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Beech Rintoul 077602338f - update to 5.4.5. 
- use gtk by default because WITHOUT_GTK does not work.
- use PORTDOCS and PORTEXAMPLES

PR:		ports/169031
Submitted by:	Shin-ya Murakami <murashin@gfd-dennou.org> (maintainer)
2012-06-14 05:25:29 +00:00
..
2d-rewriter - remove MD5 2011-07-03 13:22:24 +00:00
2dhf adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
abinit - update png to 1.5.10 2012-06-01 05:26:28 +00:00
afni - update png to 1.5.10 2012-06-01 05:26:28 +00:00
avogadro - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
bddsolve Mark as broken on powerpc. 2011-12-28 06:55:26 +00:00
bft - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
bodr - remove MD5 2011-07-03 13:22:24 +00:00
brian - update png to 1.5.10 2012-06-01 05:26:28 +00:00
buddy Remove more tags from pkg-descr files fo the form: 2011-10-24 04:17:37 +00:00
cdcl - update to 5.4.5. 2012-06-14 05:25:29 +00:00
cdf Mark broken on powerpc as well as sparc64. (In fact, on all the tier-2s.) 2011-11-10 05:38:32 +00:00
cdo - Update to 1.5.4 2012-05-19 18:32:42 +00:00
cgnslib - Bump PORTREVISION for science/hdf5-18 shlib change 2011-07-15 07:00:46 +00:00
checkmol - Bump PORTREVISION (freepascal ports were updated) 2012-04-19 06:51:44 +00:00
chemical-mime-data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool-devel - update png to 1.5.10 2012-06-01 05:26:28 +00:00
clhep Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since 2011-08-11 19:20:17 +00:00
colt Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 2011-07-21 05:03:02 +00:00
crf++ - remove MD5 2011-07-03 13:22:24 +00:00
dcl - Update to 5.4.5 2012-06-14 05:15:47 +00:00
devisor Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 2011-07-21 05:03:02 +00:00
dlpoly-classic DL_POLY is a general purpose classical molecular dynamics (MD) simulation 2012-04-17 17:35:33 +00:00
dtiquery - remove MD5 2011-07-03 13:22:24 +00:00
ecs - update png to 1.5.10 2012-06-01 05:26:28 +00:00
elmer-eio - remove MD5 2011-07-03 13:22:24 +00:00
elmer-hutiter adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
elmer-matc - remove MD5 2011-07-03 13:22:24 +00:00
elmer-meshgen2d - remove MD5 2011-07-03 13:22:24 +00:00
elmergrid - remove MD5 2011-07-03 13:22:24 +00:00
elmerpost Mark as broken on recent i386-9: does not compile. 2011-08-29 04:10:04 +00:00
epte - remove MD5 2011-07-03 13:22:24 +00:00
euler - update png to 1.5.10 2012-06-01 05:26:28 +00:00
fastcap fix the clang build 2011-08-20 11:28:54 +00:00
fasthenry The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
felt - remove MD5 2011-07-03 13:22:24 +00:00
flounder - use graphics/giflib 2012-06-01 11:14:55 +00:00
fvm - Bump PORTREVISION for science/hdf5-18 shlib change 2011-07-15 07:00:46 +00:00
g3data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gamess adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
gchemutils OptionsNG my ports. 2012-06-12 18:49:15 +00:00
gdis - update png to 1.5.10 2012-06-01 05:26:28 +00:00
getdp - update png to 1.5.10 2012-06-01 05:26:28 +00:00
ghemical - update png to 1.5.10 2012-06-01 05:26:28 +00:00
ghmm - remove MD5 2011-07-03 13:22:24 +00:00
gnudatalanguage - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gramps - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gromacs - update fftw3* to 3.3 [1], and adjust dependent ports 2011-10-17 10:08:33 +00:00
gsmc - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gsystem - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gtamsanalyzer
gwyddion - update png to 1.5.10 2012-06-01 05:26:28 +00:00
