kpriv/freebsd-ports
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity
freebsd-ports/biology
History
Rene Ladan 0786acb315 Remove expired ports: 
Adjusted for ports rescued since r534032

2020-05-05 audio/festvox-czech: Broken for more than 6 months
2020-05-05 audio/gkrellmvolume2: Broken for more than 6 months
2020-05-05 audio/mixmos: Broken for more than 6 months
2020-05-05 audio/mma: Broken for more than 6 months
2020-05-05 audio/pd-cyclone: Broken for more than 6 months
2020-05-05 audio/shorten: Broken for more than 6 months
2020-05-05 audio/taglib-sharp: Broken for more than 6 months
2020-05-05 audio/xhippo: Broken for more than 6 months
2020-05-05 biology/consed: Broken for more than 6 months
2020-05-05 biology/plinkseq: Broken for more than 6 months
2020-05-05 biology/seqtools: Broken for more than 6 months
2020-05-05 biology/t_coffee: Broken for more than 6 months
2020-05-05 biology/ugene: Broken for more than 6 months
2020-05-05 comms/ath3k-firmware: Broken for more than 6 months
2020-05-05 comms/geoid: Broken for more than 6 months
2020-05-05 comms/jerm: Broken for more than 6 months
2020-05-05 comms/yaac: Broken for more than 6 months
2020-05-05 converters/dumpasn1: Broken for more than 6 months
2020-05-05 databases/elixir-exredis: Broken for more than 6 months
2020-05-05 databases/hamsterdb: Broken for more than 6 months
2020-05-05 databases/memcacheq: Broken for more than 6 months
2020-05-05 databases/mysql++1: Broken for more than 6 months
2020-05-05 databases/mysql++3: Broken for more than 6 months
2020-05-05 databases/mysql2odbc: Broken for more than 6 months
2020-05-05 databases/mysqlidxchk: Broken for more than 6 months
2020-05-05 databases/p5-DBIx-Ease: Broken for more than 6 months
2020-05-05 databases/p5-DMOZ-ParseRDF: Broken for more than 6 months
2020-05-05 databases/pear-DoctrineORM: Broken for more than 6 months
2020-05-05 databases/pear-MDB2_Driver_mysql: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_DBQuery: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_DBTable: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_DataObject: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_MDB2: Broken for more than 6 months
2020-05-05 databases/pgagent: Broken for more than 6 months
2020-05-05 databases/useracc: Broken for more than 6 months
2020-05-05 deskutils/devd-notifier: Broken for more than 6 months
2020-05-05 deskutils/sugarcrm: Broken for more than 6 months
2020-05-05 deskutils/tine20: Broken for more than 6 months
2020-05-05 deskutils/tomboy-plugin-latex: Broken for more than 6 months
2020-05-05 deskutils/tomboy-plugin-todo: Broken for more than 6 months
2020-05-05 deskutils/wyrd: Broken for more than 6 months
2020-05-05 deskutils/xrolo: 64-bit unsupported
2020-05-05 devel/autodist: Broken for more than 6 months
2020-05-05 devel/bouml-doc: Broken for more than 6 months
2020-05-05 devel/cobf: Broken for more than 6 months
2020-05-05 devel/djgpp-crx: Broken for more than 6 months
2020-05-05 devel/elfrc: Broken for more than 6 months
2020-05-05 devel/frink: Broken for more than 6 months
2020-05-05 devel/gogland-eap: Broken for more than 6 months
2020-05-05 devel/hive: Broken for more than 6 months
2020-04-01 devel/hs-bytestring-nums: No releases since 2012
2020-05-05 devel/iz: Broken for more than 6 months
2020-05-05 devel/jfrog-cli: Broken for more than 6 months
2020-05-05 devel/libcfg: Broken for more than 6 months
2020-05-05 devel/libdispatch: Broken for more than 6 months
2020-05-05 devel/libjson++: Broken for more than 6 months
2020-05-05 devel/libmonetra: Broken for more than 6 months
2020-05-05 devel/libol: Broken for more than 6 months
2020-05-05 devel/libserver: Broken for more than 6 months
2020-05-05 devel/lua-MessagePack: Broken for more than 6 months
