Commit graph

17 commits

Author SHA1 Message Date
David Naylor
67a399008e Update math/R-cran-gss to 2.1-4.
ChangeLog:
 * R: Along with a bug fix, edited utility functions for the
      nbinomial family in the gssanova suite, eliminating unnecessary
      subtractions to preserve numerical precision.
2014-12-16 11:09:36 +00:00
Gerald Pfeifer
15945f8122 Update the default version of GCC in the Ports Collection from GCC 4.7.4
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
2014-09-10 20:50:31 +00:00
David Naylor
ac5a60c57c Update math/R-cran-gss to 2.1-3.
ChangeLog:
 * R: Edited utility functions for the binomial family in the
        gssanova suite, eliminating unnecessary subtractions to preserve
        numerical precision.
2014-07-27 19:46:52 +00:00
David Naylor
5242bccb1b Update math/R-cran-gss to 2.1-2.
ChangeLog:
 * inst: created the directory and added CITATION.
 * man: Updated references
2014-06-16 09:44:08 +00:00
David Naylor
074c244cdb Update math/R-cran-gss to 2.1-0.
ChangeLog:
* R:
  i) Tuned Newton iteration algorithms in ngreg and ngreg.proj.
  ii) Bug fixes in routines involving univariate minimization via
        nlm0.
  iii) Minor changes in makedata.x's.
2014-05-30 17:29:39 +00:00
Gerald Pfeifer
1cd277bdce Update the default version of GCC used in the Ports Collection from
GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as
well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)
2014-03-10 20:55:20 +00:00
David Naylor
e288e58754 Convert Mk/bsd.cran.mk to the Uses framework.
PR:		ports/184699
Reviewed by:	bapt
Approved by:	portmgr (bdrewery), wen (maintainer, timeout > 2 weeks)
2013-12-28 10:28:40 +00:00
David Naylor
69e5b7db74 Update math/R-cran-gss to 2.1-0.
ChangeLog:
 * R: i) Changed time domain specification in sshzd/sshzd1.
      ii) Removed from sshzd1 the option of external rho.
  * man: Minor edit in sshzd.Rd.
2013-12-10 08:13:38 +00:00
David Naylor
f62456a872 Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).
Since this patch converts all affected ports, bsd.cran.mk no longer supports
NO_STAGE and errors out if NO_STAGE is set.

Exp-run:	ports/184216
Reviewed by:	bdrewery
Approved by:	portsmgr, wen
2013-11-27 18:56:43 +00:00
David Naylor
7a823c2b71 Update math/R-cran-gss to 2.0.16.
ChangeLog:
* R: i) Bug fix in survexp.sshzd.  ii) Modified default values of
        qdsz.depth in ssden.
* man: i) Updated references.  ii) Added note in ssden.Rd.
2013-11-18 18:01:25 +00:00
Brendan Fabeny
1b81841d48 Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;
adjust dependent ports

Reviewed by:	pfg, thierry, tota
2013-11-13 08:19:34 +00:00
David Naylor
4dc10b49d0 Update math/R-cran-gss to 2.0-15.
ChangeLog:

 * R: Bug fixes in summary.gssanova, summary.ssanova, and
      summary.ssanova9.
2013-10-27 18:56:52 +00:00
Gerald Pfeifer
3be3e90f93 Update to libmpc version 1.0.1 which brings the following fixes:
- Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)
2013-10-26 00:52:33 +00:00
Baptiste Daroussin
ce5e457020 Add NO_STAGE all over the place in preparation for the staging support (cat: math) 2013-09-20 20:55:04 +00:00
Brendan Fabeny
e80e131996 Update math/R to 3.0.1-patched, and adjust dependent ports;
synchronize math/rpy with upstream repository

Reviewed by:	wen
Approved by:	wen, tota
2013-05-28 15:15:05 +00:00
David Naylor
606c643741 Update math/R-cran-gss to 2.0-14.
ChangeLog:
        * R: Bug fixes in ssden1, sscden, sscden1 suites.

Approved by:	eadler.bdrewery (mentors, implicit)
2013-05-18 13:57:41 +00:00
David Naylor
6bc062cbf5 Add new port math/R-cran-gss (2.0-13).
There is an existing port (finance/gss) with possible distfile conflict however
upstream is not actively maintained and CRAN packages have a slightly different
naming scheme making a future distfiles conflict unlikely.

Approved by:	eadler,bdrewery (mentors, implicit)
2013-05-05 19:52:27 +00:00