Commit graph

1974 commits

Author SHA1 Message Date
Mikhail Teterin
02bb94332a Upgrade from 4.2r3 to 4.2.7 (this neccessitated EPOCH bump).
Unbreak, untangle. Stop fetching/installing documents (other
than man-pages) -- these are available online.

Using standard libtool instead of the bundled one fails -- an
autotools expert should take a closer look.
2012-04-21 18:07:21 +00:00
TAKATSU Tomonari
bfb6ebd8d0 - Add a new port: science/R-cran-som
Self-Organizing Map (with application in gene clustering)

  WWW:	http://cran.r-project.org/web/packages/som/
2012-04-19 12:43:14 +00:00
Jose Alonso Cardenas Marquez
0a6256b52f - Bump PORTREVISION (freepascal ports were updated) 2012-04-19 06:51:44 +00:00
Pawel Pekala
02c3ca4376 DL_POLY is a general purpose classical molecular dynamics (MD) simulation
software developed at Daresbury Laboratory by I.T. Todorov and W. Smith.

WWW: http://ccpforge.cse.rl.ac.uk/gf/project/dl_poly_classic/

PR:		ports/166725
Submitted by:	Jason Bacon <jwbacon@tds.net>
2012-04-17 17:35:33 +00:00
Carlo Strub
d2349922e1 Update to 3.11.0 2012-04-14 18:41:27 +00:00
Wen Heping
2c96383024 - Update to 0.7.3 2012-04-11 07:17:21 +00:00
Baptiste Daroussin
ba56649f1a Mark as deprecated and set expiration to 2012-05-10 for ports that are mark as broken for more than 6 month 2012-04-09 23:51:44 +00:00
Martin Wilke
2413206f0c - Remove unnecessary LIB_DEPENDS for x11-toolkits/fltk
- Switch to textproc/xerces-c3 instead of textproc/xerces-c2
- Add LICENSE
- Add MAKE_JOBS_SAFE
- Support CFLAGS properly

PR:		166050
Submitted by:	Ports Fury
Approved by:	maintainer
Feature safe:	yes
2012-04-08 10:31:29 +00:00
Gerald Pfeifer
e89f13b555 Replace USE_GCC=4.5+ by USE_GCC=4.6+ which has been transparently
done by the ports infrastructure for a while.

Approved by:	maintainer timeout
Feature safe:	yes
2012-04-07 15:31:51 +00:00
TAKATSU Tomonari
b671fd7f85 - Update to 1.1.34
Feature safe:	yes
2012-03-31 05:51:31 +00:00
Martin Wilke
0029b6f897 - Update to 3.3.3a
- Pass maintainership to submitter

PR:		166090
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com>
Feature safe:	yes
2012-03-18 04:47:23 +00:00
Martin Wilke
9edc097bcc - Update to 0.8.6
- Pass maintainership to submitter

PR:		166101
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com>
Feature safe:	yes
2012-03-18 04:45:11 +00:00
Gerald Pfeifer
556a3ec7c2 Replace USE_GCC=4.5+ by USE_GCC=4.6+ which has been transparently
done by the ports infrastructure for a while.

Approved by:	maintainer (thierry)
Feature safe:	yes
2012-03-17 11:39:09 +00:00
Philip M. Gollucci
63402e204c - Chase math/ruby-netcdf -> science/ruby-netcdf rename 2012-03-08 04:50:36 +00:00
Philip M. Gollucci
3c4d5b6416 - update to 0.6.6
- add and update URLs of MASTER_SITES
- update author's email address
- use @dirrmtry
- change port category from math to science.

