- Remove build dependency on GNU m4.
- Sort knobs.
- Remove unneeded use of REINPLACE.
- Fix plist for WITH_GNOME case and mark BROKEN for WITH_PYTHON
PR: 130168
Submitted by: "Pedro F. Giffuni" <giffunip at tutopia dot com> (maintainer)
- Pass maintainer along to new maintainer of math/R
PR: ports/130280
Submitted by: "Pedro F. Giffuni" <giffunip@tutopia.com>
Approved by: old maintainer (private mail)
See http://library.gnome.org/misc/release-notes/2.24/ for the general
release notes. On the FreeBSD front, this release introduces Fuse support
in HAL, adds multi-CPU support to libgtop, WebKit updates, and fixes some
long-standing seahorse and gnome-keyring bugs. The documentation updates
to the website are forthcoming.
This release features commits by adamw, ahze, kwm, mezz, and myself. It would
not have been possible without are contributors and testers:
Alexander Loginov
Craig Butler [1]
Dmitry Marakasov [6]
Eric L. Chen
Joseph S. Atkinson
Kris Moore
Lapo Luchini [7]
Nikos Ntarmos
Pawel Worach
Romain Tartiere
TAOKA Fumiyoshi [3]
Yasuda Keisuke
Zyl
aZ [4]
bf [2] [5]
Florent Thoumie
Peter Wemm
pluknet
PR: 125857 [1]
126993 [2]
130031 [3]
127399 [4]
127661 [5]
124302 [6]
129570 [7]
129936
123790
- Make explicit that the python bindings are not building.
- For now keep using the autoconf interface, we have sorted out the issues
there but we will have to move to CMake soon anyways.
- This is the latest stable version, and apparently the last one to support
the autoconf tools. It includes C++ and Octave updates.
PR: ports/130097
Submitted by: "Pedro F. Giffuni" <giffunip@tutopia.com>
Carlo (MCMC), is an increasingly relevant approach to
statistical estimation. However, few statistical software
packages implement MCMC samplers, and they are non-trivial
to code by hand. pymc is a python package that implements
the Metropolis-Hastings algorithm as a python class, and is
extremely flexible and applicable to a large suite of problems.
pymc includes methods for summarizing output, plotting,
goodness-of-fit and convergence diagnostics.
WWW: http://pypi.python.org/pypi/pymc/
PR: ports/129567
Submitted by: Wen Heping <wenheping at gmail.com>
offering a collection of utilities for the empirical statistical testing
of uniform random number generators.
The library implements several types of random number generators in generic
form, as well as many specific generators proposed in the literature or
found in widely-used software. It provides general implementations of the
classical statistical tests for random number generators, as well as several
others proposed in the literature, and some original ones. These tests can
be applied to the generators predefined in the library and to user-defined
generators. Specific tests suites for either sequences of uniform random
numbers in [0,1] or bit sequences are also available. Basic tools for
plotting vectors of points produced by generators are provided as well.
Additional software permits one to perform systematic studies of the
interaction between a specific test and the structure of the point sets
produced by a given family of random number generators. That is, for a given
kind of test and a given class of random number generators, to determine how
large should be the sample size of the test, as a function of the generator's
period length, before the generator starts to fail the test systematically.
WWW: http://www.iro.umontreal.ca/~simardr/testu01/tu01.html
PR: ports/128861
Submitted by: bf <bf2006a at yahoo.com>
- Reset maintainership per request by maintainer
PR: ports/128520
Submitted by: Pedro F. Giffuni <giffunip at tutopia.com>
Approved by: Eric van Gyzen <eric at vangyzen.net> (maintainer)
this GPL'd suite of random number tests will be named "Dieharder". Using a
movie sequel pun for the name is a double tribute to George Marsaglia, whose
"Diehard battery of tests" of random number generators has enjoyed years of
enduring usefulness as a test suite.
The dieharder suite is more than just the diehard tests cleaned up and given a
pretty GPL'd source face in native C: tests from the Statistical Test Suite
(STS) developed by the National Institute for Standards and Technology (NIST)
are being incorporated, as are new tests developed by rgb. Where possible,
tests are parametrized and controllable so that failure, at least, is
unambiguous.
A further design goal is to provide some indication of *why* a generator fails
a test, where such information can be extracted during the test process and
placed in usable form. For example, the bit-distribution tests should
(eventually) be able to display the actual histogram for the different bit
n-tuplets.
Dieharder is by design extensible. It is intended to be the "Swiss army knife
of random number test suites", or if you prefer, "the last suite you'll ever
ware" for testing random numbers.
