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Author SHA1 Message Date
Wen Heping
01c6777188 - Update to 0.4.1 2010-12-02 13:42:09 +00:00
Alexey Dokuchaev
d2da4dcb85 Improve port description. 
Approved by:	maintainer timeout since December 2009
 2010-11-29 08:17:34 +00:00
Philip M. Gollucci
c24f9508d3 - Also remove them from pkg-plist lists not from me that crept in 2010-11-24 06:19:46 +00:00
Wen Heping
fabc490448 - Update to 0.31 2010-11-22 08:50:39 +00:00
Wen Heping
5c243d5c84 - Update to 2.1 2010-11-22 00:15:25 +00:00
Wen Heping
4cfe377eb9 - Update to 0.30 
PR:		ports/152205
Submitted by:	Gea-Suan Lin <gslin@gslin.org>
 2010-11-17 06:24:38 +00:00
Steven Kreuzer
1783398c20 Fix plist. 
Reported by:	QAT
 2010-11-16 23:55:41 +00:00
Wen Heping
f77bbf6dfe - Update to 2.15 
Changelog: http://search.cpan.org/src/LDS/Bio-Graphics-2.15/Changes

PR:		ports/152189
Submitted by:	Gea-Suan Lin <gslin@gslin.org>
 2010-11-16 08:07:27 +00:00
Wen Heping
dbe1b3c46b - Update to 1.5.0 2010-11-10 08:52:26 +00:00
Philippe Audeoud
3ccd369106 - Update to 0.28 2010-11-09 14:15:44 +00:00
Pav Lucistnik
b48012ad65 - Unbreak build: CPP is now part of MAKE_ENV 
Reported by:	pointyhat
 2010-11-08 15:05:11 +00:00
Wen Heping
aa13d40cda - Update to 2.10 
Changelog: http://search.cpan.org/src/RPETTETT/Bio-Das-Lite-2.10/Changes
 2010-11-04 06:24:22 +00:00
Rene Ladan
0fe3bfd649 - Unbreak by removing some old and adding some new master sites 
- Bump PORTREVISION
PR:		ports/151733
Submitted by:	Chris Petrik [c.petrik.sosa gmail.com]
 2010-10-30 23:51:30 +00:00
Wen Heping
a9e02fc8e4 - Update to 0.4.0 2010-10-26 00:34:36 +00:00
Wen Heping
8d82354698 - Update to 0.26 
- Reset maintainer to perl@
 2010-10-25 10:59:25 +00:00
Wen Heping
67d49aa254 - Update to 0.22 2010-10-22 09:29:44 +00:00
Frederic Culot
02a06c807c Update my MAINTAINER address to culot@FreeBSD.org. 
Approved by:	sahil@ (mentor)
 2010-10-20 05:53:20 +00:00
Wen Heping
891ffdbfa0 - Update to 2.14 
ChangeLog: http://search.cpan.org/src/LDS/Bio-Graphics-2.14/Changes
 2010-10-19 10:42:43 +00:00
Ade Lovett
6abd00a86b Punt autoconf267->autoconf268 2010-10-16 11:52:47 +00:00
Wen Heping
34df475911 - Update to 4.2.0 2010-10-08 02:06:53 +00:00
Ade Lovett
7e80cde328 Round one migration of ports from automake{19,110} to automake111 2010-10-05 19:57:56 +00:00
Sunpoet Po-Chuan Hsieh
40d054297f - Add an additional MASTER_SITES 
PR:		ports/151112
Submitted by:	gjb (maintainer)
Approved by:	pgollucci (mentor)
 2010-10-01 01:06:46 +00:00
Erwin Lansing
ea28b70614 Mark BROKEN: does not fetch. 2010-09-30 08:53:18 +00:00
Wen Heping
025752cd44 - Update to 2.13 2010-09-26 08:32:26 +00:00
Wen Heping
c0d7b4a1e1 - Update to 0.76 2010-09-25 08:14:02 +00:00
Martin Matuska
ddcc0de921 Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base, 
p5-IO-Compress-Zlib and p5-IO-Compress-Bzip2 modules to p5-IO-Compress.
Explicitly depend on p5-IO-Compress only if PERL_LEVEL < 500903
Bump PORTREVISION
 2010-09-21 07:56:43 +00:00
Mark Linimon
033923e0f5 Also broken on sparc64 (and, by implication, ia64). 
Hat:		portmgr
 2010-09-17 09:17:05 +00:00
Maho Nakata
893f4b14c0 Update to 1.3r1.3913. 
Actually the version number is from SVN, and maho@ manually
checked out from SVN.
The source archive is not distributed as tar ball.
 2010-09-16 21:48:04 +00:00
Wen Heping
aa10f7a2b8 - Update to 4.1.0 2010-09-16 03:31:29 +00:00
Ade Lovett
8262a7b51d Autotools update. Read ports/UPDATING 20100915 for details. 
Approved by:	portmgr (for Mk/bsd.port.mk part)
Tested by:	Multiple -exp runs
 2010-09-15 18:35:24 +00:00
Wen Heping
0d034d05fe - Update to 4.4c 2010-09-08 00:16:45 +00:00
Wen Heping
40365a66b5 - Update to 0.75 
- Reset maintainer to perl@
 2010-09-07 07:15:24 +00:00
Wen Heping
a751729898 - Update to 1.13 
PR:		ports/150317
Submitted by:	Frederic Culot <frederic@culot.org>
 2010-09-07 07:00:17 +00:00
Bernhard Froehlich
cc72c8c922 - Update MAINTAINER to submitters new mail address 
PR:		ports/150274
Submitted by:	Glen Barber <glen dot j dot barber at gmail dot com> (maintainer)
Approved by:	beat (co-mentor, implicit)
 2010-09-04 15:32:58 +00:00
Sahil Tandon
4da3929a92 - Update to 2.10.0 
- Add LICENSE
- Mark MAKE_JOBS_SAFE
- Eliminate unnecessary patch
- Note new homepage in pkg-descr
- Pass maintainership to submitter

