae253 Update to 1.2.1
PR:		219353
Submitted by:	xmj
Approved by:	xmj (maintainer)
2017-06-03 14:44:02 +00:00
Carlos J. Puga Medina
5437033233 Add new port math/viennacl
ViennaCL is a free open-source linear algebra library for computations on many-core
architectures (GPUs, MIC) and multi-core CPUs. The library is written in C++ and
supports CUDA, OpenCL, and OpenMP (including switches at runtime).

http://viennacl.sourceforge.net/

PR:		219714
Submitted by:	pfg
2017-06-03 14:18:18 +00:00
Tobias C. Berner
0d885880fe Update to 1.1.23
PR:		219354
Submitted by:	xmj
Approved by:	xmj (maintainer)
2017-06-03 13:55:21 +00:00
Pawel Pekala
7f541c6f44 - Add missing NLS option to OPTIONS_DEFINE, LICENSE_FILE
- Register missing dependencies found by stage-qa
- Convert to USES=localbase
- Use options helpers
- Strip gretl-gtk2 plugins
- Regenerate patches with make makepatch, use correct patch naming
2017-06-02 16:42:15 +00:00
Mark Linimon
4ba19e7015 Mark some ports failing on powerpc64. These ports are either new
ports, or had been recently unblocked.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
2017-06-02 15:49:34 +00:00
Johannes M Dieterich
4649989b3d new port: math/clblast. This adds clblast (notice the t!) another BLAS library for GPUs, with the distinct difference that clblast targets portable performance across AMD, Intel, and NVIDIA accelerators.
Reported by:	swills (mentor)
Reviewed by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10919
2017-06-02 00:14:04 +00:00
Steven Kreuzer
cb15fa352a Define LICENSE
Change COPTS to CFLAGS in Makefile
Fix 'Inconsistent operator' error for regress target
2017-06-01 18:29:19 +00:00
Steven Kreuzer
83f32caf68 Update to version 1.5 2017-05-30 13:51:10 +00:00
Sunpoet Po-Chuan Hsieh
8b1d897ff6 Update science/hdf5 to 1.10.1
- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt
2017-05-30 02:56:43 +00:00
Sunpoet Po-Chuan Hsieh
423bf3cab6 Add threading support
- Add USES=readline
- Add PTHREADS and MPI options
- Fix "-lX11 not found" warning
- Add test targets
- Bump PORTREVISION for dependency and package change

PR:		219597
Submitted by:	Yuri Victorovich <yuri@rawbw.com> (maintainer)
2017-05-29 17:24:23 +00:00
Sunpoet Po-Chuan Hsieh
788b305b1f Update to 0.20.1
Changes:	https://github.com/pandas-dev/pandas/releases
PR:		219620
Submitted by:	John W. O'Brien <john@saltant.com> (maintainer)
2017-05-29 15:28:52 +00:00
Antoine Brodin
034b4e6d7d Register dependency on groff
PR:		213725
2017-05-29 11:32:14 +00:00
Mark Linimon
6a67297b00 Mark some ports failing on armv6, for errors classified as "clang".
While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
2017-05-27 15:07:11 +00:00
Mark Linimon
c52a715800 Mark some ports failing on armv6, for errors classified as "???",
part 2.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
2017-05-27 00:20:19 +00:00
Baptiste Daroussin
1f05404eec Register dependency on groff 2017-05-25 14:35:49 +00:00
TAKATSU Tomonari
658091ed39 - Update to 1.1.0 2017-05-25 03:15:54 +00:00
Johannes M Dieterich
bba9c0be7c math/blis: Change to also always compile a shared library version of the library. This is in line with other BLAS libraries in the tree.
While there, correct LOCALBASE to be PREFIX.

Reviewed by:	swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10865
2017-05-25 01:25:46 +00:00
Matthew Rezny
b760897dde Revision bump of all ports with USE_GL after consolidation of mesa-libs
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10845
2017-05-23 05:03:14 +00:00
Mark Linimon
82c3cac0d2 Mark some ports failing on power64. In cases where the error message
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Reported by:	swills
2017-05-22 16:04:19 +00:00
Mark Linimon
65f2e41ca3 Mark some ports failing on power64. In cases where the error message
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
Reported by:	swills
2017-05-21 13:21:04 +00:00
Johannes M Dieterich
fc4e400f59 new port: math/blis
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries. The framework was designed to isolate essential kernels of computation that, when optimized, immediately enable optimized implementations of most of its commonly used and computationally intensive operations. BLIS is written in ISO C99 and available under a BSD3CLAUSE. While BLIS exports a new BLAS-like API, it also includes a BLAS compatibility layer which gives application developers access to BLIS implementations via traditional BLAS routine calls. (from their github)

Reviewed by:	swills (mentor)
Approved by:	swills (mentor)
Differential Revision:	https://reviews.freebsd.org/D10811
2017-05-20 23:09:23 +00:00
Mark Linimon
74fa808d34 Mark some ports failing on power64. In cases where the error message
was a stub, provide a real one.

While here, pet portlint.

Reported by:	swills
Approved by:	portmgr (tier-2 blanket)
2017-05-20 16:58:10 +00:00
Tobias C. Berner
fefa17ba06 Update math/cadabra2 to 2.1.4
* Add patch patch-core_cadabra2.in, to get proper shebang in bin/cadabra2.

