.. |
ariadne
|
Cleanup $() variables in ports Makefiles.
|
2016-07-20 15:33:20 +00:00 |
artemis
|
${RM} already has -f.
|
2016-10-21 12:51:40 +00:00 |
avida
|
biology/avida: Fix ncurses from ports support
|
2016-11-19 14:56:46 +00:00 |
babel
|
Unbreak the build on PowerPC (at least) by always using va_copy() macro for
|
2015-09-02 10:10:06 +00:00 |
bcftools
|
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
|
2016-05-26 20:28:55 +00:00 |
bedtools
|
biology/bedtools is not jobs safe
|
2016-08-22 04:32:18 +00:00 |
biococoa
|
Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.
|
2015-09-19 10:33:34 +00:00 |
biojava
|
- Mark it BROKEN
|
2016-10-28 01:49:40 +00:00 |
blat
|
biology/blat: Fix build on DF (taken from dports)
|
2016-12-18 04:46:53 +00:00 |
bowtie
|
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
|
2016-11-20 09:38:08 +00:00 |
bowtie2
|
biology/bowtie2: Update to version 2.2.9
|
2016-12-20 17:01:27 +00:00 |
bwa
|
Mark various ports broken on aarch64 and armv6.
|
2017-01-31 03:40:46 +00:00 |
cd-hit
|
biology/cd-hit: Update to bug-fix release 4.6.6
|
2016-12-20 16:48:12 +00:00 |
cdbfasta
|
Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
|
2017-01-20 20:33:30 +00:00 |
chemeq
|
biology/chemeq: fix build on GCC (taken from dports)
|
2016-12-18 04:22:26 +00:00 |
clustalw
|
Remove useless WRKSRC definitions.
|
2016-05-25 15:43:34 +00:00 |
consed
|
- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with
|
2016-09-05 19:23:42 +00:00 |
crux
|
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
|
2016-12-07 13:24:56 +00:00 |
diamond
|
biology/diamond: Update to version 0.8.35.
|
2017-02-05 22:23:32 +00:00 |
emboss
|
- update libgd to 2.2.2
|
2016-07-20 09:33:31 +00:00 |
fasta
|
${RM} already has -f.
|
2016-10-21 12:51:40 +00:00 |
fasta3
|
- Fix trailing whitespace in pkg-messages
|
2016-05-19 11:09:14 +00:00 |
fastdnaml
|
Convert LICENSE= "GPLxx # or later" to "GPLxx+"
|
2016-01-12 16:20:31 +00:00 |
fastool
|
Never set WRKSRC when using USE_GITHUB.
|
2017-01-03 18:12:13 +00:00 |
fasttree
|
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
|
2016-11-20 09:38:08 +00:00 |
fastx-toolkit
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
fluctuate
|
- Switch to options helpers
|
2015-11-19 00:51:15 +00:00 |
garlic
|
|
|
gff2ps
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
gmap
|
The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.
|
2016-11-08 19:29:56 +00:00 |
gperiodic
|
Remove libintl.so.9 compatibility link that was added in r374303 to
|
2016-12-08 19:52:19 +00:00 |
grappa
|
- Fix trailing whitespace in pkg-descrs, categories [a-f]*
|
2016-05-19 10:21:23 +00:00 |
hmmer
|
- Update maintainer mail address
|
2015-12-11 08:48:56 +00:00 |
htslib
|
Use USES=pathfix where applicable.
|
2016-10-21 15:21:13 +00:00 |
iolib
|
- Update to 1.14.8
|
2016-05-01 01:03:48 +00:00 |
jalview
|
- Fix trailing whitespace in pkg-descrs, categories [a-f]*
|
2016-05-19 10:21:23 +00:00 |
jellyfish
|
Remove BROKEN_FreeBSD_9
|
2017-01-01 03:45:12 +00:00 |
lagan
|
- Fix trailing whitespace in pkg-messages
|
2016-05-19 11:09:14 +00:00 |
lamarc
|
biology/lamarc: Fix build on DF (taken from dports)
|
2016-12-18 04:34:33 +00:00 |
libgtextutils
|
Use USES=pathfix where applicable.
|
2016-10-21 15:21:13 +00:00 |
libsbml
|
Cleanup no longer needed CHMOD usage after r424898.
|
2016-11-02 22:45:14 +00:00 |
linux-foldingathome
|
- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with
|
2016-09-05 19:23:42 +00:00 |
mafft
|
- Fix trailing whitespace in pkg-descrs, categories [a-f]*
|
2016-05-19 10:21:23 +00:00 |
mapm3
|
- Fix trailing whitespace in pkg-descrs, categories [a-f]*
|
2016-05-19 10:21:23 +00:00 |
migrate
|
- Switch to options helpers
|
2016-04-17 10:15:59 +00:00 |
molden
|
- Mark BROKEN: does not fetch, size/checksum mismatch
|
2017-02-07 14:20:09 +00:00 |
mopac
|
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
|
2016-12-07 13:24:56 +00:00 |
mrbayes
|
|
|
mummer
|
Fix build on mips by properly respecting compiler and flags
|
2015-08-05 12:18:41 +00:00 |
muscle
|
Mark various leaf ports broken on aarch64, and, where appropriate, other
|
2016-11-11 09:31:02 +00:00 |
ncbi-blast+
|
biology/ncbi-blast+: Add MAKE_JOBS_UNSAFE
|
2016-12-22 16:49:16 +00:00 |
ncbi-toolkit
|
Remove libjpeg.so.11 compatibility link that was added in r374303 to
|
2016-12-08 16:39:11 +00:00 |
njplot
|
biology/njplot: Add site in MASTER_SITES because package builders are
|
2016-11-28 15:19:42 +00:00 |
p5-AcePerl
|
Mark various leaf ports broken on aarch64, and, where appropriate, other
|
2016-11-11 09:31:02 +00:00 |
p5-Bio-ASN1-EntrezGene
|
- Add LICENSE
|
2016-12-18 15:25:13 +00:00 |
p5-Bio-Coordinate
|
- Add p5-Bio-Coordinate 1.007001
|
2016-12-19 15:54:39 +00:00 |
p5-Bio-Das
|
- Add LICENSE
|
2016-12-18 15:25:18 +00:00 |
p5-Bio-Das-Lite
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
p5-Bio-GFF3
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
p5-Bio-Glite
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
p5-Bio-Graphics
|
Bump PORTREVISION for ports affected by the fix the last commit.