PR:		ports/149827
Submitted by:	C-S <c-s@c-s.li>
 2010-08-21 00:28:49 +00:00
Greg Larkin
f657360287 - Update USE_PYTHON in Makefile to reflect upstream Python 
dependency version requirement

PR:		ports/149251
Submitted by:	glarkin
Approved by:	wen (via email)
 2010-08-18 14:09:34 +00:00
Andrej Zverev
0429d94053 Update to 1.12: 
- dependency on MooseX::FollowPBP added
- dependency on Moose::Policy removed

PR:		ports/149612
Submitted by:	Frederic Culot <frederic@culot.org>
 2010-08-18 12:05:38 +00:00
Li-Wen Hsu
b3866733aa - Update to 2.1.5 
- Pass maintainership to submitter

PR:		ports/149247
Submitted by:	C-S <c-s AT c-s.li>
 2010-08-04 06:30:07 +00:00
Baptiste Daroussin
a28a217ede Fix typo in maintainer mail address 
Submitted by:	Frederic Culot <frederic _at_ culot.org> (maintainer)
Approved by:	jadawin@ (co-mentor)
 2010-08-02 16:06:38 +00:00
Baptiste Daroussin
3cf9a14670 - Update to 1.12.4 
- Add libcurl as dependency
- Submitter is now maintainer

