40 lines
1 KiB
Makefile
40 lines
1 KiB
Makefile
PORTNAME= kallisto
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DISTVERSIONPREFIX= v
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DISTVERSION= 0.46.1
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PORTEPOCH= 1
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Quantify abundances of transcripts from RNA-Seq data
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LICENSE= BSD2CLAUSE
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LICENSE_FILE= ${WRKSRC}/license.txt
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BUILD_DEPENDS= autoconf>=0:devel/autoconf
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LIB_DEPENDS= libhdf5.so:science/hdf5 \
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libsz.so:science/szip
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USES= cmake:noninja compiler:c++11-lang gmake localbase:ldflags
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USE_GITHUB= yes
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GH_ACCOUNT= pachterlab
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SUB_FILES= kallisto-test
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PORTEXAMPLES= *
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PLIST_FILES= bin/kallisto
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EXAMPLES_PLIST_FILES= bin/kallisto-test
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# hdf5 is being phased out and is no longer built in by default, but is still
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# required for Sleuth (requires kallisto bootstrap estimates) and other
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# downstream tools. Remove this after Sleuth et al catch up.
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CMAKE_ARGS+= -DUSE_HDF5:BOOL=ON
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MAKE_JOBS_UNSAFE= yes
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LDFLAGS+= -lz
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OPTIONS_DEFINE= EXAMPLES
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post-install-EXAMPLES-on:
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${INSTALL_SCRIPT} ${WRKDIR}/kallisto-test ${STAGEDIR}${PREFIX}/bin
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cd ${WRKSRC}/test && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}
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.include <bsd.port.mk>
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