Commit graph

703 commits

Author SHA1 Message Date
Wen Heping
8e48712e3e NZMATH is a Python based number theory oriented calculation system.
The centre of development in origin is Tokyo Metropolitan University.
It is freely available and distributed under the BSD license.

WWW: http://tnt.math.se.tmu.ac.jp/nzmath/
2011-06-03 08:10:38 +00:00
Wesley Shields
92ac3e83a4 Graph-tool is an efficient python module for manipulation and statistical
analysis of graphs (a.k.a. networks).

WWW:	http://projects.skewed.de/graph-tool/

PR:		ports/157331
Submitted by:	Dikshie <dikshie@sfc.wide.ad.jp>
2011-06-03 00:42:05 +00:00
Brendan Fabeny
14fd7b71ef Add lrng 20110503, uniform random number generators of P. L'Ecuyer and
his colleagues.
2011-05-29 15:38:23 +00:00
Brendan Fabeny
dc711f5047 Add ltl2ba 1.1, fast translation from LTL formulae to Buechi automata. 2011-05-27 18:11:32 +00:00
Brendan Fabeny
faa8bf0e0a Add R-cran-SuppDists , supplementary distributions and RNG for R. 2011-05-07 05:47:52 +00:00
Rene Ladan
b5931512c7 Remove duplicate ports, add relevant lines to MOVED
devel/common_msgs renamed to devel/ros-common_msgs
math/geometry renamed to math/ros-geometry
2011-05-03 21:09:09 +00:00
Rene Ladan
ef35df4fd1 Connect devel/ros-common_msgs and math/ros-geometry to the build. 2011-05-03 20:54:08 +00:00
Baptiste Daroussin
58523e38be remove unmaintained expired ports from math
2011-05-01 math/fudgit: Upstream disapear and distfile is no more available
2011-05-01 math/kaskade: Upstream disapear and distfile is no more available
2011-05-01 math/qscanplot: Upstream disapear and distfile is no more available
2011-05-01 math/rpc: Upstream disapear and distfile is no more available
2011-05-01 math/ss: Upstream disapear and distfile is no more available
2011-05-01 math/wmcalc: Upstream disapear and distfile is no more available
2011-05-02 07:30:25 +00:00
Rene Ladan
48f1d8c469 Remove most expired ports:
2011-04-17 cad/tclspice: has been broken for more than a year
2011-04-17 comms/hcfmdm: does not compile on 7.X or higher
2011-04-17 databases/mysqlcc: has been broken for almost a year
2011-04-17 devel/ruby-rjudy: does not compile on FreeBSD 7.x or newer
2011-04-17 devel/xfc: does not compile on FreeBSD 7.x or newer
2011-04-17 devel/lamson: has been broken for a half year
2011-04-17 devel/cocktail: does not build on FreeBSD 7.x or newer
2011-04-17 devel/djgpp-gcc: has been broken for half a year
2011-04-17 devel/gauche-sdl: has been broken for a year
2011-04-17 devel/gdb53-act: does not compile on FreeBSD 7.x and up
2011-04-17 editors/zed: does not compile on FreeBSD 7.x or newer
2011-04-17 games/aqbubble: does not compile on FreeBSD 7.x or newer
2011-04-17 graphics/libvisual-plugins: has been broken for 3 years
2011-04-17 japanese/roundcube: has been broken for almost a year
2011-04-17 japanese/tkstep80: does not compile on FreeBSD 7.x or newer
2011-04-17 lang/u++: has been broken for over a half year
2011-04-17 lang/pugs: has been broken for over a year
2011-04-17 lang/mozart: does not compile on FreeBSD 7.x or newer
2011-04-17 math/linalg: does not build on FreeBSD 7.x or newer
2011-04-17 math/R-cran-igraph: has been broken for over a half year
2011-04-17 misc/ftree: has been broken for over a half year
2011-04-17 multimedia/katchtv: has been broken for a half year
2011-04-17 multimedia/libomxil-bellagio: has been broken for almost a year
2011-04-17 multimedia/banshee-mirage: has been broken for over a half year
2011-04-17 net-p2p/trackerbt: has been broken for a half year
2011-04-17 net/cap: does not compile on FreeBSD 7.x or newer
2011-04-17 net/ggsd: does not compile on FreeBSD 7.x or newer
2011-04-17 net/b2bua: does not compile on FreeBSD 7.x or newer
2011-04-17 net/penguintv: has been broken for a half year
2011-04-17 news/openftd: has been broken for almost a year
2011-04-17 palm/romeo: does not compile on FreeBSD 7.x or newer
2011-04-17 science/pcp: does not compile on FreeBSD 7.x or newer
2011-04-17 science/elmer-fem: has been broken for over a year
2011-04-17 security/newpki-lib: does not compile on FreeBSD 7.x or newer
2011-04-17 security/newpki-server: does not compile on FreeBSD 7.x or newer
2011-04-17 security/xmlsec: does not compile on FreeBSD 7.x or newer
2011-04-17 security/f-protd: has been broken for over a year
2011-04-17 sysutils/xwlans: does not compile on FreeBSD 7.x or newer
2011-04-17 www/bk_edit: does not compile on FreeBSD 7.x and newer
2011-04-17 www/bricolage: has been broken for a half year
2011-04-17 x11-toolkits/gauche-gtk: has been broken for a year
2011-04-17 x11-toolkits/gambas2-gb-qt: has been broken for over a year
2011-04-17 x11-toolkits/php-gtk2: has been broken for over a half year
2011-04-17 x11-toolkits/p5-Tcl-Tk: has been broken for 2 year
2011-04-17 x11/metisse: has been broken for over a half year
2011-04-18 22:25:41 +00:00
Rene Ladan
0b2ebd1086 Remove expired port:
2011-04-07 math/linux-SHA-1_collision_search_graz: Project discontinued
2011-04-07 22:33:39 +00:00
Martin Wilke
b251294128 Cryptographically-secure, cross-platform replacement for rand()
WWW: http://search.cpan.org/dist/Math-Random-Secure

