Implementations of functions which have been introduced in R since
version 3.0.0. The backports are conditionally exported which results
in R resolving the function names to the version shipped with R (if
available) and uses the implemented backports as fallback. This way
package developers can make use of the new functions without worrying
about the minimum required R version.
WWW: https://cran.r-project.org/web/packages/backports/
Math::BigInt is not very good suited to work with small (read: typical less than
10 digits) numbers, since it has a quite high per-operation overhead and is thus
much slower than normal Perl for operations.
But for some applications, you want fast speed for small numbers without the
risk of overflowing. This is were Math::BigInt::Lite comes into play.
Math::BigInt::Lite objects should behave in every way like Math::BigInt objects,
that is apart from the different label, you should not be able to tell the
difference. Since Math::BigInt::Lite is designed with speed in mind, there are
certain limitations build-in. In praxis, however, you will not feel them,
because everytime something gets to big to pass as Lite (literally), it will
upgrade the objects and operation in question to Math::BigInt.
WWW: http://search.cpan.org/dist/Math-BigInt-Lite/
2016-11-01 math/octave-forge-octgpr: Broken for more than 6 months
2016-11-01 math/octave-forge-spline-gcvspl: Broken for more than 6 months
2016-11-01 www/pear-Services_SharedBook: Broken for more than 6 months
2016-11-01 devel/py-snackwich: Depends on broken and expiring devel/py-snack
2016-11-01 math/octave-forge-ad: Broken for more than 6 months
2016-11-01 math/octave-forge-xraylib: Broken for more than 6 months
2016-11-01 x11-toolkits/py-traitsbackendwx: Broken for more than 6 months
2016-11-01 x11-toolkits/py-traitsgui: Depends on broken and expiring x11-toolkits/py-traitsbackendwx
2016-11-01 security/lsh: Broken for more than 6 months
2016-11-01 devel/py-snack: Broken for more than 6 months
2016-11-01 security/massh: Broken for more than 6 months
2016-11-01 www/hydra: Broken for more than 6 months
2016-11-01 math/py-pyfst: Broken for more than 6 months
2016-11-01 archivers/ruby-zip: Broken will all supported versions of Ruby
2016-11-01 devel/ruby-langscan: Broken will all supported versions of Ruby
https://gitlab.com/rnger/amath/
Features a case sensitive command line interface, internal IEEE 754
calculations with 15 significant digits, calculations with real and complex
numbers, variables and user defined functions, logarithmic and exponential
functions, trigonometric and hyperbolic function and selected mathematical
constants and rounding functions.
PR: 209905
Submitted by: cs@innolan.dk (maintainer)
Reviewed by: mat
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8386
- The libR option in math/R has been turned on by default since 2016-06-26.
- A request for comments regarding the removal, posted to ports@ on
2016-07-16, did not result in any requests for it to remain in the tree.
- After a restructuring of math/R, math/libR has been marked BROKEN since
2016-07-09 without any complaints.
- No ports depend on it.
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D8260
Based on: Gentoo (1.11.0 ebuild)
Tested on: graphics/openmvg from @outpaddling's repo (build on 10.3 amd64)
Ceres Solver is an open source C++ library for modeling and solving
large, complicated optimization problems. It is a feature rich, mature
and performant library which has been used in production at Google
since 2010. Ceres Solver can solve two kinds of problems.
1. Non-linear Least Squares problems with bounds constraints.
2. General unconstrained optimization problems.
http://ceres-solver.org/
Methods for calculating (usually) accurate numerical first and
second order derivatives. Accurate calculations are done using
'Richardson"s' extrapolation or, when applicable, a complex step
derivative is available. A simple difference method is also provided.
Simple difference is (usually) less accurate but is much quicker
than 'Richardson"s' extrapolation and provides a useful cross-check.
Methods are provided for real scalar and vector valued functions.