2020-05-05 devel/mercurialeclipse: Broken for more than 6 months
2020-05-05 devel/mime: Broken for more than 6 months
2020-05-05 devel/motor: Broken for more than 6 months
2020-05-05 devel/mq4cpp: Broken for more than 6 months
2020-05-05 devel/myrepos: Broken for more than 6 months
2020-05-05 devel/notify-sharp: Broken for more than 6 months
2020-05-05 devel/oozie: Broken for more than 6 months
2020-05-05 devel/p5-Cdk: Broken for more than 6 months
2020-05-05 devel/p5-Data-Average: Broken for more than 6 months
2020-05-05 devel/p5-Range-String: Broken for more than 6 months
2020-05-05 devel/p5-Shape: Broken for more than 6 months
2020-05-05 devel/pear-PHP_CodeBrowser: Broken for more than 6 months
2020-05-05 devel/pear-PHP_Depend: Broken for more than 6 months
2020-05-05 devel/pear-PHP_PMD: Broken for more than 6 months
2020-05-05 devel/pear-TheSeer_phpDox: Broken for more than 6 months
2020-05-05 devel/picp: Broken for more than 6 months
2020-05-05 devel/pig: Broken for more than 6 months
2020-05-05 devel/pty: Broken for more than 6 months
2020-05-05 devel/py-libiocage: Broken for more than 6 months
2020-05-05 devel/py-lock_file: Broken for more than 6 months
2020-05-05 devel/py-pyev: Broken for more than 6 months
2020-05-05 devel/rpm-spec-mode.el: Broken for more than 6 months
2020-05-05 devel/simple_components: Broken for more than 6 months
2020-05-05 devel/tcloo: Tcl/Tk 8.5 is nearing EOL, please consider porting to Tcl/Tk 8.6
2020-05-05 devel/tkmerge: Broken for more than 6 months
2020-05-05 devel/toh: Broken for more than 6 months
2020-05-05 devel/visualparadigm: Broken for more than 6 months
2020-05-05 dns/autotrust: Broken for more than 6 months
2020-05-05 dns/gdnsd: Broken for more than 6 months
2020-05-05 dns/p5-Stanford-DNSserver: Broken for more than 6 months
2020-05-05 dns/zonecheck: Broken for more than 6 months
2020-05-05 editors/omegaT: Broken for more than 6 months
2020-05-05 finance/cbb: Broken for more than 6 months
2020-05-05 ftp/llnlxdir: Broken for more than 6 months
2020-05-05 ftp/llnlxftp: Broken for more than 6 months
2020-05-05 games/adom: Broken for more than 6 months
2020-05-05 games/bsdrain: Broken for more than 6 months
2020-05-05 games/bunnysay: Broken for more than 6 months
2020-05-05 games/castlevox: Broken for more than 6 months
2020-05-05 games/gnarr: Broken for more than 6 months
2020-05-05 games/hohlin: Broken for more than 6 months
2020-05-05 games/hoichess: Broken for more than 6 months
2020-05-05 games/kajaani-kombat: Broken for more than 6 months
2020-05-05 games/linux-enemyterritory-jaymod-21: Broken for more than 6 months
2020-05-05 games/linux-enemyterritory-omni-bot: Broken for more than 6 months
2020-05-05 games/linux-enemyterritory-omni-bot-0660: Broken for more than 6 months
2020-05-05 games/nadar: Broken for more than 6 months
2020-05-05 games/nxengine: Broken for more than 6 months
2020-05-05 games/oneko: Broken for more than 6 months
2020-05-05 games/seahaven: Broken for more than 6 months
2020-05-05 games/sudoku_solver: Broken for more than 6 months
2020-05-05 games/tetrons: Broken for more than 6 months
2020-05-05 games/xpenguins: Broken for more than 6 months
2020-05-05 games/xvmahjongg: 64-bit unsupported
2020-05-05 games/xvmines: 64-bit unsupported
2020-05-05 graphics/EZWGL: Broken for more than 6 months
2020-05-05 graphics/kix-kmod: Broken for more than 6 months
2020-05-05 graphics/mhgui: Broken for more than 6 months
2020-05-05 graphics/mmrecover: Broken for more than 6 months
2020-05-05 hungarian/hu-phone: Broken for more than 6 months
2020-05-05 hungarian/hu-zipcodes: Broken for more than 6 months
2020-05-05 irc/charybdis: Broken for more than 6 months
2020-05-05 irc/fisg: Broken for more than 6 months
2020-05-05 irc/ircd-ru: Broken for more than 6 months
2020-05-05 irc/ircservices: Broken for more than 6 months
