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Author SHA1 Message Date
Philip M. Gollucci
b339872c92 - Reset more ports I don't use anymore 2010-02-10 21:47:48 +00:00
Edwin Groothuis
8658684e4b Update to 3.1.2 2010-02-10 09:47:48 +00:00
Wen Heping
22c4fef9a0 - Update to 2.00 2010-02-10 06:10:33 +00:00
Dirk Meyer
ca9c60461c - update to jpeg-8 2010-02-05 11:46:55 +00:00
Wen Heping
49bdce58bc - Update to 0.99 
- Update my mail address to FreeBSD
 2010-02-03 08:25:35 +00:00
Martin Wilke
53fc8b212a - Update to 3.1.1 
PR:		143437
Submitted by:	Ports Fury
 2010-02-02 22:42:47 +00:00
Philip M. Gollucci
bc7c753e14 - use $SUB_FILES to dynamically adjust pkg-message 
PR:             ports/142408
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Approved by:    fernan@iib.unsam.edu.ar (maintainer)
 2010-01-31 03:42:20 +00:00
Jun Kuriyama
326d89e098 - Remove unneeded dependencies which is in perl-5.8.9 dist 
(part 19; last!).

Approved by:	portmgr (itetcu)
 2010-01-29 14:52:21 +00:00
Philip M. Gollucci
f6af25aa4a - actually remove old patch 
Reported by:	QAT
 2010-01-17 00:16:34 +00:00
Philip M. Gollucci
c49b8e0836 - Fix on amd64 
PR:             ports/142472
Submitted by:   Edmund Sumbar <esumbar@ualberta.ca>
 2010-01-16 17:54:38 +00:00
Jun Kuriyama
cbffb3af9d - Remove unneeded dependencies which is in perl-5.8.9 dist from ports 
maintained by (perl|ports|kuriyama)@FreeBSD.org.

- Targets are: Test::Simple, Digest::MD5, Locale-Maketext,
  ExtUtils::MakeMaker, ExtUtils::ParseXS, File::Temp, Getopt::Long,
  Encode, Digest, Pod::Parser, File::Spec.
 2010-01-16 14:45:49 +00:00
Philip M. Gollucci
3781ecad36 - SUB_FILES += pkg-message 
PR:             ports/142407
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2010-01-09 23:51:26 +00:00
Wen Heping
d938c73fdc - Update to 1.03 
- Update my mail address to FreeBSD
 2010-01-09 01:21:21 +00:00
Philip M. Gollucci
8086ac7032 - SBU_FILES += pkg-message 
PR:             ports/142409
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
 2010-01-08 01:30:20 +00:00
Wen Heping
959567bbb7 - Update to 1.995 2010-01-07 02:27:20 +00:00
Wen Heping
43d8e24a17 - Update to 1.53 
PR:		ports/142221
Submitted by:	Wen Heping (myself)
Approved by:	maintainer
 2010-01-06 00:29:25 +00:00
Wen Heping
47dea29df8 python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees) 
reader for python.