PR:		ports/155574
Submitted by:	Dereckson <dereckson at gmail.com>
2011-03-17 16:05:22 +00:00
Dmitry Marakasov
b7019609cf Math::Polygon::Tree creates a B-tree of polygon parts for fast check
if object is inside this polygon. This method is effective if polygon
has hundreds or more segments.

WWW:	http://search.cpan.org/dist/Math-Polygon-Tree/
2011-03-12 00:10:39 +00:00
Dmitry Marakasov
d8e1644f10 Math::Geometry::Planar::GPC::Polygon - OO wrapper to gpc library
WWW:	http://search.cpan.org/dist/Math-Geometry-Planar-GPC-Polygon/
2011-03-12 00:09:52 +00:00
Wen Heping
fe1c8ed8db R-cran-mvtnorm computes multivariate normal and t probabilities, quantiles,
random deviates and densities.

WWW: http://cran.r-project.org/package=mvtnorm
2011-03-08 07:57:18 +00:00
Wen Heping
cf5d814d5e Statistics::R will permit the control of the the R (R-project) interpreter
through Perl in different architectures and OS.

WWW: http://search.cpan.org/dist/Statistics-R/
2011-03-07 07:07:18 +00:00
Li-Wen Hsu
28d0044182 Add py-pybloom 1.0.3, a Probabilistic data structure. 2011-02-20 10:04:42 +00:00
Maho Nakata
030a58883d LAPACKE is a standard C language APIs for LAPACK, which introduces
the following features[1]:
- row-major and column-major matrix layout controlled by the first function
parameter;
- an implementation with working arrays (middle-level interface) as well as
without working arrays (high-level interface);
- input scalars passed by value;
- error code as a return value instead of the INFO parameter.

[1] Intel Corporation. "C Interface to LAPACK" README. 2010.

WWW: http://www.netlib.org/lapack/

PR:             153045
Submitted by:   Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp>
2011-02-17 00:47:57 +00:00
Martin Wilke
4212a766e0 The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is fl-core.