2020-05-05 irc/nethirc: Broken for more than 6 months
2020-05-05 irc/ratbox-services: Broken for more than 6 months
2020-05-05 irc/roxirc: Broken for more than 6 months
2020-05-05 japanese/jstrings: Broken for more than 6 months
2020-05-05 japanese/mg: Broken for more than 6 months
2020-05-05 japanese/ming: Broken for more than 6 months
2020-05-05 japanese/t2ps: Broken for more than 6 months
2020-05-05 java/castor: Broken for more than 6 months
2020-05-05 java/eclipse-windowbuilder: Broken for more than 6 months
2020-05-05 java/jdbcpool: Broken for more than 6 months
2020-05-05 java/jomp: Broken for more than 6 months
2020-05-05 java/langspec: Broken for more than 6 months
2020-05-05 java/xdoclet: Broken for more than 6 months
2020-05-05 korean/xpdf: Broken for more than 6 months
2020-05-05 lang/afnix: Broken for more than 6 months
2020-05-05 lang/elan: Broken for more than 6 months
2020-05-05 lang/gnatcross-aarch64: Broken for more than 6 months
2020-05-05 lang/hope: Broken for more than 6 months
2020-05-05 lang/hugs: Broken for more than 6 months
2020-05-05 lang/ici: Broken for more than 6 months
2020-05-05 lang/icon: Broken for more than 6 months
2020-05-05 lang/newlisp-devel: Broken for more than 6 months
2020-05-05 lang/ohugs: Broken for more than 6 months
2020-05-05 lang/opendylan: Broken for more than 6 months
2020-05-05 lang/phc: Broken for more than 6 months
2020-05-05 lang/starlogo: Broken for more than 6 months
2020-05-05 lang/yap: Broken for more than 6 months
2020-05-05 lang/yap-devel: Broken for more than 6 months
2020-05-05 mail/chk4mail: Broken for more than 6 months
2020-05-05 mail/librfc822: Broken for more than 6 months
2020-05-05 mail/mailmgr: Broken for more than 6 months
2020-05-05 mail/mreport: Broken for more than 6 months
2020-05-05 mail/msgconvert: Broken for more than 6 months
2020-05-05 mail/nullpop: Broken for more than 6 months
2020-05-05 mail/p5-Mail-MailStats: Broken for more than 6 months
2020-05-05 mail/poppassd: Broken for more than 6 months
2020-05-05 mail/prayer: Broken for more than 6 months
2020-05-05 mail/py-cyruslib: Broken for more than 6 months
2020-05-05 mail/qmail-auditor: Broken for more than 6 months
2020-05-05 mail/qmailmrtg7: Broken for more than 6 months
2020-05-05 mail/qmqtool: Broken for more than 6 months
2020-05-05 mail/relaydb: Broken for more than 6 months
2020-05-05 mail/rftp: Broken for more than 6 months
2020-05-05 mail/smtp-gated: Broken for more than 6 months
2020-05-05 mail/spamoracle: Broken for more than 6 months
2020-05-05 math/calctool: 64-bit unsupported
2020-05-05 math/diehard: Broken for more than 6 months
2020-05-05 math/e: Broken for more than 6 months
2020-05-05 math/entropy: Broken for more than 6 months
2020-05-05 math/liblbfgs: Broken for more than 6 months
2020-05-05 math/libtsnnls: Broken for more than 6 months
2020-05-05 math/ltl: Broken for more than 6 months
2020-05-05 math/naturalmath: Broken for more than 6 months
2020-05-05 math/proofgeneral: Broken for more than 6 months
2020-05-05 math/py-basemap-data: Broken for more than 6 months
2020-05-05 math/py-igakit: Broken for more than 6 months
2020-05-05 math/py-rapi: Broken for more than 6 months
2020-05-05 math/sfst: Broken for more than 6 months
2020-05-05 math/truthtable: Broken for more than 6 months
2020-05-05 math/wingz3: Broken for more than 6 months
2020-05-05 math/x12arima: Broken for more than 6 months
2020-05-05 math/xppaut: Broken for more than 6 months
2020-05-05 misc/achievo: Broken for more than 6 months
2020-05-05 misc/auto-multiple-choice: Broken for more than 6 months
2020-05-05 misc/display: Broken for more than 6 months
2020-05-05 misc/esniper: Broken for more than 6 months
2020-05-05 misc/free42-skins: Broken for more than 6 months
2020-05-05 misc/libisocodes: Broken for more than 6 months