WWW: https://cran.r-project.org/web/packages/numDeriv/
2016-09-30 math/why3-spark: Only useful for deprecated lang/spark
2016-09-30 lang/spark: Broken for more than 6 months
2016-09-30 math/alt-ergo-spark: Only useful for deprecate lang/spark
2016-09-30 security/nessus-libnasl: Abandoned, consider using OpenVAS
2016-09-30 security/nessus: Abandoned, consider using OpenVAS
2016-09-30 security/nessus-libraries: Abandoned, consider using OpenVAS
2016-09-30 security/nessus-plugins: Abandoned, consider using OpenVAS
and expected value function for the truncated normal distribution
with mean equal to 'mean' and standard deviation equal to 'sd'.
WWW: http://cran.r-project.org/web/packages/truncnorm/
PR: 213091
Submitted by: pfg@
influenceR: Software Tools to Quantify Structural Importance of
Nodes in a Network
Provides functionality to compute various node centrality measures
on networks. Included are functions to compute betweenness centrality
(by utilizing Madduri and Bader's SNAP library), implementations
of Burt's constraint and effective network size (ENS) metrics,
Borgatti's algorithm to identify key players, and Valente's bridging
metric. On Unix systems, the betweenness, Key Players, and bridging
implementations are parallelized with OpenMP, which may run faster
on systems which have OpenMP configured.
WWW: https://cran.r-project.org/web/packages/influenceR/
Simulates continuous distributions of random vectors using Markov
chain Monte Carlo (MCMC). Users specify the distribution by an R
function that evaluates the log unnormalized density. Algorithms
are random walk Metropolis algorithm (function metrop), simulated
tempering (function temper), and morphometric random walk Metropolis
(Johnson and Geyer, Annals of Statistics, 2012, function morph.metrop),
which achieves geometric ergodicity by change of variable.
WWW: https://cran.r-project.org/web/packages/mcmc/
Cadabra is a symbolic computer algebra system (CAS) designed
specifically for the solution of problems encountered in field
theory. It has extensive functionality for tensor computer algebra,
tensor polynomial simplification including multi-term symmetries,
fermions and anti-commuting variables, Clifford algebras and Fierz
transformations, component computations, implicit coordinate
dependence, multiple index types and many more. The input format
is a subset of TeX.
WWW: http://cadabra.science/
PR: 210476
Submitted by: Yuri Victorovich <yuri@rawbw.com>
PR: 210595
Submitted by: yuri@rawbw.com
PySparse extends the Python interpreter by a set of sparse matrix
types holding double precision values. PySparse also includes modules
that implement:
- iterative methods for solving linear systems of equations
- a set of standard preconditioners
- an interface to a direct solver for sparse linear systems of
equations (SuperLU)
- a Jacobi-Davidson eigenvalue solver for the symmetric, generalised
matrix eigenvalue problem (JDSYM)
https://github.com/PythonOptimizers/pysparse
2016-07-04 security/openpgpsdk: Broken for more than 6 months
2016-07-04 security/radiusniff: Broken for more than 6 months
2016-07-04 security/pear-Auth_OpenID: Broken for more than 6 months
2016-07-04 security/sshit: Broken for more than 6 months
2016-07-04 security/ifd-slb_rf60: Broken for more than 6 months
2016-07-04 security/rainbowcrack: Broken for more than 6 months
2016-07-04 security/vlog: Broken for more than 6 months
2016-07-04 security/cryptstring: Broken for more than 6 months
2016-07-04 x11/libdnd: Broken for more than 6 months
2016-07-04 x11/xlupe: Broken for more than 6 months
2016-07-04 x11/xco: Broken for more than 6 months
2016-07-04 x11/xclick: Broken for more than 6 months
2016-07-04 devel/ocfpcsc: Broken for more than 6 months
2016-07-04 devel/dits: Broken for more than 6 months