PR:		218985
Submitted by:	Yuri Victorovich <yuri@rawbw.com>
Approved by:	Yuri Victorovich (maintainer), rakuco (mentor, implicit)
Differential Revision:	https://reviews.freebsd.org/D10761
2017-05-20 16:03:46 +00:00
TAKATSU Tomonari
26dc61d74e - Update to 2.2.1 2017-05-19 05:11:36 +00:00
Wen Heping
a6c617235a - Update to 5.1.1 2017-05-17 10:46:16 +00:00
Sunpoet Po-Chuan Hsieh
3ff3326d14 Update to 2.80
- Add USES=dos2unix

Changes:	http://search.cpan.org/dist/Math-Polynomial-Solve/Changes
2017-05-16 18:18:36 +00:00
Jochen Neumeister
fc373ceed2 - Update maintainer address
Reviewed by:	miwi (mentor)
Differential Revision:	https://reviews.freebsd.org/D10755
2017-05-16 13:37:51 +00:00
Danilo Egea Gondolfo
97d9854497 - Update to 7.900.1 2017-05-15 14:45:40 +00:00
Mark Linimon
7e4f41c690 Mark some ports failing on power64. In cases where the error message
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
2017-05-13 23:21:37 +00:00
Sunpoet Po-Chuan Hsieh
7db8084305 Update to 1.10
Changes:	http://search.cpan.org/dist/Math-Utils/Changes
2017-05-11 21:02:31 +00:00
Antoine Brodin
b3a8d5547e Properly register dependency on libomp.so from devel/openmp port 2017-05-10 19:50:12 +00:00
Sunpoet Po-Chuan Hsieh
c9f7016df9 Update to 0.14
- Add NO_ARCH

Changes:	https://bitbucket.org/ronaldoussoren/altgraph/src/default/doc/changelog.rst
2017-05-09 12:59:01 +00:00
Danilo Egea Gondolfo
661a658575 - Update to 7.900.0 2017-05-08 18:27:24 +00:00
Danilo G. Baio
f8cc2c102f Update my email address
Approved by:	garga (mentor)
Differential Revision:	https://reviews.freebsd.org/D10648
2017-05-08 17:21:49 +00:00
TAKATSU Tomonari
1f67dd2f47 - Update to 0.6-13 2017-05-07 21:41:06 +00:00
TAKATSU Tomonari
55cf20a31c - Add new port: math/R-cran-expm
Computation of the matrix exponential, logarithm, sqrt, and related
  quantities.

  WWW: https://cran.r-project.org/web/packages/expm/
2017-05-07 09:03:47 +00:00
TAKATSU Tomonari
2c9fefcddd - Updatet to 1.8-0 2017-05-07 07:25:22 +00:00
TAKATSU Tomonari
54a001ca49 - Update to 1.1-13 2017-05-07 06:47:47 +00:00
TAKATSU Tomonari
901bef8ce3 - Update to 1.2.6 2017-05-07 06:34:55 +00:00
TAKATSU Tomonari
549be15a04 - Update to 0.1-14
- Add "compiles" argument to USES=cran
2017-05-06 23:07:40 +00:00
TAKATSU Tomonari
1aaaa0d189 - Update to 5.33 2017-05-06 22:21:33 +00:00
Martin Wilke
8e36d4a981 Rsolnp: General Non-Linear Optimization
General Non-linear Optimization Using Augmented Lagrange Multiplier
Method.

WWW: http://cran.r-project.org/web/packages/Rsolnp/

PR:		213102
Submitted by:	Pedro Giffuni
2017-05-06 15:15:00 +00:00
Martin Wilke
cef0a38b1d qualityTools: Statistical Methods for Quality Science
Contains methods associated with the Define, Measure, Analyze, Improve and
Control (i.e. DMAIC) cycle of the Six Sigma Quality Management
methodology.It covers distribution fitting, normal and non-normal process
capability indices, techniques for Measurement Systems Analysis especially
gage capability indices and Gage Repeatability (i.e Gage RR) and
Reproducibility studies, factorial and fractional factorial designs as
well as response surface methods including the use of desirability
functions.

WWW: http://www.r-qualitytools.org/

PR:		213104
Submitted by:	Pedro Giffuni
2017-05-06 15:12:57 +00:00
TAKATSU Tomonari
8ca4e272f2 - Update to 0.9-5 2017-05-04 23:54:48 +00:00
Tobias C. Berner
157ec65f58 Fix shebangs
* Make the implicit dependency on python explicit.

Reviewed by:		mat
Approved by:		mat
Differential Revision:	https://reviews.freebsd.org/D10527
2017-05-04 05:21:43 +00:00
Tobias C. Berner
55ba82c629 Fix shebangs
Reviewed by:		mat
Approved by:		mat
Differential Revision:	https://reviews.freebsd.org/D10527
2017-05-04 05:20:31 +00:00
TAKATSU Tomonari
41834d9390 - Update to 0.4-7 2017-05-04 03:00:36 +00:00
TAKATSU Tomonari
ef88b6c864 - Update to 0.3.3.3.0 2017-05-04 01:40:24 +00:00
TAKATSU Tomonari
884fb441c6 - Update to 1.77 2017-05-03 21:05:36 +00:00
TAKATSU Tomonari
58da23223a - Update to 8.0 2017-05-03 20:24:31 +00:00
TAKATSU Tomonari
8aeee7c6d5 - Update to 0.7.800.2.0 2017-05-03 20:06:06 +00:00
TAKATSU Tomonari
ef5d2caeb6 - Update to 1.0.5 2017-05-03 19:16:50 +00:00