2020-05-05 misc/loop: Broken for more than 6 months
2020-05-05 misc/p5-Norge: Broken for more than 6 months
2020-05-05 misc/pantry: Broken for more than 6 months
2020-05-05 misc/phraze: Broken for more than 6 months
2020-05-05 misc/podsleuth: Broken for more than 6 months
2020-05-05 misc/py-osd: Broken for more than 6 months
2020-05-05 misc/rfc: Broken for more than 6 months
2020-05-05 misc/spamcalc: Broken for more than 6 months
2020-05-05 misc/us-zipcodes: Broken for more than 6 months
2020-05-05 misc/xtypo: Broken for more than 6 months
2020-05-05 misc/yaunc: Broken for more than 6 months
2020-05-05 multimedia/clipgrab: Broken for more than 6 months
2020-05-05 multimedia/libsmacker: Broken for more than 6 months
2020-05-05 multimedia/lxdvdrip: Broken for more than 6 months
2020-05-05 multimedia/mjpg-streamer: Broken for more than 6 months
2020-05-05 multimedia/vcdpad: Broken for more than 6 months
2020-05-05 net/erlang-xmlrpc: Broken for more than 6 months
2020-05-05 net/etrace: Broken for more than 6 months
2020-05-05 net/fonulator: Broken for more than 6 months
2020-05-05 net/gkrellmwireless2: Broken for more than 6 months
2020-05-05 net/howl: Broken for more than 6 months
2020-05-05 net/libp0f: Broken for more than 6 months
2020-05-05 net/libsocket++: Broken for more than 6 months
2020-05-05 net/ltm: Broken for more than 6 months
2020-05-05 net/lvwimax: Broken for more than 6 months
2020-05-05 net/mono-zeroconf: Broken for more than 6 months
2020-05-05 net/nph: Broken for more than 6 months
2020-05-05 net/p5-Net-RawSock: Broken for more than 6 months
2020-05-05 net/passlogd: Broken for more than 6 months
2020-05-05 net/phamm: Broken for more than 6 months
2020-05-05 net/pim6-tools: Broken for more than 6 months
2020-05-05 net/pim6dd: Broken for more than 6 months
2020-05-05 net/pim6sd: Broken for more than 6 months
2020-05-05 net/proxy-connect: Broken for more than 6 months
2020-05-05 net/rtpbreak: Broken for more than 6 months
2020-05-05 net/s3ql: Broken for more than 6 months
2020-05-05 net/scnc: Broken for more than 6 months
2020-05-05 net/sip_scenario: Broken for more than 6 months
2020-05-05 net/slurm: Broken for more than 6 months
2020-05-05 net/ssmping: Broken for more than 6 months
2020-05-05 net/tcpdstat: Broken for more than 6 months
2020-05-05 net/uplog: Broken for more than 6 months
2020-05-05 net/vblade: Broken for more than 6 months
2020-05-05 net/wizd: Broken for more than 6 months
2020-05-05 net/wmnetload: Broken for more than 6 months
2020-05-05 net/wmnetmon: Broken for more than 6 months
2020-05-05 net/wmpiki: Broken for more than 6 months
2020-05-05 net/xipmsg: Broken for more than 6 months
2020-05-05 net-im/chattahoochie: Broken for more than 6 months
2020-05-05 net-im/jitsi: Broken for more than 6 months
2020-05-05 net-im/mu-conference: Broken for more than 6 months
2020-05-05 net-im/p5-Jabber-Connection: Broken for more than 6 months
2020-05-05 net-im/p5-Net-ICQ2000: Broken for more than 6 months
2020-05-05 net-im/pidgin-guifications: Broken for more than 6 months
2020-05-05 net-im/pidgin-osd: Broken for more than 6 months
2020-05-05 net-im/yoono: Broken for more than 6 months
2020-05-05 net-mgmt/arpalert: Broken for more than 6 months
2020-05-05 net-mgmt/nagios-check_memcached_paranoid: Broken for more than 6 months
2020-05-05 net-mgmt/netwox: Broken for more than 6 months
2020-05-05 net-mgmt/nstreams: Broken for more than 6 months
2020-05-05 net-mgmt/p5-GRNOC-Config: Broken for more than 6 months
2020-05-05 net-mgmt/p5-GRNOC-TL1: Broken for more than 6 months
2020-05-05 net-mgmt/scli: Broken for more than 6 months
2020-05-05 net-mgmt/snmp++: Broken for more than 6 months
2020-05-05 net-mgmt/victorops-nagios: Broken for more than 6 months
2020-05-05 net-p2p/libpdtp: Broken for more than 6 months