WWW: http://www.phy.duke.edu/~rgb/General/dieharder.php
PR: ports/128882
Submitted by: bf <bf2006a at yahoo.com>
algorithms for generating non-uniform pseudorandom variates as a library of C
functions designed and implemented by the ARVAG (Automatic Random VAriate
Generation) project group in Vienna, and released under the GNU Public License
(GPL). It is especially designed for situations where:
- a non-standard distribution or a truncated distribution is needed;
- experiments with different types of distributions are made;
- random variates for variance reduction techniques are used; or
- fast generators of predictable quality are necessary.
UNU.RAN provides generators that are superior in many aspects to those found in
quite a number of other libraries; however, due to its more sophisticated
programming interface, it might not be as easy to use.
It uses an object-oriented interface in which distributions and generators are
treated as independent objects, so that different methods for generating
non-uniform random variates may be chosen according to various criteria, such
as speed, quality, and variance reduction. It is flexible enough to permit
sampling from non-standard distributions, such as distributions that arise in
a model and can only be computed in complicated subroutines.
WWW: http://statmath.wu-wien.ac.at/unuran/
PR: ports/128883
Submitted by: bf <bf2006a at yahoo.com>
calculus (integration and differentiation) to abstract algebra. It can plot
functions and has integrated help system.
FriCAS a fork of Axiom project -- its starting point was wh-sandbox branch
of the Axiom project.
WWW: http://fricas.sourceforge.net
PR: 128805
Submitted by: Stephen Montgomery-Smith <stephen at math dot missouri dot edu>
whether devel/py-setuptools is present or not. The setup.py installer
modifies the packing list based on that, so we have to modify pkg-plist
in kind.
- Added code to handle NOPORTEXAMPLES
- Take maintainership
PR: ports/122434
Submitted by: "Eugene M. Kim" <gene at nttmcl dot com>
arithmetic. It provides an extensive set of transcendental functions,
unlimited exponent sizes, complex numbers, interval arithmetic,
numerical integration and differentiation, root-finding, linear algebra,
and much more. Almost any calculation can be performed just as well at
10-digit or 1000-digit precision, and in many cases mpmath implements
asymptotically fast algorithms that scale well for extremely high
precision work. If available, mpmath will (optionally) use gmpy to
speed up high precision operations.
WWW: http://code.google.com/p/mpmath/
PR: ports/128133
Submitted by: Wen Heping <wenheping at gmail.com>
computations. It offers an interactive environment, an expressive programming
language, a compiler, a large set of mathematical libraries of interest to
researchers and practitioners of computational sciences.
WWW: http://www.open-axiom.org
PR: 128034
Submitted by: Stephen Montgomery-Smith <stephen at math dot missouri dot edu>
SeDuMi is a software package to solve optimization problems over symmetric
cones. This includes linear, quadratic, second order conic and semidefinite
optimization, and any combination of these.
WWW: http://sedumi.mcmaster.ca/
written entirely in Python. It currently comes
bundled with renderers for XHTML, DocBook, man
pages, plain text, as well as a way to simply dump
the document to a generic form of XML. Other
renderers can be added as well and are planned
for future releases.
WWW: http://plastex.sf.net/
PR: ports/127864
Submitted by: Wen Heping <wenheping at gmail.com>
solve the standard and generalized eigenvalue problems for symmetric
(hermitian) positive definite matrices. Those specialized algorithms give
an important speed-up with respect to the generic LAPACK eigenvalue
problem solver used by NumPy (linalg.eig and linalg.eigh).
WWW: http://mdp-toolkit.sourceforge.net/symeig.html
PR: ports/127336
Submitted by: Li-Lun Wang <llwang at infor.org>
- While here, convert some spaces to tabs
PR: 127369
Submitted by: Jason Lenthe <lenthe at comcast dot net>
Fix by: Stephen Montgomery-Smith <stephen at math dot missouri dot edu> (maintainer)
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is nlwing2.
This package allows efficient computation of nonlinear aerodynamic properties
of a wing. It employs 2D section data to build a 3D potential vortex model of
the flow. It uses a robust Euler-Newton method to track the change of flow
vorticity quantities as the angle of attack progresses.
WWW: http://octave.sourceforge.net/
PR: 127300
Submitted by: Stephen Montgomery-Smith <stephen at math dot missouri dot edu>
on signed integers, rational numbers, and floating point numbers.
There is no limit to the precision except the ones implied by the
available memory in the machine GMP runs on. GMP has a rich set of
functions, and the functions have a regular interface.
This port compiles libgmp using MinGW32.
WWW: http://www.swox.com/gmp/
PR: 123391
Submitted by: Timothy Bourke <timbob at bigpond dot com>
- Adoption of (NO)PORTEXAMPLES, EXAMPLESDIR and DOCSDIR
- Adding PKGNAMEPREFIX to EXAMPLESDIR and DOCSDIR.
- Pass maintainership to submitter with hist consent
PR: 123718
Submitted by: TAOKA Fumiyoshi <fmysh at iijmio-mail dot jp>