2016-07-04 devel/ruby-cache: Broken for more than 6 months
2016-07-04 devel/rapidsvn: Broken for more than 6 months
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2016-07-04 devel/py-EnthoughtBase: Broken for more than 6 months
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2016-07-04 devel/ruby-event-loop: Broken for more than 6 months
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2016-07-04 devel/dasm: Broken for more than 6 months
2016-07-04 devel/libopendaap: Broken for more than 6 months
2016-07-04 devel/cl-uffi-sbcl: Depends on expiring devel/cl-uffi
2016-07-04 devel/cvs2p4: Broken for more than 6 months
2016-07-04 devel/bufferpool: Broken for more than 6 months
2016-07-04 devel/ifd-test: Broken for more than 6 months
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2016-07-04 devel/uclmmbase: Broken for more than 6 months
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2016-07-04 devel/oniguruma: Broken for more than 6 months
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2016-07-04 devel/c4: Broken for more than 6 months
2016-07-04 devel/memcheck: Broken for more than 6 months
2016-07-04 devel/liblcfg: Broken for more than 6 months
2016-07-04 devel/omake: Broken for more than 6 months
2016-07-04 devel/svndelta: Broken for more than 6 months
2016-07-04 devel/papp: Broken for more than 6 months
2016-07-04 devel/mk: Broken for more than 6 months
2016-07-04 devel/avltree: Broken for more than 6 months
2016-07-04 devel/cbind: Broken for more than 6 months
2016-07-04 devel/tclgetopts: Broken for more than 6 months
2016-07-04 devel/antlrworks: Broken for more than 6 months
2016-07-04 devel/acme: Broken for more than 6 months
2016-07-04 devel/libopensync022: Broken for more than 6 months
2016-07-04 archivers/epkg: Broken for more than 6 months
2016-07-04 print/enscriptfonts: Broken for more than 6 months
2016-07-04 print/mup: Broken for more than 6 months
2016-07-04 lang/lua-mode.el: Broken for more than 6 months
2016-07-04 lang/s9fes: Broken for more than 6 months
2016-07-04 lang/alisp: Broken for more than 6 months
2016-07-04 lang/intel2gas: Broken for more than 6 months
2016-07-04 lang/stalin: Broken for more than 6 months
2016-07-04 french/eric4: Depends on expiring devel/eric4
2016-07-04 textproc/exslt: Broken for more than 6 months
2016-07-04 textproc/xt: Broken for more than 6 months
2016-07-04 textproc/ssddiff: Broken for more than 6 months
2016-07-04 textproc/xslint: Broken for more than 6 months
2016-07-04 textproc/cbedic: Broken for more than 6 months
2016-07-04 textproc/tralics: Broken for more than 6 months
2016-07-04 textproc/docbookide.el: Broken for more than 6 months
2016-07-04 textproc/glpi-plugins-AdditionalReports: Broken for more than 6 months
2016-07-04 textproc/tdhkit: Broken for more than 6 months
2016-07-04 textproc/p5-Groonga-API: Broken for more than 6 months
2016-07-04 textproc/glpi-plugins-DataInjection: Broken for more than 6 months
2016-07-04 dns/ldnsm: Broken for more than 6 months
2016-07-04 japanese/guesswork-classic: Broken for more than 6 months
2016-07-04 japanese/texinfo: Broken for more than 6 months
2016-07-04 japanese/jyuroku: Broken for more than 6 months
2016-07-04 japanese/mtools: Broken for more than 6 months
2016-07-04 palm/pdbar: Broken for more than 6 months
2016-07-04 graphics/gplot: Broken for more than 6 months
2016-07-04 graphics/white_dune: Broken for more than 6 months
2016-07-04 graphics/whirlgif: Broken for more than 6 months
2016-07-04 graphics/libaux: Broken for more than 6 months
2016-07-04 graphics/import-pictures: Broken for more than 6 months
2016-07-04 math/xgobi: Broken for more than 6 months
2016-07-04 math/fricas: Broken for more than 6 months
2016-07-04 math/dcdflib: Broken for more than 6 months
