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6127 commits

Author SHA1 Message Date
Yuri Victorovich
25b2db9a7f science/py-gsd: Update 2.4.2 -> 2.5.0 
Reported by:	portscout
 2021-10-14 13:08:01 -07:00
Stefan Eßer
9898f49634 science/py-tensorflow: Add CPE information 
Approved by:	portmgr (blanket)
 2021-10-14 12:27:47 +02:00
Stefan Eßer
206d886b5b science/hdf5-18: Add CPE information 
Approved by:	portmgr (blanket)
 2021-10-14 12:26:39 +02:00
Stefan Eßer
580f698d25 science/hdf5: Add CPE information 
Approved by:	portmgr (blanket)
 2021-10-14 12:26:24 +02:00
Po-Chuan Hsieh
4c34440840
science/rubygem-rgeo-proj4: Update to 3.1.0 
Changes:	https://github.com/rgeo/rgeo-proj4/blob/master/History.md
 2021-10-14 03:17:26 +08:00
Yuri Victorovich
5a01079e22 science/openmc: Unbreak LIBMESH option by switching to mpich 
As it turned out LibMesh fails to compile with OpenMPI-{3,4}
 2021-10-12 13:52:17 -07:00
Piotr Kubaj
b3ab9cf937 science/py-tensorflow: fix build on powerpc64 
The bundled abseil needs the same patch that was already upstreamed.

Approved by: portmgr (blanket: build fix)
PR:	259082
 2021-10-12 18:37:07 +00:00
Tobias Kortkamp
ae22a7846a
*: Clean up some things 
- Fix typos
- Fix overwritten variables with focus on master/slave ports
- Remove unreferenced variables
- Sort categories
- Remove redundant option descriptions
- Clean up commented PORTREVISION
- Add missing USES

Reported by:	portscan
 2021-10-12 17:01:38 +02:00
Wen Heping
e26080783a science/py-pydicom: Update to 2.2.2 2021-10-12 14:58:13 +08:00
Fernando Apesteguía
e2f9834e63 science/afni: update to 21.3.00 2021-10-11 18:20:11 +02:00
Yuri Victorovich
a65d64aec6 science/tinker: Update 8.9.5 -> 8.10.1 
Reported by:	portscout
 2021-10-11 08:51:36 -07:00
Yuri Victorovich
2944d20f6b science/py-OpenMC: New port: Monte Carlo neutron and photon transport simulation code (Python) 2021-10-11 08:51:36 -07:00
Yuri Victorovich
eb26b25084 science/openmc: New port: Monte Carlo neutron and photon transport simulation code 2021-10-10 20:56:33 -07:00
Baptiste Daroussin
2c672a4de9 INSTALLS_ICONS: retire the macro and rework the related dependencies 
While here, make sure gtk-update-icon-cache is only on run dependency
where added as a dependency
Enforce gtk3 to depend on gtk-update-icon-cache (previously it was
inheriting the dependency)
 2021-10-10 21:44:42 +02:00
Yuri Victorovich
4f22ba27cf science/py-PyNE: Add the moab dependency; Install the nuc_data.h5 file; Build in parallel 2021-10-10 11:49:56 -07:00
Wen Heping
57c617781d science/py-netCDF4: Update version 1.3.1=>1.5.7 
PR: 259042
Reported by: wen
Relnotes: https://github.com/Unidata/netcdf4-python/releases/tag/v1.5.7rel
 2021-10-10 10:32:52 -05:00
Ganael LAPLANCHE
036bda781b devel/onetbb: Update to 2021.4.0 
Release notes: https://software.intel.com/content/www/us/en/develop/articles/intel-oneapi-threading-building-blocks-release-notes.html
 2021-10-10 17:11:27 +02:00
Yuri Victorovich
d4af14ddda science/shelxle: Update 1.0.1326 -> 1.0.1328 
Reported by:	portscout
 2021-10-09 22:21:35 -07:00
Yuri Victorovich
7c0a02b1bf science/py-PyNE: New port: PyNE: The Nuclear Engineering Toolkit 2021-10-09 22:21:33 -07:00
Piotr Kubaj
535243e688 science/dynare: fix build on non-amd64 64-bit architectures 
The current Makefile checks only for amd64.

Tested for no breakage on amd64.
 2021-10-08 01:25:19 +00:00
Tobias C. Berner
98a1ae68be KDE: Update KDE Gear to 21.08.2 
Thursday, 7 October 2021

Over 120 individual programs plus dozens of programmer libraries and
feature plugins are released simultaneously as part of KDE Gear.

Today they all get new bugfix source releases with updated translations,
including:

   * kmail: Fix an infinite SSL error dialog loop
   * konqueror: Make it compatible with KIO 5.86.0 and don’t open every
     URL in a new window
   * libksane: Fix multi page detection with certain scanners