- Completes repo copy from math/ruby-netcdf -> science/ruby-netcdf

PR:             ports/165314
Submitted by:   Shin-ya Murakami <murashin@gfd-dennou.org>
2012-03-08 04:34:40 +00:00
Wen Heping
05b7e29736 - Update to 0.9.9 2012-03-06 06:32:28 +00:00
TAKATSU Tomonari
c6102ed6d4 - Update to 0.2-5
- Fix LICENSE section
2012-03-05 12:47:36 +00:00
Brendan Fabeny
2dbc7784bc update math/R to 2.14.2, and adjust dependent ports 2012-03-03 16:59:36 +00:00
TAKATSU Tomonari
8d1ac42ef1 - Update to 5.4.4
- Enable gtk by default
- Make use of PORTDOCS and PORTEXAMPLES

PR: ports/165350 (based on)
Submitted by: Shin-ya Murakami (maintainer)
2012-02-21 16:24:19 +00:00
Wen Heping
5b8852c4fc - Update to 2.14.1.6 2012-02-20 08:52:38 +00:00
Philip M. Gollucci
7b72e2dc73 - Update to 1.6.3
- add and update URLs of MASTER_SITES
- add LICENSE related lines
- update author's email address
- update WWW site URL to shorter version

PR:             ports/165232
Submitted by:   Shin-ya Murakami <murashin@gfd-dennou.org> (maintainer)
Sponsored by:   RideCharge Inc. / TaxiMagic
2012-02-17 22:22:43 +00:00
Ashish SHUKLA
97ddb4e13d - Bump PORTREVISION to chase the update of multimedia/libvpx 2012-02-16 15:57:34 +00:00
Wen Heping
6f2296f0c8 - Update to 2.14.1.5 2012-02-13 06:47:15 +00:00
Gabor Pali
80cfee18ce - Update to 0.5.1
Obtained from:	FreeBSD Haskell
2012-02-13 05:20:41 +00:00
Eitan Adler
69ce299b82 -Update to 2.8
-Wrap long lines
-Fix java paths so the hdfview script works
-Add jpeg support
-Build javadoc
-Prevent implicit dependencies

PR:		ports/163601
Submitted by:	Rob Farmer <rfarmer@predatorlabs.net> (maintainer)
2012-02-13 05:12:38 +00:00
Eitan Adler
aac32349c9 Update to 1.8.8
Changes:

Fix bad shell scripts; all regression tests pass now

PR:		ports/163595
Submitted by:	Rob Farmer <rfarmer@predatorlabs.net>
Approved by:	maintainer timeout (49 days)
2012-02-13 03:31:53 +00:00
TAKATSU Tomonari
6d2d9fe63e - Add a new port: science/R-cran-e1071
Functions for latent class analysis, short time Fourier transform,
  fuzzy clustering, support vector machines, shortest path computation,
  bagged clustering, naive Bayes classifier, ...

  WWW:	http://cran.r-project.org/web/packages/e1071/
2012-02-11 02:26:29 +00:00
Matthew Seaman
e206ed4e79 Fix the two affected ports
PR:		163963
Approved by:	maho (maintainer) shaun (mentor)
2012-02-10 09:33:05 +00:00
Wen Heping
845dfcbfb7 - Update to 0.6.2 2012-02-09 00:12:41 +00:00
Wen Heping
9293127bf6 - Update to 1.21
ChangeLog: http://cpansearch.perl.org/src/PSANNES/Geo-BUFR-1.21/Changes
2012-02-08 07:25:19 +00:00
Greg Lewis
6a176d152d . Update to 2.3_4.
. Fix Java version detection for OpenJDK.
. Remove RESTRICTED and manual download as the source is now freely available.

PR:		164814
Approved by:	Yuri Khotyaintsev <yuri@irfu.se> (MAINTAINER)
2012-02-07 04:00:04 +00:00
Wen Heping
45af5b2153 - Update to 2.14.1.0 2012-02-05 02:21:43 +00:00
Wen Heping
d1bcd54990 - Update distinfo because distfile was rerolled upstream [1]
- Reset maintainer

PR:		ports/163599 [1]
Submitted by:	Rob Farmer <rfarmer@predatorlabs.net> [1]
2012-02-04 07:44:50 +00:00
TAKATSU Tomonari
c9364214cc - Remove science/R-cran-survival which has been already included in math/R
Reported by:	pointyhat (pav)
2012-02-03 12:04:14 +00:00
Carlo Strub
faad8b9921 Update to 3.10.1
Approved by:	glarkin@ (mentor, implicit)
2012-01-31 23:23:38 +00:00
TAKATSU Tomonari
ef0525aaad - Add a new port: science/R-cran-survival
survival analysis: descriptive statistics, two-sample tests,
  parametric accelerated failure models, Cox model. Delayed entry
  (truncation) allowed for all models; interval censoring for parametric
  models. Case-cohort designs.