  The package contains code for basic functions in Fuzzy Logic for Octave.

WWW: http://octave.sourceforge.net/

PR:		ports/154580
Submitted by:	Stephen Montgomery-Smith <stephen at math.missouri.edu>
2011-02-10 16:28:42 +00:00
Martin Wilke
a415342446 The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.

This is fits.

The Octave-FITS package provides functions for reading, and writing FITS
(Flexible Image Transport System) files. The package supports uses the
libcfitsio library.

WWW: http://octave.sourceforge.net/

PR:		ports/153971
Submitted by:	Stephen Montgomery-Smith <stephen at math.missouri.edu>
Feature safe:	yes
2011-02-05 10:42:51 +00:00
Wen Heping
57f67727fe R-cran-coda is a R module for output analysis and diagnostics for
Markov Chain Monte Carlo simulations.

WWW: http://cran.case.edu/web/packages/coda/index.html

Feature safe:	yes
2011-01-17 07:57:07 +00:00
Max Brazhnikov
75dfa687bc Remove octave-forge-spanish, it has been replaced by octave-forge-es.
PR:		ports/148231
Submitted by:	Stephen Montgomery-Smith <stephen at missouri.edu>
Feature safe:	yes
2011-01-13 09:21:03 +00:00
Jeremy Messenger
00f2c843c5 The x11/libcapplet has been broken for over a year (will be two in June 2011)
and no one has any of interest to fix it. It's an ancient software and
is part of GNOME 1. It's time for us to get rid of some of GNOME 1 stuff as
the GNOME 3 is coming sometimes in 2011. Any ports that required libcappet
are removed and ports that have optional aren't remove.

PR:		ports/153355
Discussed with:	My team, FreeBSD GNOME Team
Tested by:	pointyhat-exp (thanks pav!)
2011-01-04 03:32:21 +00:00
Rene Ladan
b7d7206e33 Garbage-collect expired ports:
2010-12-30 databases/p5-sqlrelay: broken and upstream disapeared
2010-12-30 devel/php-dbg2: No upstream support
2010-12-30 dns/fourcdns: upstream has disapeared
2010-12-31 emulators/win4bsd: Development has ceased and distfile is no longer available
2010-12-31 french/mozilla-flp: www/seamonkey port is deprecated. Consider using the www/firefox-i18n.
2010-12-31 french/xtel: Minitel services will be discontinued at the end of 2010.
2010-12-30 ftp/ftpq: upstream has disapeared
2010-12-30 graphics/paintlib: does not compile with new tiff and no more maintained upstream
2010-12-30 graphics/g3dviewer: does not build with gcc 4.2, upstream disapeared
2010-12-30 lang/scriba: Does not compile with gcc 4.2+, looks like abandonware
2010-12-30 math/rascal: Broken on every arch since 2008, looks like an abandonware
2010-12-31 net-mgmt/nrg: Project has vanished. Use cacti instead.
2010-12-31 security/hostsentry: Project is dead.
2010-12-31 sysutils/kcube: Project has vanished
2010-12-31 www/cybercalendar: has been unmaintained since 2001 and is unusable with dates after 2010 (see ports/150974)
2010-12-31 www/flock: Flock 3 moves from Firefox to Chromium
2010-12-31 www/linux-flock: Flock 3 moves from Firefox to Chromium
2010-12-30 x11-clocks/xtu: Looks like abandonware

Leave java/tya in for now, as it has outstanding PRs.
2010-12-31 17:35:17 +00:00
Nicola Vitale
36d8a857f9 ParMGridGen-1.0 is a highly optimized serial and parallel library
for obtaining a sequence of successive coarse grids that are well suited
for geometric multigrid methods.
The quality of the elements of the coarse grids is optimized using a
multilevel framework.
The parallel library is based on MPI and is portable to
a wide range of architectures.

