155 lines
6.4 KiB
Text
155 lines
6.4 KiB
Text
bin/br_biofetch.rb
|
|
bin/br_bioflat.rb
|
|
bin/br_biogetseq.rb
|
|
bin/br_pmfetch.rb
|
|
@unexec if cmp -s %D/etc/bioinformatics/seqdatabase.ini %D/etc/bioinformatics/seqdatabase.ini.sample; then rm -f %D/etc/bioinformatics/seqdatabase.ini; fi
|
|
etc/bioinformatics/seqdatabase.ini.sample
|
|
@exec [ ! -f %B/etc/bioinformatics/seqdatabase.ini ] && cp %B/%f %B/etc/bioinformatics/seqdatabase.ini
|
|
@dirrm etc/bioinformatics
|
|
%%RUBY_SITELIBDIR%%/bio.rb
|
|
%%RUBY_SITELIBDIR%%/bio/alignment.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/alignfactory.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/format0.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/format8.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/rexml.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/wublast.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blast/xmlparser.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/blat/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/clustalw.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/clustalw/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/emboss.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/fasta.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/fasta/format10.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/fasta/format6.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/genscan/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/hmmer.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/hmmer/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/mafft.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/mafft/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/psort.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/psort/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/sim4.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/sim4/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/sosui/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/spidey/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/targetp/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/appl/tmhmm/report.rb
|
|
%%RUBY_SITELIBDIR%%/bio/data/aa.rb
|
|
%%RUBY_SITELIBDIR%%/bio/data/codontable.rb
|
|
%%RUBY_SITELIBDIR%%/bio/data/na.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/aaindex.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/common.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/embl.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/sptr.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/swissprot.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/embl/trembl.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fantom.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/fasta.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/common.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/ddbj.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/genbank.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/genpept.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/genbank/refseq.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/gff.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/go.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/brite.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/cell.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/compound.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/enzyme.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/genes.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/genome.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/glycan.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/keggtab.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/ko.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/microarray.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/kegg/reaction.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/litdb.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/medline.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/nbrf.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/atom.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/chain.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/model.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/pdb.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/residue.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/pdb/utils.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/prosite.rb
|
|
%%RUBY_SITELIBDIR%%/bio/db/transfac.rb
|
|
%%RUBY_SITELIBDIR%%/bio/extend.rb
|
|
%%RUBY_SITELIBDIR%%/bio/feature.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/brdb.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/das.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/dbget.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/ddbjxml.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/fetch.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile/bdb.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile/index.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/flatfile/indexer.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/keggapi.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/pubmed.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/registry.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/soapwsdl.rb
|
|
%%RUBY_SITELIBDIR%%/bio/io/sql.rb
|
|
%%RUBY_SITELIBDIR%%/bio/location.rb
|
|
%%RUBY_SITELIBDIR%%/bio/pathway.rb
|
|
%%RUBY_SITELIBDIR%%/bio/reference.rb
|
|
%%RUBY_SITELIBDIR%%/bio/sequence.rb
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/io/flatfile
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/io
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/pdb
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/kegg
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/genbank
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db/embl
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/db
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/data
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/tmhmm
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/targetp
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/spidey
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/sosui
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/sim4
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/psort
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/mafft
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/hmmer
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/genscan
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/fasta
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/clustalw
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/blat
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl/blast
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio/appl
|
|
@dirrm %%RUBY_SITELIBDIR%%/bio
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/biofetch.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/dbget
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/fasta2tab.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/fsplit.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/gb2fasta.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/gb2tab.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/gbtab2mysql.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/genes2nuc.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/genes2pep.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/genes2tab.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/genome2rb.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/genome2tab.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/goslim.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/gt2fasta.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/pmfetch.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/pmsearch.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/ssearch2tab.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/tdiary.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/tfastx2tab.rb
|
|
%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/vs-genes.rb
|
|
%%PORTDOCS%%@dirrm %%RUBY_MODEXAMPLESDIR%%
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ChangeLog
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/README
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/BioRuby.rd.ja
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Design.rd.ja
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/KEGG_API.rd.ja
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/TODO.rd.ja
|
|
%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Tutorial.rd.ja
|
|
%%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%%/ja
|
|
%%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%%
|