2016-07-04 math/libneural: Broken for more than 6 months
2016-07-04 math/open-axiom: Broken for more than 6 months
2016-07-04 irc/nefarious: Broken for more than 6 months
2016-07-04 irc/slirc: Broken for more than 6 months
2016-07-04 irc/ratbox-respond: Broken for more than 6 months
2016-07-04 irc/qwebirc: Broken for more than 6 months
2016-07-04 biology/platon: Broken for more than 6 months
2016-07-04 news/slnr: Broken for more than 6 months
2016-07-04 science/jmol: Broken for more than 6 months
2016-07-04 net/nstxd: Broken for more than 6 months
2016-07-04 net/sprinkle: Broken for more than 6 months
2016-07-04 editors/ssam: Broken for more than 6 months
2016-07-04 editors/fb: Broken for more than 6 months
2016-07-04 misc/quotes: Broken for more than 6 months
2016-07-04 misc/boxquote.el: Broken for more than 6 months
2016-07-04 misc/pypanda: Broken for more than 6 months
2016-07-04 misc/cuecat: Broken for more than 6 months
2016-07-04 deskutils/displaycalibrator: Broken for more than 6 months
2016-07-04 german/eric4: Depends on expiring devel/eric4
2016-07-04 multimedia/vic: Depends on expiring devel/uclmmbase
2016-07-04 multimedia/ggrab: Broken for more than 6 months
2016-07-04 emulators/dynamips: Broken for more than 6 months
2016-07-04 emulators/dynamips-devel: Broken for more than 6 months
2016-07-04 emulators/sim6811: Broken for more than 6 months
2016-07-04 emulators/minivmac: Broken for more than 6 months
2016-07-04 cad/qcad-partslib: Broken for more than 6 months
2016-07-04 comms/dump1090_mr: Broken for more than 6 months
2016-07-04 x11-fm/asfiles: Depends on expiring x11/libdnd
2016-07-04 x11-fonts/fonts-te: Broken for more than 6 months
2016-07-04 sysutils/rsyncmanager: Broken for more than 6 months
2016-07-04 sysutils/jfbterm: Broken for more than 6 months
2016-07-04 sysutils/daedalus: Broken for more than 6 months
2016-07-04 sysutils/pcfclock: Broken for more than 6 months
2016-07-04 sysutils/vlogger: Broken for more than 6 months
2016-07-04 sysutils/bontmia: Broken for more than 6 months
2016-07-04 mail/pop3gwd: Broken for more than 6 months
2016-07-04 mail/mailtray: Broken for more than 6 months
2016-07-04 mail/pflogstats: Broken for more than 6 months
2016-07-04 mail/exact: Broken for more than 6 months
2016-07-04 mail/wmpop3: Broken for more than 6 months
2016-07-04 mail/qmail-conf: Broken for more than 6 months
2016-07-04 mail/gld: Broken for more than 6 months
2016-07-04 mail/dsbl-testers: Broken for more than 6 months
2016-07-04 mail/vqregister: Broken for more than 6 months
2016-07-04 mail/atmail: Broken for more than 6 months
2016-07-04 mail/ml: Broken for more than 6 months
2016-07-04 net-im/icb: Broken for more than 6 months
2016-07-04 net-im/cicquin: Broken for more than 6 months
2016-07-04 net-im/pidgin-manualsize: Broken for more than 6 months
2016-07-04 net-im/pidgin-rhythmbox: Broken for more than 6 months
2016-07-04 russian/eric4: Depends on expiring devel/eric4
2016-07-04 russian/fortune-bashorgru: Broken for more than 6 months
2016-07-04 www/xpi-clearfields: Broken for more than 6 months
2016-07-04 www/pecl-varnish: Broken for more than 6 months
2016-07-04 www/py-requests-oauth-hook: Broken for more than 6 months
2016-07-04 www/hudson: Broken for more than 6 months
2016-07-04 www/xpi-mldonkey: Broken for more than 6 months
2016-07-04 www/xpi-cookiesafe: Broken for more than 6 months
2016-07-04 www/trac-mastertickets: Broken for more than 6 months
2016-07-04 www/dotclear: Broken for more than 6 months
2016-07-04 www/ruby-wgettsv: Broken for more than 6 months
2016-07-04 www/wwwstat: Broken for more than 6 months
2016-07-04 www/xpi-prism: Broken for more than 6 months
2016-07-04 www/xpi-fasterfox: Broken for more than 6 months
2016-07-04 www/siteframe: Broken for more than 6 months