h5utils - update png to 1.5.10 2012-06-01 05:26:28 +00:00
harminv - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
hdf Add the three overlooked headers to the pkg-plist. 2012-04-23 21:09:10 +00:00
hdf-java -Update to 2.8 2012-02-13 05:12:38 +00:00
hdf5 - remove MD5 2011-07-03 13:22:24 +00:00
hdf5-18 - Update to 1.8.9 2012-06-06 16:45:22 +00:00
hs-bio - Update to 0.5.2 2012-06-03 22:21:27 +00:00
ics - remove MD5 2011-07-03 13:22:24 +00:00
InsightToolkit - remove MD5 2011-07-03 13:22:24 +00:00
isaac-cfd - remove MD5 2011-07-03 13:22:24 +00:00
jmol - Update to 12.2.23 2012-04-26 01:15:18 +00:00
jstrack - Update to 3.3.3a 2012-03-18 04:47:23 +00:00
kalzium - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
kmovisto - update png to 1.5.10 2012-06-01 05:26:28 +00:00
kst - update png to 1.5.10 2012-06-01 05:26:28 +00:00
kst2 - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
lamprop
libctl Remove a special configuration for versions of FreeBSD before 7.0 2011-09-18 20:01:12 +00:00
libghemical Use libdata/pkgconfig instead of lib/pkgconfig, 2011-08-25 02:01:42 +00:00
libint - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
libkml - Update to 1.2.0 2012-05-07 06:21:34 +00:00
liblinear
liboglappth - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
libquantum - remove MD5 2011-07-03 13:22:24 +00:00
libsvm The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
libsvm-python The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
linsmith - update png to 1.5.10 2012-06-01 05:26:28 +00:00
massxpert - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
mayavi - update png to 1.5.10 2012-06-01 05:26:28 +00:00
mbdyn adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
mcstas - update png to 1.5.10 2012-06-01 05:26:28 +00:00
medit
meep Replace USE_GCC=4.5+ by USE_GCC=4.6+ which has been transparently 2012-04-07 15:31:51 +00:00
minc - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
minc2 - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
mol2ps - Bump PORTREVISION (freepascal ports were updated) 2012-04-19 06:51:44 +00:00
mpb adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
mpqc - update png to 1.5.10 2012-06-01 05:26:28 +00:00
mpqc-mpich Fix the two affected ports 2012-02-10 09:33:05 +00:00
ncs - update png to 1.5.10 2012-06-01 05:26:28 +00:00
netcdf - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
netcdf-ftn
netcdf3-ftn
netcdf4 - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
nifticlib - remove MD5 2011-07-03 13:22:24 +00:00
omnetpp - update png to 1.5.10 2012-06-01 05:26:28 +00:00
openbabel - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
ovt - update png to 1.5.10 2012-06-01 05:26:28 +00:00
p5-Algorithm-SVMLight - Assign clsung's p5- ports to perl@ 2012-05-01 01:47:10 +00:00
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or 2012-06-10 18:42:48 +00:00
p5-Chemistry-File-SLN - Replace ../../authors in MASTER_SITE_SUBDIR with CPAN:CPANID macro. 2011-06-20 09:03:27 +00:00
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol - remove MD5 2011-07-03 13:22:24 +00:00
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.21 2012-02-08 07:25:19 +00:00
p5-Geo-Coordinates-Converter At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB - remove MD5 2011-07-03 13:22:24 +00:00
p5-Geo-WebService-Elevation-USGS - Update to 0.010 2012-01-07 17:37:32 +00:00
p5-PerlMol
p5-Physics-Unit - Update to 0.53 2012-05-26 07:29:57 +00:00
paje - fix build with gcc46 2012-01-14 09:14:53 +00:00
paraview - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
