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Author SHA1 Message Date
Devin Teske
c0e7acf2f2 [New Port] math/R-cran-ADGofTest: Anderson-Darling GoF test 
Anderson-Darling GoF test in R with p-value calculation based on Marsaglia's
2004 paper "Evaluating the Anderson-Darling Distribution."

WWW: https://cran.r-project.org/web/packages/ADGofTest/

Reviewed by:	imp (mentor), mat (mentor)
Approved by:	imp (mentor), mat (mentor)
Differential Revision:	https://reviews.freebsd.org/D22673
 2020-01-02 17:58:20 +00:00
Baptiste Daroussin
8e7bfc56cf Update to 0.9.1 2020-01-02 08:24:37 +00:00
Piotr Kubaj
5f582b73ab math/gretl: fix build on GCC architectures 
Since the last upgrade, gretl requires C11:
../lib/src/bhhh_max.c:37: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'Lval'

Fix this by adding USES=compiler:c11 and replacing OPENMP_USES=compiler:openmp with OPENMP_USE=GCC=yes. This sets the correct CC.

PR:		243027
Approved by:	yuri (maintainer)
 2020-01-01 22:50:04 +00:00
Tobias C. Berner
812e2c1c99 math/wxmaxima: Update to 19.12.4 
PR:		242928
Submitted by:	salvadore (maintainer)
 2020-01-01 22:07:26 +00:00
Sunpoet Po-Chuan Hsieh
320f27e7a7 Update to 1.1.26 
Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
 2020-01-01 16:30:48 +00:00
Rene Ladan
12f974ad28 Resurrect ports depending on devel/openmp. 
These ports will transition transparantly to openmp from base once
FreeBSD 12.0 reaches end-of-life.

Reported by:	jbeich [1] [2]