|
2017-01-31 16:21:45 +00:00 |
p5-Bio-MAGETAB
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
p5-Bio-NEXUS
|
- Fix trailing whitespace in pkg-descrs, categories [a-f]*
|
2016-05-19 10:21:23 +00:00 |
p5-Bio-Phylo
|
- Add LICENSE_FILE
|
2016-12-18 15:25:22 +00:00 |
p5-Bio-SCF
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
p5-BioPerl
|
Bump PORTREVISION for ports affected by the fix the last commit.
|
2017-01-31 16:21:45 +00:00 |
p5-BioPerl-Run
|
Bump PORTREVISION for ports affected by the fix the last commit.
|
2017-01-31 16:21:45 +00:00 |
p5-transdecoder
|
Never set WRKSRC when using USE_GITHUB.
|
2017-01-03 18:12:13 +00:00 |
paml
|
Cleanup no longer needed CHMOD usage after r424898.
|
2016-11-02 22:45:14 +00:00 |
phrap
|
|
|
phred
|
|
|
phylip
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
phyml
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
plink
|
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
|
2016-12-07 13:24:56 +00:00 |
plinkseq
|
Mark various leaf ports broken on aarch64, and, where appropriate, other
|
2016-11-11 09:31:02 +00:00 |
primer3
|
|
|
protomol
|
biology/protomol: Support build with C++11 (taken from dports)
|
2016-12-18 05:34:42 +00:00 |
psi88
|
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
|
2016-12-07 13:24:56 +00:00 |
py-biom-format
|
Update email address to jrm@FreeBSD.org for ports that I maintain
|
2016-09-23 21:42:02 +00:00 |
py-biopython
|
- Update to 1.68
|
2016-09-23 01:54:45 +00:00 |
pycogent
|
- Update to 1.9 [1]
|
2016-08-08 11:21:04 +00:00 |
pyfasta
|
- Fix trailing whitespace in pkg-descrs, categories [a-f]*
|
2016-05-19 10:21:23 +00:00 |
python-nexus
|
- Update to 1.35
|
2016-06-08 07:39:05 +00:00 |
recombine
|
When there is a do-install target, do not use a post-install target, do
|
2016-07-19 11:04:13 +00:00 |
ruby-bio
|
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
|
2016-04-01 13:29:15 +00:00 |
rubygem-bio
|
Update to 1.5.1
|
2017-02-06 23:03:17 +00:00 |
samtools
|
biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1
|
2016-05-26 20:28:55 +00:00 |
seaview
|
biology/seaview: Update version 4.5.4.8=>4.6
|
2016-06-10 11:06:42 +00:00 |
seqan
|
- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]
|
2016-09-14 19:38:58 +00:00 |
seqan-apps
|
- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL
|
2017-01-09 13:16:49 +00:00 |
seqan1
|
When there is a do-install target, do not use a post-install target, do
|
2016-07-19 11:04:13 +00:00 |
seqio
|
|
|
seqtools
|
Remove BROKEN_FreeBSD_9
|
2017-01-01 03:45:12 +00:00 |
sim4
|
|
|
slclust
|
Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/
|
2017-01-20 20:33:30 +00:00 |
ssaha
|
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
|
2016-11-20 09:38:08 +00:00 |
t_coffee
|
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
|
2016-12-07 13:24:56 +00:00 |
tinker
|
Bump PORTREVISIONS for ports depending on the canonical version of GCC and
|
2016-12-07 13:24:56 +00:00 |
treepuzzle
|
|
|
treeviewx
|
GOOGLE_CODE has gone away.
|
2016-09-14 15:59:34 +00:00 |
trimmomatic
|
Trimmomatic performs a variety of useful trimming tasks for illumina
|
2016-03-17 08:21:14 +00:00 |
tRNAscan-SE
|
Prevent collision with getline(3)
|
2016-05-13 18:38:34 +00:00 |
ugene
|
- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL
|
2017-01-09 13:16:49 +00:00 |
vcftools
|
Assume "pkg-config zlib" works after 9.x reached EOL
|
2017-01-03 17:06:49 +00:00 |
velvet
|
|
|
wise
|
Remove libintl.so.9 compatibility link that was added in r374303 to
|
2016-12-08 19:52:19 +00:00 |
xmolwt
|
Remove libintl.so.9 compatibility link that was added in r374303 to
|
2016-12-08 19:52:19 +00:00 |
Makefile
|
Move devel/rubygem-bio to biology/rubygem-bio
|
2017-02-05 04:26:56 +00:00 |