2020-05-05 net-p2p/squall: Broken for more than 6 months
2020-05-05 news/crashmail: Broken for more than 6 months
2020-05-05 news/sn: Broken for more than 6 months
2020-05-05 news/xrn: Broken for more than 6 months
2020-05-05 ports-mgmt/managepkg: Broken for more than 6 months
2020-05-05 portuguese/irpf-pt_BR: Broken for more than 6 months
2020-05-05 print/foxitreader: Broken for more than 6 months
2020-05-05 print/pdfcube: Broken for more than 6 months
2020-05-05 print/pmw: Broken for more than 6 months
2020-05-05 print/rprint: Broken for more than 6 months
2020-05-05 russian/p5-cyrillic: Broken for more than 6 months
2020-05-05 russian/tidyup-mail: Broken for more than 6 months
2020-05-05 science/abinit: Broken for more than 6 months
2020-05-05 science/atom: Broken for more than 6 months
2020-05-05 science/cp2k: Broken for more than 6 months
2020-05-05 science/esys-particle: Broken for more than 6 months
2020-05-05 science/openmx: Broken for more than 6 months
2020-05-05 science/p5-Geo-ReadGRIB: Broken for more than 6 months
2020-05-05 science/py-tensorflow-estimator: Broken for more than 6 months
2020-05-05 security/firewalk: Broken for more than 6 months
2020-05-05 security/hmap: Broken for more than 6 months
2020-05-05 security/ipfcount: Broken for more than 6 months
2020-05-05 security/libbf: Broken for more than 6 months
2020-05-05 security/log2timeline: Broken for more than 6 months
2020-05-05 security/opencdk: Broken for more than 6 months
2020-05-05 security/pad: Broken for more than 6 months
2020-05-05 security/pam_fprint: Broken for more than 6 months
2020-05-05 security/pam_per_user: Broken for more than 6 months
2020-05-05 security/razorback-dispatcher: Broken for more than 6 months
2020-05-05 security/ruby-camellia: Broken for more than 6 months
2020-05-05 security/scanhill: Broken for more than 6 months
2020-05-05 security/sinfp: Broken for more than 6 months
2020-05-05 security/ssh_askpass_gtk2: Broken for more than 6 months
2020-05-05 security/subweb: Broken for more than 6 months
2020-05-05 security/unssh: Broken for more than 6 months
2020-05-05 security/xspy: Broken for more than 6 months
2020-05-05 shells/osh: Broken for more than 6 months
2020-05-05 shells/shell-include: Broken for more than 6 months
2020-05-05 sysutils/abgx360gui: Broken for more than 6 months
2020-05-05 sysutils/autojump: Broken for more than 6 months
2020-05-05 sysutils/backupchecker: Broken for more than 6 months
2020-05-05 sysutils/cdf: Broken for more than 6 months
2020-05-05 sysutils/cdls: Broken for more than 6 months
2020-05-05 sysutils/circonus-agent: Broken for more than 6 months
2020-05-05 sysutils/cloop-utils: Broken for more than 6 months
2020-05-05 sysutils/confman: Broken for more than 6 months
2020-05-05 sysutils/detach: Broken for more than 6 months
2020-05-05 sysutils/disktool: 64-bit unsupported
2020-05-05 sysutils/downtime: Broken for more than 6 months
2020-05-05 sysutils/fusefs-fusexmp_fh: Broken for more than 6 months
2020-05-05 sysutils/fusefs-gunzip: Broken for more than 6 months
2020-05-05 sysutils/goss: Broken for more than 6 months
2020-05-05 sysutils/gpte: Broken for more than 6 months
2020-05-05 sysutils/hidesvn: Broken for more than 6 months
2020-05-05 sysutils/hoz: Broken for more than 6 months
2020-05-05 sysutils/intel-qcu: Broken for more than 6 months
2020-05-05 sysutils/iogen: Broken for more than 6 months
2020-05-05 sysutils/jailctl: Broken for more than 6 months
2020-05-05 sysutils/jx: Broken for more than 6 months
2020-05-05 sysutils/linux-crashplan: Broken for more than 6 months
2020-05-05 sysutils/mkfile: Broken for more than 6 months
2020-05-05 sysutils/mpiexec: Broken for more than 6 months
2020-05-05 sysutils/nfsping: Broken for more than 6 months
2020-05-05 sysutils/phantom: Broken for more than 6 months
