Commit graph

12 commits

Author SHA1 Message Date
Gerald Pfeifer
1cd277bdce Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
2014-03-10 20:55:20 +00:00
Gerald Pfeifer
3be3e90f93 Update to libmpc version 1.0.1 which brings the following fixes:
- Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)
2013-10-26 00:52:33 +00:00
Baptiste Daroussin
7055ff02f1 Add NO_STAGE all over the place in preparation for the staging support (cat: biology) 2013-09-20 15:55:44 +00:00
Wen Heping
27c347dbdd - Update to 1.5.3
- Trim Makefile headers
2012-10-08 03:17:02 +00:00
Steve Wills
63d09c9c9b - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or
RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
  about for a while.

PR:		ports/168208
Approved by:	portmgr (miwi)
2012-06-10 18:42:48 +00:00
Wen Heping
ad07e6148a - Update to 1.5.1 2011-08-11 11:37:18 +00:00
Nicola Vitale
c8a6af0499 - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy
(This port doesn't yet support SQLAlchemy 0.7.X)
- Bump PORTREVISION
2011-06-25 07:21:20 +00:00
Wen Heping
dbe1b3c46b - Update to 1.5.0 2010-11-10 08:52:26 +00:00
Wen Heping
e7bd8df79f - Update to 1.4.1 2010-06-01 06:57:30 +00:00
Wen Heping
eb83a3ad9d - Update to 1.4
- Update my mail address to FreeBSD
2009-12-17 06:51:53 +00:00
Dmitry Marakasov
c926af277e - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
Martin Wilke
42c9c3189b PyCogent is a software library for genomic biology. It is a fully integrated
and thoroughly tested framework for: controlling third-party applications;
devising workflows; querying databases; conducting novel probabilistic
analyses of biological sequence evolution; and generating publication quality
graphics. It is distinguished by many unique built-in capabilities (such as
true codon alignment) and the frequent addition of entirely new methods for
the analysis of genomic data.

WWW:	http://pycogent.sourceforge.net/

PR:		ports/135863
Submitted by:	Wen Heping <wenheping at gmail.com>
2009-06-22 12:46:56 +00:00