2016-07-04 www/py-urljr: Broken for more than 6 months
2016-07-04 www/reviewboard: Broken for more than 6 months
2016-07-04 www/xpi-tabletools: Broken for more than 6 months
2016-07-04 www/wikindx: Broken for more than 6 months
2016-07-04 www/typolight: Broken for more than 6 months
2016-07-04 www/varnish-libvmod-header: Broken for more than 6 months
2016-07-04 www/xpi-gbrain: Broken for more than 6 months
2016-07-04 www/trac-robotstxt: Broken for more than 6 months
2016-07-04 www/simplog: Broken for more than 6 months
2016-07-04 www/chtml: Broken for more than 6 months
2016-07-04 databases/postgresql_autodoc: Broken for more than 6 months
2016-07-04 databases/oracle_odbc_driver: Broken for more than 6 months
2016-07-04 databases/mysql-xql: Broken for more than 6 months
2016-07-04 databases/mysql-udf-sys: Broken for more than 6 months
2016-07-04 games/lucidlife: Broken for more than 6 months
2016-07-04 games/gma: Broken for more than 6 months
2016-07-04 games/smiley: Broken for more than 6 months
2016-07-04 games/noegnud-littlehack: Broken for more than 6 months
2016-07-04 games/sdlquake2: Broken for more than 6 months
2016-07-04 games/daimonin: Depends on expiring games/daimonin-music
2016-07-04 games/noegnud-nethack: Broken for more than 6 months
2016-07-04 games/xbomber: Broken for more than 6 months
2016-07-04 games/xwelltris: Broken for more than 6 months
2016-07-04 games/ftjava: Broken for more than 6 months
2016-07-04 games/daimonin-music: Broken for more than 6 months
2016-07-04 games/gno3dtet: Broken for more than 6 months
2016-07-04 games/qtv: Broken for more than 6 months
2016-07-04 games/xwordpy: Broken for more than 6 months
2016-07-04 games/netris: Broken for more than 6 months
2016-07-04 games/rt2-demo: Broken for more than 6 months
2016-07-04 games/noegnud-addons: Broken for more than 6 months
2016-07-04 games/noegnud-nethack-deet: Broken for more than 6 months
2016-07-04 games/live-f1: Broken for more than 6 months
2016-07-04 games/xonix: Broken for more than 6 months
2016-07-04 games/fgkicker: Broken for more than 6 months
2016-07-04 games/tank: Depends on expiring graphics/libaux
2016-07-04 games/linux-nwserver: Broken for more than 6 months
2016-07-04 games/quake2-zaero: Broken for more than 6 months
2016-07-04 games/pyching: Broken for more than 6 months
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2016-07-04 games/fxsudoku: Broken for more than 6 months
2016-07-04 games/sudoku: Broken for more than 6 months
2016-07-04 games/kmancala: Broken for more than 6 months
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2016-07-04 games/pysycache-themes: Broken for more than 6 months
2016-07-04 games/nibbles: Broken for more than 6 months
2016-07-04 games/hlstatsx: Broken for more than 6 months
2016-07-04 audio/streamtuner: Broken for more than 6 months
2016-07-04 audio/mangler: Broken for more than 6 months
2016-07-04 audio/hawkvoice: Broken for more than 6 months
2016-07-04 audio/alac: Broken for more than 6 months
2016-07-04 x11-wm/e-module-mpdule: Broken for more than 6 months
2016-07-04 x11-wm/e-module-tclock: Broken for more than 6 months
2016-07-04 x11-wm/musca: Broken for more than 6 months
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2016-07-04 x11-wm/e-module-net: Broken for more than 6 months
2016-07-04 x11-wm/e-module-penguins: Broken for more than 6 months
2016-07-04 ftp/fget: Broken for more than 6 months
2016-07-04 net-mgmt/netmond: Broken for more than 6 months
2016-07-04 net-mgmt/ipfm: Broken for more than 6 months
In addition to supporting GMP or MPIR for multiple-precision integer and
rational arithmetic, gmpy2 adds support for the MPFR (correctly rounded real
floating-point arithmetic) and MPC (correctly rounded complex floating-point
arithmetic) libraries.