peekabot - update png to 1.5.10 2012-06-01 05:26:28 +00:00
pnetcdf
psi3 adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
psychopy - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-biolccc Update to 1.4.0 2012-05-13 12:20:54 +00:00
py-DendroPy Update to 3.11.0 2012-04-14 18:41:27 +00:00
py-h5py - remove MD5 2011-07-03 13:22:24 +00:00
py-hcluster - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-mdp
py-mlpy At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-netCDF4 - Update to 0.9.9 2012-03-06 06:32:28 +00:00
py-obspy-core - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-obspy.db - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-obspy.gse2 - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-obspy.imaging - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-obspy.iris - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-obspy.mseed - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-obspy.signal - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-obspy.taup - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-obspy.wav - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-obspy.xseed - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-openbabel - remove MD5 2011-07-03 13:22:24 +00:00
py-paida - remove MD5 2011-07-03 13:22:24 +00:00
py-pydicom - remove MD5 2011-07-03 13:22:24 +00:00
py-scimath At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-scipy - Update to 0.10.1 2012-05-23 07:48:47 +00:00
py-ws2300
pybrain - remove MD5 2011-07-03 13:22:24 +00:00
pycdf At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
pynn - Update to 0.7.3 2012-04-11 07:17:21 +00:00
qcl Remove more tags from pkg-descr files fo the form: 2011-10-24 04:17:37 +00:00
qtresistors - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
R-cran-AMORE - update math/R-cran-psych to 1.2.1 [1] 2012-05-04 20:56:15 +00:00
R-cran-bayesm - update math/R-cran-psych to 1.2.1 [1] 2012-05-04 20:56:15 +00:00
R-cran-DCluster - update math/R-cran-psych to 1.2.1 [1] 2012-05-04 20:56:15 +00:00
R-cran-e1071 - update math/R-cran-psych to 1.2.1 [1] 2012-05-04 20:56:15 +00:00
R-cran-eco - update math/R-cran-psych to 1.2.1 [1] 2012-05-04 20:56:15 +00:00
R-cran-Epi - update math/R-cran-psych to 1.2.1 [1] 2012-05-04 20:56:15 +00:00
R-cran-epicalc - update math/R-cran-psych to 1.2.1 [1] 2012-05-04 20:56:15 +00:00
R-cran-snow - update math/R-cran-psych to 1.2.1 [1] 2012-05-04 20:56:15 +00:00
R-cran-som - update math/R-cran-psych to 1.2.1 [1] 2012-05-04 20:56:15 +00:00
ruby-dcl - update png to 1.5.10 2012-06-01 05:26:28 +00:00
ruby-gphys - update png to 1.5.10 2012-06-01 05:26:28 +00:00
ruby-netcdf - update to 0.6.6 2012-03-08 04:34:40 +00:00
rubygem-ai4r
silo - update png to 1.5.10 2012-06-01 05:26:28 +00:00
simlib - remove MD5 2011-07-03 13:22:24 +00:00
step - Convert USE_QT_VER=4 and QT_COMPONETS to USE_QT4 2012-06-06 06:44:37 +00:00
svmlight Fix fetch. 2011-07-08 04:07:55 +00:00
szip - Update distinfo because distfile was rerolled upstream [1] 2012-02-04 07:44:50 +00:00
udunits - Remove unnecessary USE_PERL5 2012-05-06 09:35:33 +00:00
v_sim - update png to 1.5.10 2012-06-01 05:26:28 +00:00
veusz - update png to 1.5.10 2012-06-01 05:26:28 +00:00
vis5d+ - update png to 1.5.10 2012-06-01 05:26:28 +00:00
vmd Update to 1.9.1. 2012-04-23 04:48:03 +00:00
x11iraf Register CONFLICTS 2012-06-11 09:52:17 +00:00
xmakemol Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since 2011-08-11 19:20:17 +00:00
xmds The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
Makefile - Add a new port: science/R-cran-som 2012-04-19 12:43:14 +00:00