PR:		ports/149079
Submitted by:	Frederic Coulot <frederic _at_ coulot.org> (maintainer)
Approved by:	jadawin@ (co-mentor)
 2010-08-02 15:09:21 +00:00
Pav Lucistnik
39b767908d - Update the libmap instructions for amd64/8 
Submitted by:	Rick van der Zwet <info@rickvanderzwet.nl>
 2010-07-29 08:30:24 +00:00
Wen Heping
08ad71435d - Update to 1.54 
PR:		ports/148274
Submitted by:	Ju Pengfei <jupengfei@gmail.com>
Approved by:	maintainer
Feature safe:	yes
 2010-07-02 02:57:19 +00:00
Wen Heping
bd3021c9eb - Update to 2.11 
Feature safe:	yes
 2010-06-30 07:41:06 +00:00
Wen Heping
9c661b3e8e - Update to 1.17 
Feature safe:	yes
 2010-06-30 07:36:25 +00:00
Wen Heping
fd6b71cb08 - Update to 1.16 
Feature safe:	yes
 2010-06-24 00:24:22 +00:00
Wen Heping
c58b91a232 - Update to 2.04 
- Pass maintainership to perl@
Feature safe:	yes
 2010-06-22 03:28:49 +00:00
Erwin Lansing
8c6092e5ec BROKEN should not be quoted. 
No functional change.
 2010-06-13 08:40:06 +00:00
Wen Heping
a6a89abfbe - Update to 1.15 2010-06-12 06:18:36 +00:00
Anton Berezin
914f231c85 Update to 1.10. 
Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
 2010-06-10 16:56:04 +00:00
Philip M. Gollucci
aaeac0d126 - Update to 1.4.0 
- Sort pkg-plist
- seperate NOPORTDOCS and NOPORTEXAMPLES
 2010-06-08 00:18:54 +00:00
Dirk Meyer
da5e61df79 LICENSE GPLv2 2010-06-05 19:53:32 +00:00
Dirk Meyer
bad8a42899 LICENSE LGPL21 2010-06-05 06:14:28 +00:00
Wen Heping
e7bd8df79f - Update to 1.4.1 2010-06-01 06:57:30 +00:00
Ade Lovett
8d837132c7 Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. 2010-05-31 02:01:56 +00:00
Sylvio Cesar Teixeira
51df349544 - Update to 3.1.6 
PR:		ports/147194
Submitted by:	Glen Barber <glen.j.barber@gmail.com> (maintainer)
 2010-05-30 23:46:55 +00:00
Dirk Meyer
ca8e128e62 - drop USE_GNUSTEP_PREFIX 2010-05-30 12:28:39 +00:00
Wen Heping
b77703b9d2 - Update to 4.0.1 2010-05-24 07:19:35 +00:00
Dirk Meyer
cf38b673c9 - fix build for gnustep-base 1.21.0 2010-05-23 20:51:27 +00:00
Wen Heping
a5713553a7 - Update to 1.12.2 
- Reset maintainer
 2010-05-21 06:19:18 +00:00
Wen Heping
af88609ea3 - Update to 2.09 2010-05-18 08:27:03 +00:00
Wen Heping
744e974fb0 - Update to 2.0.8 2010-05-14 13:05:15 +00:00
Wen Heping
14923d1dc1 - Update to 2.0.7 
- Set maintainer to perl@
 2010-05-10 02:36:57 +00:00
Sylvio Cesar Teixeira
b5dabfb20d - Update to 3.1.4 
PR:		ports/146411
Submitted by:	Glen Barber <glen.j.barber@gmail.com> (maintainer)
 2010-05-09 13:59:34 +00:00
Wen Heping
b6ad2f761a - Update to 1.00 
- Set maintainer to perl@
 2010-05-08 08:35:32 +00:00
Greg Larkin
44b546fe8c - Removed BROKEN because file fetches and checksums correctly 
- Added another MASTER_SITES for redundancy