WWW: https://pypi.python.org/pypi/gmpy2
WWW: https://github.com/aleaxit/gmpy/releases
PR: 210127
Submitted by: yuri@rawbw.com
Sets can be created from and displayed as integer spans such as
1-3,14,29,92-97 rather than exhaustive member listings.
WWW: https://pypi.python.org/pypi/intspan/
Arithmetic (via S4 classes and methods) for arbitrary precision
floating point numbers, including transcendental ("special")
functions. To this end, Rmpfr interfaces to the LGPL'ed MPFR (Multiple
Precision Floating-Point Reliable) Library which itself is based
on the GMP (GNU Multiple Precision) Library.
WWW: https://cran.r-project.org/web/packages/Rmpfr/
Submitted by: Jukka A. Ukkonen <jau_AT_iki_DOT_fi> (via private e-mail)
Multiple Precision Arithmetic (big integers and rationals, prime
number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
WWW: https://cran.r-project.org/web/packages/gmp/
cumulative link models, Cox models, loglinear models, and general maximum
pseudolikelihood estimation for multistage stratified, cluster-sampled,
unequally weighted survey samples. Variances by Taylor series linearisation
or replicate weights. Post-stratification, calibration, and raking. Two-phase
subsampling designs. Graphics. PPS sampling without replacement. Principal
components, factor analysis.
WWW: http://r-survey.r-forge.r-project.org/survey/
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is zeromq.
ZeroMQ bindings for GNU Octave.
This program demonstrates the working principles of some 20 sorting
algorithms and is very easy to use. Select the algorithm, the speed
of the visualisation and whether you want to get sound output (that
reflects the values being moved and is characteristic for each kind
of algorithm).
Approved by: antoine (mentor)
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This port uses math/librsb, which is quite difficult to install. Therefore
this port will not be installed as part of the math/octave-forge meta-port.
2015-12-30 www/ocsigen: Broken for more than 6 months
2015-12-30 devel/monodevelop-database: Broken for more than 6 months
2015-12-30 lang/cduce: Broken for more than 6 months
2015-12-30 science/hdf-java: Broken for more than 6 months
2015-12-30 math/p5-Math-Geometry-Planar-GPC-Polygon: Broken for more than 6 months
2015-12-30 www/eliom: Depends on broken and expiring www/ocsigen
2015-12-30 audio/py-fastaudio: Broken for more than 6 months
2015-12-30 devel/jgoodies-common: Broken for more than 6 months
2015-12-30 graphics/pinta: Broken for more than 6 months
2015-12-30 games/kanatest: Broken for more than 6 months
2015-12-30 editors/bless: Broken for more than 6 months
2015-12-30 security/burpsuite: Broken for more than 6 months
control groups with similar covariate distributions - can be used
to match exactly on covariates, to match on propensity scores, or
perform a variety of other matching procedures.
WWW: http://gking.harvard.edu/matchit
mean, scale, and correlation structures, through mean link,
scale link, and correlation link. Can also handle clustered
categorical responses.
WWW: https://cran.r-project.org/web/packages/geepack/
declare the pre and post conditions that you code should satisfy,
while also producing friendly error messages so that your users
know what they've done wrong.
WWW: https://cran.r-project.org/web/packages/assertthat/
(such as a survey), from a time series (like variables collected for
each year in a country), or from a time-series-cross-sectional data set
(such as collected by years for each of several countries).
WWW: http://gking.harvard.edu/amelia
There are two reasons to rename this port.
1) Upstream never liked it and requested -spark be the suffix instead
2) An ongoing attempt to fix lang/spark may result in a number of slave
ports with a -spark suffix, so this keeps up consistency as all of
these ports only exist to support that port.
optimization, and related tools. It includes a unified way to
call different optimizers, and classes and methods to handle the
results from the ML viewpoint. It also includes a number of
convenience tools for testing and developing your own models.
WWW: http://www.maxlik.org/