[1] https://lists.freebsd.org/pipermail/svn-ports-head/2019-May/210482.html
[2] https://lists.freebsd.org/pipermail/svn-ports-head/2019-December/229648.html
 2020-01-01 11:46:08 +00:00
Rene Ladan
f2aea6bcb5 Undeprecate math/blaze and science/chrono per https://lists.freebsd.org/pipermail/svn-ports-head/2019-May/210482.html 2020-01-01 11:30:49 +00:00
Rene Ladan
87d7b8db4a Remove expired ports: 
2019-12-31 accessibility/linux-c6-atk: Superseded by CentOS 7
2019-12-31 audio/exaile-devel: this port is older than audio/exaile
2019-12-31 audio/linux-c6-alsa-lib: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-plugins-oss: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-plugins-pulseaudio: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-utils: Superseded by CentOS 7
2019-12-31 audio/linux-c6-flac: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libaudiofile: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libogg: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libsndfile: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libvorbis: Superseded by CentOS 7
2019-12-31 audio/linux-c6-mikmod: Superseded by CentOS 7
2019-12-31 audio/linux-c6-nas-libs: Superseded by CentOS 7
2019-12-31 audio/linux-c6-openal-soft: Superseded by CentOS 7
2019-12-31 audio/linux-c6-pulseaudio-libs: Superseded by CentOS 7
2019-12-31 audio/linux-c6-pulseaudio-utils: Superseded by CentOS 7
2019-12-31 audio/linux-c6-sdl_mixer: Superseded by CentOS 7
2019-12-31 databases/linux-c6-sqlite3: Superseded by CentOS 7
2019-12-31 databases/linux-oracle-instantclient-sqlplus: Depends on deprecated Centos 6 framework
2019-12-31 devel/linux-c6-dbus-glib: Superseded by CentOS 7
2019-12-31 devel/linux-c6-dbus-libs: Superseded by CentOS 7
2019-12-31 devel/linux-c6-devtools: Superseded by CentOS 7
2019-12-31 devel/linux-c6-elfutils-libelf: Superseded by CentOS 7
2019-12-31 devel/linux-c6-icu: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libgfortran: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libglade2: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libpciaccess: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libsigc++20: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libsoup: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libthai: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libunwind: Superseded by CentOS 7
2019-12-31 devel/linux-c6-nspr: Superseded by CentOS 7
2019-12-31 devel/linux-c6-qt47: Superseded by CentOS 7
2019-12-31 devel/linux-c6-sdl12: Superseded by CentOS 7
2019-12-31 dns/linux-c6-libasyncns: Superseded by CentOS 7
2019-12-31 emulators/linux_base-c6: Superseded by CentOS 7
2019-12-31 ftp/linux-c6-curl: Superseded by CentOS 7
2019-12-31 graphics/cptutils: depends on expired textproc/xml2
2019-12-31 graphics/linux-c6-cairo: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-dri: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-gdk-pixbuf2: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-glx-utils: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-jasper: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-jpeg: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-png: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-sdl_image: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-sdl_ttf: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-tiff: Superseded by CentOS 7
2019-12-31 lang/linux-c6-tcl85: Superseded by CentOS 7
2019-12-31 math/blazeiterative: Depends on expiring devel/openmp
2019-12-31 multimedia/linux-c6-libtheora: Superseded by CentOS 7
2019-12-31 multimedia/linux-c6-libv4l: Superseded by CentOS 7
2019-12-31 net/linux-c6-avahi-libs: Superseded by CentOS 7
2019-12-31 net/linux-c6-openldap: Superseded by CentOS 7
2019-12-31 net/linux-c6-tcp_wrappers-libs: Superseded by CentOS 7
2019-12-31 net/py-soappy: Please consider using net/py-zeep as upstream development is stalled  and recommends using another stalled library stud
2019-12-31 print/linux-c6-cups-libs: Superseded by CentOS 7
2019-12-31 science/openmx: Depends on expiring devel/openmp
2019-12-31 science/py-PyFR: Depends on expiring devel/openmp
2019-12-31 science/py-phono3py: Depends on expiring devel/openmp
2019-12-31 security/linux-c6-audit-libs: Superseded by CentOS 7
2019-12-31 security/linux-c6-cyrus-sasl2: Superseded by CentOS 7
2019-12-31 security/linux-c6-gnutls: Superseded by CentOS 7
2019-12-31 security/linux-c6-libgcrypt: Superseded by CentOS 7
2019-12-31 security/linux-c6-libgpg-error: Superseded by CentOS 7
2019-12-31 security/linux-c6-libssh2: Superseded by CentOS 7
2019-12-31 security/linux-c6-libtasn1: Superseded by CentOS 7
2019-12-31 security/linux-c6-nss: Superseded by CentOS 7
2019-12-31 security/linux-c6-openssl: Superseded by CentOS 7
2019-12-31 security/linux-c6-pam: Superseded by CentOS 7
2019-12-31 security/openssl: OpenSSL 1.0.2 is End-of-Life 2019-12-31 at which  time this port will update to 1.1.1 branch
2019-12-31 sysutils/eventlog: No longer supported by Balabit
2019-12-31 sysutils/linux-c6-lttng-ust: Superseded by CentOS 7
2019-12-31 sysutils/linux-c6-userspace-rcu: Superseded by CentOS 7
2019-12-31 sysutils/mkdesktop: defunct, will be deleted soon
2019-12-31 sysutils/syslog-ng311: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng315: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng317: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng318: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng319: No longer supported by Balabit
2019-12-31 textproc/linux-c6-aspell: Superseded by CentOS 7
2019-12-31 textproc/linux-c6-expat: Superseded by CentOS 7
2019-12-31 textproc/linux-c6-libxml2: Superseded by CentOS 7
2019-10-16 textproc/xml2: Unfetchable, unmaintained
2019-12-31 www/linux-c6-qt47-webkit: Superseded by CentOS 7
2019-12-31 x11/linux-c6-pixman: Superseded by CentOS 7
2019-12-31 x11/linux-c6-xorg-libs: Superseded by CentOS 7
2019-12-31 x11-fonts/linux-c6-fontconfig: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-gtk2: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-openmotif: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-pango: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-qt47-x11: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-tk85: Superseded by CentOS 7
 2019-12-31 17:00:29 +00:00
Rene Ladan
515028feb5 Chase devel/openmp expiration: 
- Sync expiration date of math/blaze with that of devel/openmp
- add science/chrono
 2019-12-31 15:43:20 +00:00
Koichiro Iwao
dc936c406b multiple ports: Update MAINTAINER 
as he got FreeBSD.org account.