PR:		ports/144733
Submitted by:	Fernan Aguero <fernan.aguero@gmail.com> (maintainer)
 2010-04-28 22:37:11 +00:00
Wen Heping
d78cf9ae49 - Update to 2.04 2010-04-20 08:48:47 +00:00
Wen Heping
4834e5f360 - Update to 4.4a 
- Update my mail address to FreeBSD
 2010-04-20 08:42:04 +00:00
Dirk Meyer
2e236823ab - update to 0.81 
- fix build on amd64
 2010-04-14 05:01:48 +00:00
Wen Heping
1c40ab037b - Update to 6.2.0 
Submitted by:	Wen Heping(myself)
Approved by:	maintainer(via Email)
 2010-04-07 01:21:36 +00:00
Wen Heping
cf68531462 - Update to 2.03 2010-04-02 09:06:35 +00:00
Mark Linimon
686a04b74a Mark various ports as broken or ignore on powerpc. 
While here, remove remnants of alpha.
 2010-04-01 05:16:19 +00:00
Wen Heping
9d69e4497a - Update to 2.02 2010-03-30 01:22:56 +00:00
Wen Heping
6905d4a0d8 - Bump PORTREVISION to chase the update of math/gsl 2010-03-29 01:12:27 +00:00
Dirk Meyer
de78af3ac5 - update to 1.4.1 
Reviewed by:	exp8 run on pointyhat
Supported by:	miwi
 2010-03-28 06:47:48 +00:00
Wen Heping
4440f60cd8 - Update to 3.1.3 
- Pass maintainership to submitter

PR:		ports/144992
Submitted by:	Glen Barber <glen.j.barber@gmail.com>
 2010-03-24 06:46:44 +00:00
Pietro Cerutti
c6a2501ef2 - Chase x11-toolkits/fltk update 2010-03-23 21:14:39 +00:00
Sylvio Cesar Teixeira
f1cd5913ef - Update to 3.22 
Approved by: 	itetcu (mentor)
 2010-03-21 17:18:20 +00:00
Wen Heping
7ac145c021 - Update to 0.3.9 2010-03-19 08:32:48 +00:00
Wen Heping
6f315dae4d - Update to 2.01 2010-03-10 01:35:57 +00:00
Wen Heping
d3c411d05d - Update to 0.21 2010-03-09 07:34:48 +00:00
Wen Heping
22c4a3da76 - Update to 0.18 
- Adopt

Feature safe:	yes
 2010-03-03 13:44:19 +00:00
Wen Heping
69518f2f86 p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XML 
over HTTP primarily for biological-data).

WWW: http://search.cpan.org/dist/Bio-Das-Lite/

Feature safe:	yes
 2010-03-01 09:16:25 +00:00
Wen Heping
eeba40ae35 - Update to 0.7 
Feature safe:	yes
 2010-02-24 01:30:46 +00:00
Philip M. Gollucci
b339872c92 - Reset more ports I don't use anymore 2010-02-10 21:47:48 +00:00
Edwin Groothuis
8658684e4b Update to 3.1.2 2010-02-10 09:47:48 +00:00
Wen Heping
22c4fef9a0 - Update to 2.00 2010-02-10 06:10:33 +00:00
Dirk Meyer
ca9c60461c - update to jpeg-8 2010-02-05 11:46:55 +00:00
Wen Heping
49bdce58bc - Update to 0.99 
- Update my mail address to FreeBSD
 2010-02-03 08:25:35 +00:00
Martin Wilke
53fc8b212a - Update to 3.1.1 
PR:		143437
Submitted by:	Ports Fury
 2010-02-02 22:42:47 +00:00
Philip M. Gollucci
bc7c753e14 - use $SUB_FILES to dynamically adjust pkg-message 
PR:             ports/142408
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Approved by:    fernan@iib.unsam.edu.ar (maintainer)
 2010-01-31 03:42:20 +00:00
Jun Kuriyama
326d89e098 - Remove unneeded dependencies which is in perl-5.8.9 dist 
(part 19; last!).