WWW:    http://simon.net.nz/articles/python-nexus
 2009-12-29 13:39:14 +00:00
Wen Heping
4beee06b6b - Fix fetch error 2009-12-27 03:05:03 +00:00
Wen Heping
a70e97a715 - Update to 0.3.7 2009-12-24 03:14:34 +00:00
Martin Wilke
3cb69b845f - Update to 7.1.11 
PR:		141812
Submitted by:	Ports Fury
 2009-12-22 11:25:15 +00:00
Wen Heping
ac98d03ccc - Update to 0.3.5 2009-12-21 03:29:55 +00:00
Doug Barton
2fadfa2cfb For ports maintained by ports@FreeBSD.org, remove names and/or 
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
 2009-12-21 02:19:12 +00:00
Wen Heping
46e3211a5d - Update to 1.1.4 
Submitted by:	Wen Heping (myself)
Approved by:	maintainer (via Email)
 2009-12-18 02:55:57 +00:00
Wen Heping
eb83a3ad9d - Update to 1.4 
- Update my mail address to FreeBSD
 2009-12-17 06:51:53 +00:00
Wen Heping
e514f1a729 - Update to 0.3.4 2009-12-16 12:48:04 +00:00
Philip M. Gollucci
89c63fe984 - Turn over a bunch of p5- ports that change infrequently to perl@ 
so more people can look at them.
 2009-12-13 18:07:49 +00:00
Wen Heping
d64a5ae397 - Update to 1.994 2009-12-11 08:02:53 +00:00
Wen Heping
5a07a83836 - Update to 0.3.3 2009-12-06 08:47:36 +00:00
Wen Heping
ad74a3628a - Update to 1.993 2009-12-04 11:53:48 +00:00
Wen Heping
e2b9177a1b - Update to 1.6.1 
Approved by:	maintainer (via Email)
 2009-12-04 11:50:10 +00:00
Max Brazhnikov
7cb3294da7 Chase math/gsl update, 
bump PORTREVISION
 2009-12-01 20:33:45 +00:00
Wen Heping
564d9e9ea8 - Update to 2.0.12 
- Update my mail address to FreeBSD
 2009-11-29 01:16:36 +00:00
Sylvio Cesar Teixeira
ba072d1713 - Update my mail address to FreeBSD 
Approved by:	miwi (mentor)
 2009-11-27 22:52:30 +00:00
Pav Lucistnik
38eb8c5339 - Mark MAKE_JOBS_UNSAFE 
Reported by:	pointyhat
 2009-11-20 22:53:09 +00:00
Wen Heping
40efa7ff9b - Update to 1.992 
- Update my mail address to FreeBSD
 2009-11-20 05:10:17 +00:00
Martin Wilke
0625d15cec - broken checksum mismatch 2009-11-19 12:43:06 +00:00
Pav Lucistnik
ed9c0642a6 - Mark MAKE_JOBS_UNSAFE 
Reported by:	pointyhat
 2009-11-18 22:39:55 +00:00
Wen Heping
695ed5163e pyfasta is a python module for fast, memory-efficient, pythonic 
access to fasta sequence files.

WWW:    http://bitbucket.org/brentp/biostuff/src/
 2009-11-18 05:53:17 +00:00
Wen Heping
fad82e7fd4 - Update to 21.1.1 2009-11-18 05:33:10 +00:00
Dmitry Marakasov
8dbd1070da Velvet is a de novo genomic assembler specially designed for short read 
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).

Citation:

Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)

WWW: http://www.ebi.ac.uk/~zerbino/velvet/

PR:		140147
Submitted by:	Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
 2009-11-07 01:23:59 +00:00
Pav Lucistnik
975c364f32 - Annotate that 8.x no longer needs libmap hack 
Reported by:	rene
 2009-10-01 07:34:28 +00:00
Wen Heping
9c55d004d3 - Update to 4.0.0 
- Update my mail address to FreeBSD

PR:		ports/137652
Submitted by:	wenheping@gmail.com(myself)
Approved by:	miwi(mentor)
Feature safe:	yes
 2009-09-23 01:06:29 +00:00
Jason Evans
97df6db5cb Update to Crux 1.2.0. 
Feature safe:	yes
 2009-09-19 17:58:13 +00:00
Renato Botelho
3905d8ced0 UNBREAK: Probably was a temporary failure, checksums are ok now. 
Feature safe:	yes
 2009-09-16 15:57:18 +00:00
Martin Wilke
d583c2c02f -Update to 3.69 
PR:		138813
Submitted by:	Ports Fury
Feature safe:	yes
 2009-09-16 14:27:00 +00:00
Gerald Pfeifer
27ab5137ce Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 
implies lang/gcc44 up from lang/gcc43.

Approved by:	portmgr
 2009-09-13 00:08:01 +00:00
Philippe Audeoud
64f2f2465b - Update to 1.14 2009-09-08 12:08:12 +00:00
Martin Wilke
2f12ae5444 - Update to 138038 
PR:		138038
Submitted by:	Wen Heping <wenheping@gmail.com>
Approved by:	maintainer
 2009-09-04 20:41:25 +00:00
Martin Wilke
4e4a5fc43b - Update to 0.982 
PR:		138264
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-08-28 23:36:45 +00:00
Martin Wilke
ab94a3bda7 Bio::SCF module allows you to read and update (in a restricted 
way) SCF chromatographic sequence files. It is an interface to
Roger Staden's io-lib. See the installation directions for further
instructions.

WWW:	http://search.cpan.org/dist/Bio-SCF/

PR:		ports/138263
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-08-28 23:36:09 +00:00