WWW: http://www.mgnet.org/mgnet-codes-parmgridgen.html

PR:		ports/152506
Submitted by:	Stas Timokhin <devel at stasyan.com>
2010-12-15 16:48:09 +00:00
Philip M. Gollucci
2431878e6b Provides support for big integer calculations. Not intended to be used
by other modules. Other modules which sport the same functions can
also be used to support Math::BigInt, like Math::BigInt::GMP or
Math::BigInt::Pari.

WWW:	http://search.cpan.org/dist/Math-BigInt-FastCalc/

PR:		ports/152635
Submitted by:	Gea-Suan Lin <gslin at gslin.org>
2010-12-07 04:10:42 +00:00
Rene Ladan
d441d95202 The basic geometry and math libraries used in ROS.
angles:
Provides a set of simple math utilities to work with angles. The utilities cover
simple things like normalizing an angle and conversion between degrees and
radians, but also functions to calculate things like the shortest angular
distance between two joinst space positions of your robot, with the joint motion
constrained by joint limits.

bullet:
Contains version 2.76 of the Bullet professional free 3D Game Multiphysics
Library. The Bullet library provided by this ROS package is slightly different
from the official Bullet release.

eigen:
This package contains version 2.0.15 of the Eigen C++ template library for
linear algebra.

KDL:
This package contains a recent version of the Kinematics and Dynamics Library
(KDL), distributed by the Orocos Project. For stability reasons, this package
is currently locked to revision 31715, but this revision will be updated on a
regular basis to the latest available KDL trunk.

tf:
tf is a package that lets the user keep track of multiple coordinate frames
over time. tf maintains the relationship between coordinate frames in a tree
structure buffered in time, and lets the user transform points, vectors, etc
between any two coordinate frames at any desired point in time.

WWW: http://www.ros.org/wiki/geometry
2010-11-24 16:06:52 +00:00
Philip M. Gollucci
8a89576841 This module provides a perl interface to the DCDFLIB. See the section
on DCDFLIB for more information.

Functions are available for 7 continuous distributions (Beta,
Chi-square, F, Gamma, Normal, Poisson and T-distribution) and for two
discrete distributions (Binomial and Negative Binomial). Optional
non-centrality parameters are available for the Chi-square, F and
T-distributions. Cumulative probabilities are available for all 9
distributions and quantile functions are available for the 7
continuous distributions.

WWW:	http://search.cpan.org/dist/Math-CDF/

PR:		ports/152204
Submitted by:	Gea-Suan Lin <gslin at gslin.org>
2010-11-16 03:04:20 +00:00
Wen Heping
5745b0e03d Another Python Graph Library is a simple, fast and easy to use graph library
with some machine learning features. The main features are as follows:

    * Directed, undirected and multigraphs designed under a hierarchical
class structure
    * Sparse and Dense graph structures using numpy and scipy for fast linear
algebra computations
    * Many operations on graphs such as subgraphs, search, Floyd-Warshall,
Dijkstras algorithm
    * Erdos-Renyi, Small-World and Albert-Barabasi random graphs
    * Write to Pajek, and simple CSV files
    * Some machine learning features - data preprocessing, kernels, PCA, KCCA,
wrappers for LibSVM, and some mlpy learning algorithms
    * Unit tested using the Python unittest framework

WWW:   http://packages.python.org/apgl/
2010-10-28 13:20:08 +00:00
Wen Heping
84c1524854 libtsnnls is a fast solver for least-squares problems in the
form Ax = b under the constraint that all entries in the
solution vector x are non-negative.

WWW: http://www.jasoncantarella.com/webpage/index.php?title=Tsnnls

PR:		ports/151519
Submitted by:	Tz-Huan Huang <tzhuan@gmail.com>
2010-10-19 11:00:55 +00:00
Jimmy Olgeni
29887f7508 Add JTransforms, an open source, multithreaded FFT library written
in pure Java.
2010-10-01 11:21:23 +00:00
Max Brazhnikov
7d2081dcb4 Connect giacxcas 2010-09-21 15:30:11 +00:00
Wen Heping
47bbadc41e R-psych provides a number of routines for personality, psychometrics and
experimental psychology. Functions are primarily for scale construction using
factor analysis, cluster analysis and reliability analysis, although others
provide basic descriptive statistics. Functions for simulating particular item
and test structures are included. Several functions serve as a useful front end
for structural equation modeling. Graphical displays of path diagrams, factor
analysis and structural equation models are created using basic graphics. Some
of the functions are written to support a book on psychometrics as well as
publications in personality research.