Approved by:	portmgr (itetcu)
 2010-01-29 14:52:21 +00:00
Philip M. Gollucci
f6af25aa4a - actually remove old patch 
Reported by:	QAT
 2010-01-17 00:16:34 +00:00
Philip M. Gollucci
c49b8e0836 - Fix on amd64 
PR:             ports/142472
Submitted by:   Edmund Sumbar <esumbar@ualberta.ca>
 2010-01-16 17:54:38 +00:00
Jun Kuriyama
cbffb3af9d - Remove unneeded dependencies which is in perl-5.8.9 dist from ports 
maintained by (perl|ports|kuriyama)@FreeBSD.org.

- Targets are: Test::Simple, Digest::MD5, Locale-Maketext,
  ExtUtils::MakeMaker, ExtUtils::ParseXS, File::Temp, Getopt::Long,
  Encode, Digest, Pod::Parser, File::Spec.
 2010-01-16 14:45:49 +00:00
Philip M. Gollucci
3781ecad36 - SUB_FILES += pkg-message 
PR:             ports/142407
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
Approved by:    Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2010-01-09 23:51:26 +00:00
Wen Heping
d938c73fdc - Update to 1.03 
- Update my mail address to FreeBSD
 2010-01-09 01:21:21 +00:00
Philip M. Gollucci
8086ac7032 - SBU_FILES += pkg-message 
PR:             ports/142409
Submitted by:   Sevan Janiyan <venture37@geeklan.co.uk>
 2010-01-08 01:30:20 +00:00
Wen Heping
959567bbb7 - Update to 1.995 2010-01-07 02:27:20 +00:00
Wen Heping
43d8e24a17 - Update to 1.53 
PR:		ports/142221
Submitted by:	Wen Heping (myself)
Approved by:	maintainer
 2010-01-06 00:29:25 +00:00
Wen Heping
47dea29df8 python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees) 
reader for python.

WWW:    http://simon.net.nz/articles/python-nexus
 2009-12-29 13:39:14 +00:00
Wen Heping
4beee06b6b - Fix fetch error 2009-12-27 03:05:03 +00:00
Wen Heping
a70e97a715 - Update to 0.3.7 2009-12-24 03:14:34 +00:00
Martin Wilke
3cb69b845f - Update to 7.1.11 
PR:		141812
Submitted by:	Ports Fury
 2009-12-22 11:25:15 +00:00
Wen Heping
ac98d03ccc - Update to 0.3.5 2009-12-21 03:29:55 +00:00
Doug Barton
2fadfa2cfb For ports maintained by ports@FreeBSD.org, remove names and/or 
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
 2009-12-21 02:19:12 +00:00
Wen Heping
46e3211a5d - Update to 1.1.4 
Submitted by:	Wen Heping (myself)
Approved by:	maintainer (via Email)
 2009-12-18 02:55:57 +00:00
Wen Heping
eb83a3ad9d - Update to 1.4 
- Update my mail address to FreeBSD
 2009-12-17 06:51:53 +00:00
Wen Heping
e514f1a729 - Update to 0.3.4 2009-12-16 12:48:04 +00:00
Philip M. Gollucci
89c63fe984 - Turn over a bunch of p5- ports that change infrequently to perl@ 
so more people can look at them.
 2009-12-13 18:07:49 +00:00
Wen Heping
d64a5ae397 - Update to 1.994 2009-12-11 08:02:53 +00:00
Wen Heping
5a07a83836 - Update to 0.3.3 2009-12-06 08:47:36 +00:00
Wen Heping
ad74a3628a - Update to 1.993 2009-12-04 11:53:48 +00:00
Wen Heping
e2b9177a1b - Update to 1.6.1 
Approved by:	maintainer (via Email)
 2009-12-04 11:50:10 +00:00
Max Brazhnikov
7cb3294da7 Chase math/gsl update, 
bump PORTREVISION
 2009-12-01 20:33:45 +00:00
Wen Heping
564d9e9ea8 - Update to 2.0.12 
- Update my mail address to FreeBSD
 2009-11-29 01:16:36 +00:00
Sylvio Cesar Teixeira
ba072d1713 - Update my mail address to FreeBSD 
Approved by:	miwi (mentor)
 2009-11-27 22:52:30 +00:00
Pav Lucistnik
38eb8c5339 - Mark MAKE_JOBS_UNSAFE 
Reported by:	pointyhat
 2009-11-20 22:53:09 +00:00
Wen Heping
40efa7ff9b - Update to 1.992 
- Update my mail address to FreeBSD
 2009-11-20 05:10:17 +00:00
Martin Wilke
0625d15cec - broken checksum mismatch 2009-11-19 12:43:06 +00:00
Pav Lucistnik
ed9c0642a6 - Mark MAKE_JOBS_UNSAFE 
Reported by:	pointyhat
 2009-11-18 22:39:55 +00:00
Wen Heping
695ed5163e pyfasta is a python module for fast, memory-efficient, pythonic 
access to fasta sequence files.