PR:		243002
Submitted by:	salvadore
 2019-12-31 13:02:42 +00:00
Yuri Victorovich
4d34bde3ae math/py-arviz: Update 0.5.1 -> 0.6.1 
Reported by:	portscout
 2019-12-31 03:38:02 +00:00
Yuri Victorovich
ae5a03efc1 math/ensmallen: Update 2.10.5 -> 2.11.1 
Reported by:	portscout
 2019-12-31 02:16:08 +00:00
Antoine Brodin
fbeb2a4fcd Unbreak bulk -a 2019-12-29 17:47:31 +00:00
Sunpoet Po-Chuan Hsieh
439a749df4 Update to 3.2.4 
Changes:	https://bitbucket.org/rpy2/rpy2/src/default/NEWS
		https://github.com/rpy2/rpy2/blob/master/NEWS
 2019-12-29 17:33:43 +00:00
Hiroki Sato
e23bb909e7 - Update to 1.5.1. 
- Add -fPIC.
 2019-12-29 15:26:37 +00:00
Sunpoet Po-Chuan Hsieh
c79626c06e Update to 0.15.4 
Changes:	https://github.com/openai/gym/blob/master/README.rst#whats-new
 2019-12-29 12:55:29 +00:00
Sunpoet Po-Chuan Hsieh
6272f4bbab Add py-hdbscan 0.8.24 
HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with
Noise. Performs DBSCAN over varying epsilon values and integrates the result to
find a clustering that gives the best stability over epsilon. This allows
HDBSCAN to find clusters of varying densities (unlike DBSCAN), and be more
robust to parameter selection.

In practice this means that HDBSCAN returns a good clustering straight away with
little or no parameter tuning -- and the primary parameter, minimum cluster
size, is intuitive and easy to select.

HDBSCAN is ideal for exploratory data analysis; it's a fast and robust algorithm
that you can trust to return meaningful clusters (if there are any).

WWW: https://github.com/scikit-learn-contrib/hdbscan
 2019-12-29 12:46:11 +00:00
Jason E. Hale
e7c2832946 math/qalculate: Update to 3.6.0 2019-12-28 20:36:12 +00:00
Jason E. Hale
b216c218bc math/libqalculate: Update to 3.6.0 2019-12-28 20:35:22 +00:00
Wen Heping
af1bc03413 - Update to 0.6.26 2019-12-28 13:05:05 +00:00
Sunpoet Po-Chuan Hsieh
bb1988ae5b Update to 3.2.3 
Changes:	https://bitbucket.org/rpy2/rpy2/src/default/NEWS
		https://github.com/rpy2/rpy2/blob/master/NEWS
 2019-12-28 07:31:15 +00:00
Sunpoet Po-Chuan Hsieh
29cecbe723 Update to 2.1 
- Change MASTER_SITES to CHEESESHOP
- Add NO_ARCH
- Update pkg-descr
- Update WWW
- Take maintainership

Changes:	https://github.com/plastex/plastex/releases
 2019-12-28 07:31:10 +00:00
Sunpoet Po-Chuan Hsieh
681c01c0f3 Unbreak this port after r519944 
- Change RUN_DEPENDS from py-pyglet to py-pyglet12
- Bump PORTREVISION for dependency change
 2019-12-28 07:31:05 +00:00
Yuri Victorovich
7a434e065e math/primesieve: Update 7.4-26 -> 7.5 
Reported by:	portscout
 2019-12-28 07:08:38 +00:00
Marius Strobl
d1e482d908 Add and use a shared INFO description. I have patches to add that knob to 
a bunch of additional ports.
 2019-12-27 19:24:56 +00:00
Baptiste Daroussin
c5fe34636c Update jasper to 2.0.16 
This is needed to be able to update gegl to latest version.
Bump revision of all consumer as the ABI is not 100% backward compatible.
Provide a patch for graphics/devil to properly build with latest jasper.
While here add a missing USES=xorg to graphics/devil
 2019-12-27 13:43:00 +00:00
Baptiste Daroussin
ea2d15f126 update to 1.5.2 2019-12-27 13:31:41 +00:00
Baptiste Daroussin
9aedbdbd82 Update to 1.2.46 
While here replace a patch by BINARY_ALIAS and a build depends on coreutils:
while previous version used to call only once install with the GNU extension -D
in the version this has spreaded a bit more. It is easier then to use directly ginstall
from coreutils than patching makefiles all over the place.
 2019-12-27 09:15:43 +00:00
Baptiste Daroussin
a2abbb121d update to 0.9.0 2019-12-27 09:00:38 +00:00
Yuri Victorovich
63984995f8 math/gretl: Update 2019a -> 2019d 2019-12-26 19:47:42 +00:00
Yuri Victorovich
1dc6cb1c48 math/gretl: Fix build on systems w/out omp.h in the base system; Add the MPI option that is off and broken for now 
Reported by:	fallout
 2019-12-26 19:34:35 +00:00
Yuri Victorovich
65013e9d66 math/csdp: Fix build where omp.h is missing in the base system 
Reported by:	fallout
 2019-12-26 16:32:33 +00:00
Ganael LAPLANCHE
23cb661f63 Update devel/tbb to 2020.0 and bump dependent ports' revisions [1] 
Also, while here, re-generate patches using the makepatch target