WWW:    http://cran.r-project.org/web/packages/psych/index.html

PR:		ports/150600
Submitted by:	Dan Rue <drue@therub.org>
2010-09-16 10:38:39 +00:00
Max Brazhnikov
84dcbd93ce Connect octave-forge-dataframe 2010-08-29 15:35:42 +00:00
Brendan Fabeny
6d50128666 Add levmar 2.5, a GPL-licensed library implementing the
Levenberg-Marquardt algorithm.

PR:		ports/146683
Submitted by:	Eijiro Shibusawa <ej-sib at ice.uec.ac.jp>
Approved by:	makc (co-mentor)
2010-08-25 06:42:48 +00:00
Brendan Fabeny
ec798d26fc Add x12arima 0.3, x-12-ARIMA seasonal adjustment program.
PR:		ports/148098
Submitted by:	jh at jameshoward.us
Approved by:	makc (co-mentor)
2010-08-21 16:04:45 +00:00
Jose Alonso Cardenas Marquez
639fe47eba - New port: math/fpc-gmp
Free Pascal interface to gmp library

PR:		146001
Submitted by:	Christopher Key <cjk32 at cam.ac.uk>
2010-08-16 18:07:49 +00:00
Wen Heping
714db4465a numexpr - Fast numerical array expression evaluator for Python and NumPy.
The numexpr package evaluates multiple-operator array expressions many times
faster than NumPy can. It accepts the expression as a string, analyzes it,
rewrites it more efficiently, and compiles it to faster Python code on the fly.
It's the next best thing to writing the expression in C and compiling it with
a specialized just-in-time (JIT) compiler, i.e. it does not require a compiler
at runtime.

Also, numexpr has support for the Intel VML (Vector Math Library) -- integrated
in Intel MKL (Math Kernel Library) --, allowing nice speed-ups when computing
transcendental functions (like trigonometrical, exponentials...) on top of
Intel-compatible platforms. This support also allows to use multiple cores in
your computations.

WWW: http://code.google.com/p/numexpr/

PR:		ports/148372
Submitted by:	Ju Pengfei <jupengfei@gmail.com>
Feature safe:	yes
2010-07-05 08:18:12 +00:00
Wen Heping
e1daee4b97 Algorithm::KMeans is a perl5 module for the clustering of numerical data
in multidimensional spaces. Since the module is entirely in Perl (in the
sense that it is not a Perl wrapper around a C library that actually does
the clustering), the code in the module can easily be modified to experiment
with several aspects of automatic clustering. For example, one can change
the criterion used to measure the "distance" between two data points, the
stopping condition for accepting final clusters, the criterion used for
measuring the quality of the clustering achieved, etc.

WWW: http://search.cpan.org/dist/Algorithm-KMeans

Feature safe:	yes
2010-07-01 04:16:41 +00:00
Sylvio Cesar Teixeira
d87784ce02 The octave-forge package is the result of the GNU Octave Repositry project, which is intended to be a central location for custom scripts, functions and extensions for GNU Octave, contains the source for all the functions plus build and install scripts.
This is parallel.

Parallel execution package for cluster computers. For parallel execution on a single machine see e.g. function parcellfun (author: Jaroslav Hajek) in package general.

WWW:	http://octave.sourceforge.net/

PR:		ports/147603
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu>
Feature safe:	yes
2010-06-29 12:14:10 +00:00
Sylvio Cesar Teixeira
e3006c29d4 The octave-forge package is the result of The GNU Octave Repositry Project, which is intended to be a central location for custom scripts, functions and extensions for GNU Octave, contains the source for all the functions plus build and install scripts.
This is gnuplot.

