61 lines
1.7 KiB
Makefile
61 lines
1.7 KiB
Makefile
# Created by: dbader@eece.unm.edu
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# $FreeBSD$
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PORTNAME= paml
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PORTVERSION= 4.9c
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PORTREVISION= 1
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CATEGORIES= biology
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MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/
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DISTNAME= ${PORTNAME}${PORTVERSION}
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MAINTAINER= jrm@FreeBSD.org
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COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML)
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LICENSE= GPLv3
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USES= gmake tar:tgz
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BINARIES= baseml basemlg chi2 codeml evolver evolverNSbranches \
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evolverNSbranchsites evolverNSsites pamp yn00
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PORTDOCS= MCMCtree.Tutorials.pdf MCMCtreeDOC.pdf pamlDOC.pdf pamlFAQs.pdf \
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pamlHistory.txt README.txt
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DATA= 3s.trees 4s.trees 5s.trees 6s.trees GeneticCode.txt MCaa.dat \
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MCbase.dat MCbaseRandomTree.dat MCcodon.dat aaml.ctl baseml.ctl \
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brown.nuc brown.rooted.trees brown.trees codeml.ctl codonml.ctl \
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mcmctree.ctl pamp.ctl paupblock paupend paupstart stewart.aa \
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stewart.trees yn00.ctl
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PORTDATA= ${DATA} dat examples Technical
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OPTIONS_DEFINE= DOCS
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# Remove Windows executables
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post-extract:
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@${FIND} ${WRKSRC}/Technical -name "*.exe" -delete
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do-build:
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@cd ${WRKSRC}/src && \
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${SETENV} ${MAKE_ENV} ${MAKE_CMD}
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.for f in NSbranches NSsites NSbranchsites
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@cd ${WRKSRC}/src && \
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${CC} ${CFLAGS} -DCodon${f} -o evolver${f} evolver.c tools.c -lm
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.endfor
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do-install:
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.for f in ${BINARIES}
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${INSTALL_PROGRAM} ${WRKSRC}/src/${f} ${STAGEDIR}${PREFIX}/bin
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.endfor
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@${MKDIR} ${STAGEDIR}${DATADIR}
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.for f in ${DATA}
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${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}/${DATADIR}
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.endfor
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(cd ${WRKSRC} && ${COPYTREE_SHARE} "dat examples Technical" \
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${STAGEDIR}/${DATADIR})
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do-install-DOCS-on:
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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${INSTALL_DATA} ${WRKSRC}/doc/* ${STAGEDIR}${DOCSDIR}
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${INSTALL_DATA} ${WRKSRC}/README.txt ${STAGEDIR}${DOCSDIR}
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.include <bsd.port.mk>
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