WWW:    http://bitbucket.org/brentp/biostuff/src/
 2009-11-18 05:53:17 +00:00
Wen Heping
fad82e7fd4 - Update to 21.1.1 2009-11-18 05:33:10 +00:00
Dmitry Marakasov
8dbd1070da Velvet is a de novo genomic assembler specially designed for short read 
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).

Citation:

Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)

WWW: http://www.ebi.ac.uk/~zerbino/velvet/

PR:		140147
Submitted by:	Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
 2009-11-07 01:23:59 +00:00
Pav Lucistnik
975c364f32 - Annotate that 8.x no longer needs libmap hack 
Reported by:	rene
 2009-10-01 07:34:28 +00:00
Wen Heping
9c55d004d3 - Update to 4.0.0 
- Update my mail address to FreeBSD

PR:		ports/137652
Submitted by:	wenheping@gmail.com(myself)
Approved by:	miwi(mentor)
Feature safe:	yes
 2009-09-23 01:06:29 +00:00
Jason Evans
97df6db5cb Update to Crux 1.2.0. 
Feature safe:	yes
 2009-09-19 17:58:13 +00:00
Renato Botelho
3905d8ced0 UNBREAK: Probably was a temporary failure, checksums are ok now. 
Feature safe:	yes
 2009-09-16 15:57:18 +00:00
Martin Wilke
d583c2c02f -Update to 3.69 
PR:		138813
Submitted by:	Ports Fury
Feature safe:	yes
 2009-09-16 14:27:00 +00:00
Gerald Pfeifer
27ab5137ce Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 
implies lang/gcc44 up from lang/gcc43.

Approved by:	portmgr
 2009-09-13 00:08:01 +00:00
Philippe Audeoud
64f2f2465b - Update to 1.14 2009-09-08 12:08:12 +00:00
Martin Wilke
2f12ae5444 - Update to 138038 
PR:		138038
Submitted by:	Wen Heping <wenheping@gmail.com>
Approved by:	maintainer
 2009-09-04 20:41:25 +00:00
Martin Wilke
4e4a5fc43b - Update to 0.982 
PR:		138264
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-08-28 23:36:45 +00:00
Martin Wilke
ab94a3bda7 Bio::SCF module allows you to read and update (in a restricted 
way) SCF chromatographic sequence files. It is an interface to
Roger Staden's io-lib. See the installation directions for further
instructions.

WWW:	http://search.cpan.org/dist/Bio-SCF/

PR:		ports/138263
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-08-28 23:36:09 +00:00
Martin Wilke
4afd96b25b Io_lib is a library of file reading and writing code to provide a 
general purpose trace file (and Experiment File) reading interface.
The programmer simply calls the (eg) read_reading to create a "Read"
C structure with the data loaded into memory. It has been compiled
and tested on a variety of unix systems, MacOS X and MS Windows.