  WWW:	http://cran.r-project.org/web/packages/survival/
2012-01-31 13:22:44 +00:00
TAKATSU Tomonari
1d6516ce7c - Add a new port: science/R-cran-snow
The snow package provides support for simple parallel computing on a
  network of workstations using R.  A master R process calls makeCluster
  to start a cluster of worker processes; the master process then uses
  functions such as clusterCall and clusterApply to execute R code on
  the worker processes and collect and return the results on the master.
  This framework supports many forms of "embarrassingly parallel"
  computations.

  Snow can use one of four communications mechanisms: sockets, PVM, MPI,
  or NetWorkSpaces (NWS).  NWS support was provided by Steve Weston.
  PVM clusters use the rpvm package; MPI clusters use package Rmpi; NWS
  clusters use package nws.  If pvm is used, then pvm must be started,
  either using a pvm console (e.g the pvm text console or the graphical
  xpvm console, both available with pvm) or from R using functions
  provided by rpvm.  Similarly, LAM-MPI must be started, e.g.  using
  lamboot, for MPI clusters that use Rmpi and LAM-MPI.  If NWS is used,
  the NetWorkSpaces server must be running.  SOCK clusters are the
  easiest approach for using snow on a single multi-core computer as
  they require no additional software.

  WWW:	http://cran.r-project.org/web/packages/snow/
2012-01-31 13:14:19 +00:00
TAKATSU Tomonari
bd0df873df - Update to 1.1.33
- Add LICENSE
2012-01-26 11:34:06 +00:00
Alberto Villa
f234761615 The KDE/FreeBSD team is pleased to announce KDE SC 4.7.4, which
concludes the 4.7 series.

The official release notes can be found at:
http://kde.org/announcements/announce-4.7.4.php

PR:		162216
PR:		163662
2012-01-25 10:21:01 +00:00
Eitan Adler
c59a3834c4 At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:	portmgr
2012-01-21 17:40:15 +00:00
Brendan Fabeny
6ef707b384 update math/R to 2.14.1, and adjust dependent ports 2012-01-18 23:04:08 +00:00
Wen Heping
a193a68008 The obspy.taup package contains Python wrappers for iaspei-tau - a travel
time library by Arthur Snoke (http://www.iris.edu/pub/programs/iaspei-tau/).
The library iaspei-tau is written in Fortran and interfaced via Python ctypes.

WWW: http://www.obspy.org/
2012-01-16 06:55:05 +00:00
Dirk Meyer
8075eba87e - fix build with gcc46 2012-01-14 09:14:53 +00:00
Wen Heping
61fb002e92 - update to 0.5.1 2012-01-11 05:52:18 +00:00
Wen Heping
01b778bd3c - update to 0.5.1 2012-01-11 05:41:26 +00:00
Wen Heping
fed8751eda - update to 0.6.1 2012-01-11 05:33:54 +00:00
Wen Heping
2946327d1a - update to 2.14.0.2 2012-01-11 05:21:42 +00:00
Sunpoet Po-Chuan Hsieh
6cf559bba1 - Update to 0.010
Changes:	http://search.cpan.org/dist/Geo-WebService-Elevation-USGS/Changes
2012-01-07 17:37:32 +00:00
Jason Helfman
a756ea4f17 - Reassignment of ECHO_MSG breaks 'make readme', so remove and reformat IGNORE.
PR:	 	ports/163255
Submitted by:	jgh (me)
Approved by:	crees (mentor)
2012-01-03 02:34:10 +00:00
Wen Heping
4e860ae744 - Update to 1.3.1 2011-12-31 08:04:46 +00:00