This patch brings EMBOSS up to date with the current version.
i. The patches included in files/ are bugfixes for files in
EMBOSS-3.0.0 that appeared after the release. They are
documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README
This is just 'for the record' so that we remember to remove these
patches in the next update.
ii. EMBOSS is now installed by default in LOCALBASE/emboss
This is to avoid CONFLICTS with other ports that install files
with the same names. Installing EMBOSS to another PREFIX is also
possible.
iii. now EMBASSY and EMBOSS both store their distfiles in the same
DIST_SUBDIR
iv. use built-in PKGMESSAGE and SUB_FILES instead of doing it the old
(manual) way
For EMBASSY:
This update brings embassy in sync with the update of EMBOSS to 3.0.0.
Things that changed from previous version of the port:
i. embassy now installs by default in $LOCALBASE/emboss (the
new default PREFIX for emboss as well).
ii. changed DIST_SUBDIR so that all the distfiles are put together with
emboss. This makes sense(TM)
iii. incorporated new EMBASSY apps (this accounts for the changes in
OPTIONS and pkg-plist)
iv. removed obsoleted patches
Finally, I included a sample text that could go in UPDATING.
PR: 93053
Submitted by: Fernan Aguero <fernan (at) iib.unsam.edu.ar> (maintainer)
in bsd.autotools.mk essentially makes this a no-op given that all the
old variables set a USE_AUTOTOOLS_COMPAT variable, which is parsed in
exactly the same way as USE_AUTOTOOLS itself.
Moreover, USE_AUTOTOOLS has already been extensively tested by the GNOME
team -- all GNOME 2.12.x ports use it.
Preliminary documentation can be found at:
http://people.FreeBSD.org/~ade/autotools.txt
which is in the process of being SGMLized before introduction into the
Porters Handbook.
Light blue touch-paper. Run.
o Do not install everything except headers and libraries
(to avoid conflicting with graphics/gd2)
o Fix dependency on new libgd1(for many ports).
PR: ports/54100
Submitted by: Ports Fury
- Update included EMBASSY package EMNU
- Fix a long-standing bug in Makefile that would preclude PKGMESSAGE from
being generated properly
- Consider this an interim update merely to track the latest version - more
work is required to activate the newly included "Jemboss" Java GUI
interface
- "EMBASSY" applications are third party tools which have been adapted to
function as part of EMBOSS, but which are not included with the base EMBOSS
distribution for licensing or other reasons. This new version of the
EMBOSS port now contains the three current EMBASSY applications as well,
and during installation the user is presented with a dialog(1) menu to
PR: 22818
Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
- "EMBASSY" applications are third party tools which have been adapted to
function as part of EMBOSS, but which are not included with the base EMBOSS
distribution for licensing or other reasons. This new version of the
EMBOSS port now contains the three current EMBASSY applications as well,
and during installation the user is presented with a dialog(1) menu to
choose which of these should be isntalled.
PR: 22818
Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