WWW:	http://staden.sourceforge.net/

PR:		ports/138254
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-08-28 23:34:20 +00:00
Marcelo Araujo
7c7ff787ef - Update to 3.21. 
- Reset maintainer to submitter.

PR:		ports/138192
Submitted by:	Sylvio Cesar <scjamorim@bsd.com.br>
 2009-08-28 14:52:05 +00:00
Martin Wilke
15df496943 - Update to 1.12 
PR:		138230
Submitted by:	Wen Heping <wenheping@gmail.com>
 2009-08-27 20:34:58 +00:00
Max Brazhnikov
677abde4b7 Update to 35.4.9 
PR:		ports/137991
Submitted by:	Fernan Aguero (maintainer)
 2009-08-23 15:47:37 +00:00
Martin Wilke
cb1a940d17 Bio::NEXUS package provides an object-oriented, Perl-based 
applications programming interface (API) to the NEXUS file
format of Maddison, et al., 1997 (Syst. Biol. 46:590-621).
NEXUS is a powerful and extensible format designed for use
in evolutionary analysis, including the analysis of molecular
sequence data as well as classical morphological and life-history
data. NEXUS is the input or output format for software such as
PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
so on.  This package also contains the demonstration applications
nexplot.pl (plot character data with a tree) and nextool.pl
(allowing programmatic editing, e.g., selecting particular
clades or subsets of data).

WWW: http://search.cpan.org/dist/Bio-NEXUS/

PR:		ports/137983
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-08-22 20:39:51 +00:00
Martin Wilke
17b7bfd60c - BROKEN checksum mismatch 2009-08-22 08:45:12 +00:00
Dmitry Marakasov
c926af277e - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
Martin Wilke
a3c70c3529 - Fix fetch 
PR:		137840
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2009-08-17 15:38:37 +00:00
Martin Wilke
654825e7a9 - Update MASTER_SITES 
PR:		137750
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2009-08-14 08:33:22 +00:00
Martin Wilke
a69f9725b4 - Update to 4.3 
PR:		137625
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-08-13 17:00:04 +00:00
Erwin Lansing
9f3d7499d2 Fix PKGORIGIN 
Submitted by:	pointyhat
 2009-08-08 13:26:13 +00:00
Pav Lucistnik
4b4b7f19aa - Relax check on bioperl version; people keep forgetting to update this check 
when updating bioperl port

Reported by:	pointyhat
 2009-08-02 20:00:08 +00:00
Pav Lucistnik
55f1f70c83 - Unbreak fetch 
Submitted by:	maintainer
 2009-08-02 19:59:03 +00:00
Jeremy Messenger
789d75c728 -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 
-Update libtool and libltdl to 2.2.6a.
-Remove devel/libtool15 and devel/libltdl15.
-Fix ports build with libtool22/libltdl22.
-Bump ports that depend on libltdl22 due to shared library version change.
-Explain what to do update in the UPDATING.

It has been tested with GNOME2, XFCE4, KDE3, KDE4 and other many wm/desktop
and applications in the runtime.

With help:	marcus and kwm
Pointyhat-exp:	a few times by pav
Tested by:	pgollucci, "Romain Tartière" <romain@blogreen.org>, and
		a few MarcusCom CVS users. Also, I might have missed a few.
Repocopy by:	marcus
Approved by:	portmgr
 2009-08-02 19:36:34 +00:00
Dirk Meyer
eca78ec61b - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 
Requested by:	edwin
 2009-07-31 13:57:52 +00:00
Philip M. Gollucci
20cfadf5f7 Utilize %%SITE_PERL%% and %%PERL_ARCH%% in pkg-plists 
PR:             ports/136771
Exp Run by:     pav
Approved by:    portmgr (pav)
 2009-07-30 23:04:49 +00:00
Philip M. Gollucci
c10f314307 - lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks 
PR:             ports/135398
Tested by:      2 -exp runs by pav
Approved by:    portmgr (pav)
 2009-07-22 16:27:08 +00:00