Scripts to save data in gnuplot-readable formats, spectify gnuplot commands that will be used to produce graphics, and call gnuplot. See help g_ez quickly produce the most common plots.

WWW:	http://octave.sourceforge.net/

PR:		ports/147602
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu>
Feature safe:	yes
2010-06-29 12:08:25 +00:00
Sylvio Cesar Teixeira
ad97a8683c The octave-forge package is the result of the GNU Octave Repositry project, which is intended to be a central location for custom scripts, funcitons and extensions for GNU Octave, contains the source for all the functions plus build and install scripts.
This is fenv.

On supported architectures, change the rounding mode of the floating point arithmetics (to nearest, up, down, to zero) or change the precision of the test the properties of the floating point arithmetics.

WWW:	http://octave.sourceforge.net/

PR:		ports/147601
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu>
Feature safe:	yes
2010-06-29 12:03:07 +00:00
Sylvio Cesar Teixeira
73565302ab The octave-forge package is the result of The GNU Octave Repositry Project, which is intended to be a central location for custom scripts, functions plus build and install scripts.
This is es.

Spanish package for the construction of native language translations of Octave funcitons.

WWW:	http://octave.sourceforge.net/

PR:		ports/147600
Submitted by:	Stephen Montgomey-Smith <stephen@missouri.edu>
Feature safe:	yes
2010-06-29 11:58:05 +00:00
Sylvio Cesar Teixeira
d0b4b366a5 The octave-forge package is the result of the GNU Octave Repositry Project, which is intended to be a central location for custom scripts, functions plus build and install scripts.
This is octproj.

This package allows to call functions of PROJ.4 library for cartographic projections transformations.

WWW:	http://octave.sourceforge.net/

PR:		ports/147517
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu>
Feature safe:	yes
2010-06-29 11:53:37 +00:00
Wen Heping
d40fb33f05 - Connect math/rpy2
Feature safe:	yes
2010-06-27 03:02:25 +00:00
Wesley Shields
a5691f37d9 This library is a C port of the implementation of Limited-memory
Broyden-Fletcher-Goldfarb-Shanno (L-BFGS) method written by Jorge Nocedal.
The original FORTRAN source code is available at:
http://www.ece.northwestern.edu/~nocedal/lbfgs.html

WWW:	http://www.chokkan.org/software/liblbfgs/

PR:		ports/147670
Submitted by:	Hung-Yi Chen <gaod@hychen.org>
Feature safe:	yes
2010-06-22 01:55:00 +00:00
Max Brazhnikov
eb464769c4 Connect octave-forge-actuarial
Feature safe:	yes
2010-06-19 21:49:01 +00:00
Kevin Lo
1c6777665b Initial import of p5-Math-RPN 1.09.
Math::RPN is a Perl extension for Reverse Polish Math Expression Evaluation
2010-06-01 05:50:11 +00:00
Pav Lucistnik
85c15ce165 - Rename libranlib to librandlib 2010-05-17 08:34:30 +00:00
Wen Heping
3afe5913a1 The module provides a method to calculate geographic distances
between coordinates in geodetic WGS84 format using the Haversine
formula.

It is similar to GIS::Distance, but without the extra bells and
whistles and without the additional dependencies. Same great taste,
less filling. It exists for those who cannot, or prefer not to
install Moose and its dependencies.

WWW:    http://search.cpan.org/dist/GIS-Distance-Lite/
2010-05-14 13:56:24 +00:00
Martin Wilke
5c51d5a546 libranlip is a C++ library created by G. Beliakin, which generates random
variates with arbitrary Lipschitz-continuous densities via the acceptance /
rejection method. The density should have a dimension of no more than about
five. The user needs to supply the density function using a simple syntax, and
then call the methods of construction and generation provided in libranlip.

WWW: http://www.deakin.edu.au/~gleb/ranlip.html

PR:		ports/143624
Submitted by:	bf <bf1783 at gmail.com>
2010-05-09 08:26:50 +00:00