[1] Changelog: https://github.com/intel/tbb/blob/v2020.0/CHANGES
 2019-12-26 16:25:22 +00:00
Antoine Brodin
de61a87208 Deprecate a few ports 
With hat:	portmgr
 2019-12-26 07:54:28 +00:00
Antoine Brodin
3d74f744d0 Mark BROKEN 
Reported by:	pkg-fallout
 2019-12-25 08:56:12 +00:00
Tobias Kortkamp
694a285108 math/mkl-dnn: Spell CXXFLAGS_i386 correctly 2019-12-25 07:07:38 +00:00
Yuri Victorovich
faa656bf5f math/py-primme: Update 2.2 -> 3.0 
Reported by:	portscout
 2019-12-25 06:51:05 +00:00
Yuri Victorovich
04375ba26a math/primme: Update 2.2 -> 3.0 
Reported by:	portscout
 2019-12-25 06:50:18 +00:00
Yuri Victorovich
2ccae0d998 math/alglib: Update 3.15.0 -> 3.16.0 
Reported by:	portscout
 2019-12-25 01:57:47 +00:00
Yuri Victorovich
2e15b4aafd math/cadabra2: Update 2.2.7 -> 2.2.8 
Reported by:	portscout
 2019-12-25 01:53:15 +00:00
Yuri Victorovich
0d770c8b05 math/xtensor: Update 0.21.1 -> 0.21.2 
Reported by:	portscout
 2019-12-25 00:44:18 +00:00
Piotr Kubaj
9c71e3245a math/mkl-dnn: fix build on non-x86 
Remove hardcoded -msse4.1 and instead add it to our Makefile, but only on amd64 and i386.

PR:		242847
Approved by:	yuri (maintainer)
 2019-12-24 13:40:02 +00:00
Yuri Victorovich
14388d64e3 math/rumur: Update 2019.11.24 -> 2019.12.22 
Reported by:	portscout
 2019-12-24 07:50:05 +00:00
Eric Turgeon
3c953b617c update math/mate-calc to 1.22.2 2019-12-23 23:27:01 +00:00
Thierry Thomas
f46c47ff71 Remove math/metis-edf: now the regular math/metis is sufficient for Code_Aster. 2019-12-23 20:14:54 +00:00
Thierry Thomas
785dabb6ab Upgrade Code_Aster to 14.4.0-1. 
PR:		242655
 2019-12-23 20:10:09 +00:00
Tobias C. Berner
baa4e84703 math/wxmaxima: Update to 19.12.2 
PR:		242836
Submitted by:	Lorenzo Salvadore <phascolarctos@protonmail.ch> (maintainer)
 2019-12-23 18:20:23 +00:00
Mark Linimon
9d144d4cb1 Fix build on GCC-based systems: 
cc1plus: error: unrecognized command line option "-std=c++11"

Approved by:	portmgr (tier-2 blanket)
 2019-12-22 17:59:20 +00:00
Yuri Victorovich
c4081f1fe7 New port: math/csdp: Solver for semidefinite programming problems 2019-12-22 00:55:53 +00:00
Yuri Victorovich
9c6fef9844 New port: math/rehearse: Algebraic modeling library in C++ for linear optimization solvers 2019-12-21 23:16:45 +00:00