Full announcement:
	https://kde.org/announcements/gear/21.08.2/
 2021-10-07 22:48:21 +02:00
Yuri Victorovich
ab8bda9bf6 science/hypre: Update 2.22.1 -> 2.23.0 
Reported by:	portscout
 2021-10-07 11:43:15 -07:00
Yuri Victorovich
8993db196a science/jmol: Update 14.31.53 -> 14.31.57 
Reported by:	portscout
 2021-10-06 09:11:50 -07:00
Yuri Victorovich
34041b742e science/shelxle: Update 1.0.1322 -> 1.0.1326 
Reported by:	portscout
 2021-10-06 09:11:50 -07:00
Fernando Apesteguía
4e6062a59c science/afni: update to 21.2.10 2021-10-06 09:19:56 +02:00
Yuri Victorovich
6014fe2a2f science/opensph: 0.3.8 release was moved to include the OpebVDB fix 2021-10-03 01:53:36 -07:00
Yuri Victorovich
b635bf0d5b science/opensph: Update 0.3.7 -> 0.3.8 
oneTBB is now supported.
 2021-10-02 16:00:02 -07:00
Yuri Victorovich
373f51362e science/tinker: Update 8.9.4 -> 8.9.5 
Reported by:	portscout
 2021-10-02 16:00:01 -07:00
Piotr Kubaj
421f92a120 science/openems: fix build on powerpc64* 
Add FreeBSD names for 64-bit POWER to the check.
 2021-10-01 14:39:19 +00:00
Fernando Apesteguía
292ec73c27 science/afni: update to 21.2.09 2021-10-01 07:41:12 +02:00
Rene Ladan
620968a43a cleanup: drop support for EOL FreeBSD 11.X 
Search criteria used:
- 11.4
- OSREL*
- OSVER*
- *_FreeBSD_11

Input from:
- adridg: devel/qca-legacy
- jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds
- sunpoet: security/p5-*OpenSSL*

Reviewed by:	doceng, kde, multimedia, perl, python, ruby, rust
Differential Revision: https://reviews.freebsd.org/D32008
Test Plan: make index
 2021-09-30 23:23:30 +02:00
Yuri Victorovich
fc03b499c6 science/lammps: Update patch_2Jul2021 -> stable_29Sep2021 
Reported by:	upstream notification
 2021-09-30 10:30:10 -07:00
Yuri Victorovich
8eac9dc021 science/votca: Update 2021.2 -> 2021.2-18560 
This fixed 6 failing testcases. The patch fixing these testcases
doesn't apply to 2021.2, so the port is updated to the latest
commit.
 2021-09-28 17:49:03 -07:00
Po-Chuan Hsieh
fa1a81e87e
science/libaec: Update to 1.0.6 
Changes:	https://gitlab.dkrz.de/k202009/libaec/-/blob/master/CHANGELOG.md
 2021-09-28 03:48:08 +08:00
Po-Chuan Hsieh
9b778e94c8
science/py-spaghetti: Update to 1.6.4 
Changes:	https://github.com/pysal/spaghetti/releases
 2021-09-27 23:56:01 +08:00
Po-Chuan Hsieh
931b97d41f
science/py-h5py: Update version requirement of BUILD_DEPENDS 2021-09-27 23:56:01 +08:00
Yuri Victorovich
c0f1282a1c science/libghemical: Remove LD_PRELOAD vecause it configured now without it 
PR:		258733
Reported by:	mikael
 2021-09-26 10:43:55 -07:00
Mikael Urankar
76a14ebdfd science/nwchem: Mark as broken on aarch64. 2021-09-26 10:25:25 +02:00
Yuri Victorovich
cbc50017fa science/shelxle: Update 1.0.1320 -> 1.0.1322 
Reported by:	portscout
 2021-09-25 22:45:23 -07:00
Yuri Victorovich
6f6a8a2af1 science/siconos: Update 4.4.0.rc4 -> 4.4.0 
PYTHON option is broken.

Reported by:	portscout
 2021-09-25 22:45:19 -07:00
Guangyuan Yang
a7d1c2da92 science/R-cran-fastICA: Update to 1.2-3 2021-09-25 18:13:13 -04:00
Stephen Montgomery-Smith
a841ed9388 science/getdp: Update to 3.4.0. 2021-09-24 12:35:11 -05:00
Yuri Victorovich
fae27f575d science/votca: Update 2021.1 -> 2021.2 
Reported by:	portscout
 2021-09-23 19:04:20 -07:00
Po-Chuan Hsieh
15592565d3
science/py-pyteomics: Update to 4.5 
Changes:	https://github.com/levitsky/pyteomics/releases
		https://pyteomics.readthedocs.io/en/latest/changelog.html
 2021-09-22 06:23:38 +08:00
Po-Chuan Hsieh
8b699cb1f1
science/py-pygeodesy: Update to 21.9.16 
Changes:	https://github.com/mrJean1/PyGeodesy/commits/master
 2021-09-22 06:23:38 +08:00
Po-Chuan Hsieh
39163999ba
science/eccodes: Update to 2.23.0 
Changes:	https://confluence.ecmwf.int/display/ECC/Latest+news
 2021-09-22 06:23:22 +08:00
Yuri Victorovich
3b0c178aab science/py-chempy: Update 0.8.1 -> 0.8.2 
Reported by:	portscout
 2021-09-21 10:47:02 -07:00
Danilo Egea Gondolfo
170cb07fe4 math/armadillo: Update to 10.6.2 
Drop maintainership.
 2021-09-21 10:25:15 +01:00
Po-Chuan Hsieh
43198643e0
science/py-segregation: Update to 2.1.0 
Changes:	https://github.com/pysal/segregation/releases
 2021-09-21 11:44:55 +08:00
Po-Chuan Hsieh
0cbc87f551
science/py-pygeometa: Update to 0.8.0 
Changes:	https://github.com/geopython/pygeometa/releases
		https://github.com/geopython/pygeometa/blob/master/debian/changelog
 2021-09-21 11:44:55 +08:00