2020-05-05 sysutils/ptools: Broken for more than 6 months
2020-05-05 sysutils/realsync: Broken for more than 6 months
2020-05-05 sysutils/rmonitor: Broken for more than 6 months
2020-05-05 sysutils/roottail: Broken for more than 6 months
2020-05-05 sysutils/sb16config: Broken for more than 6 months
2020-05-05 sysutils/sbase: Broken for more than 6 months
2020-05-05 sysutils/setquota: Broken for more than 6 months
2020-05-05 sysutils/sortu: Broken for more than 6 months
2020-05-05 sysutils/stmpclean: Broken for more than 6 months
2020-05-05 sysutils/tmate-slave: Broken for more than 6 months
2020-05-05 sysutils/tss: Broken for more than 6 months
2020-05-05 sysutils/vstrip: Broken for more than 6 months
2020-05-05 sysutils/watchdog: Broken for more than 6 months
2020-05-05 sysutils/wmbsdbatt: Broken for more than 6 months
2020-05-05 sysutils/wmcpuload: Broken for more than 6 months
2020-05-05 sysutils/wmcube: Broken for more than 6 months
2020-05-05 sysutils/wtail: Broken for more than 6 months
2020-05-05 textproc/csv2latex: Broken for more than 6 months
2020-05-05 textproc/da-hyphen: Broken for more than 6 months
2020-05-05 textproc/glark: Broken for more than 6 months
2020-05-05 textproc/html2tex: Broken for more than 6 months
2020-05-05 textproc/htmlsection: Broken for more than 6 months
2020-05-05 textproc/kenlm: Broken for more than 6 months
2020-05-05 textproc/libguess: Broken for more than 6 months
2020-05-05 textproc/libxml++26-reference: Broken for more than 6 months
2020-05-05 textproc/no-hunspell: Broken for more than 6 months
2020-05-05 textproc/p5-MARC: Broken for more than 6 months
2020-05-05 textproc/p5-texcount: Broken for more than 6 months
2020-05-05 textproc/pcrs: Broken for more than 6 months
2020-05-05 textproc/pear-Structures_DataGrid_DataSource_RSS: Broken for more than 6 months
2020-05-05 textproc/pear-Structures_DataGrid_DataSource_XML: Broken for more than 6 months
2020-05-05 textproc/permute: Broken for more than 6 months
2020-05-05 textproc/pocketreader: Broken for more than 6 months
2020-05-05 textproc/py-sgrep: Broken for more than 6 months
2020-05-05 textproc/rss2html: Broken for more than 6 months
2020-05-05 textproc/ruby-xmlparser: Broken for more than 6 months
2020-05-05 textproc/sv-hyphen: Broken for more than 6 months
2020-05-05 textproc/tclExpat: Broken for more than 6 months
2020-05-05 textproc/tex2im: Broken for more than 6 months
2020-05-05 textproc/topic: Broken for more than 6 months
2020-05-05 textproc/uz-hunspell: Broken for more than 6 months
2020-05-05 textproc/xmlprpr: Broken for more than 6 months
2020-05-05 www/ach: Broken for more than 6 months
2020-05-05 www/apache-forrest: Broken for more than 6 months
2020-05-05 www/apercu: Broken for more than 6 months
2020-05-05 www/cblog: Broken for more than 6 months
2020-05-05 www/drood: Broken for more than 6 months
2020-05-05 www/drraw: Broken for more than 6 months
2020-05-05 www/flood: Broken for more than 6 months
2020-05-05 www/grafana2: Broken for more than 6 months
2020-05-05 www/imgsizer: Broken for more than 6 months
2020-05-05 www/jdresolve: Broken for more than 6 months
2020-05-05 www/linkcheck: Broken for more than 6 months
2020-05-05 www/madsonic-standalone: Broken for more than 6 months
2020-05-05 www/mod_auth_external2: Broken for more than 6 months
2020-05-05 www/mod_chroot: Broken for more than 6 months
2020-05-05 www/mod_cvs2: Broken for more than 6 months
2020-05-05 www/mod_domaintree: Broken for more than 6 months
2020-05-05 www/mod_encoding: Broken for more than 6 months
2020-05-05 www/mod_flickr: Broken for more than 6 months
2020-05-05 www/mod_gzip2: Broken for more than 6 months
2020-05-05 www/mod_layout22: Broken for more than 6 months
2020-05-05 www/mod_proctitle: Broken for more than 6 months
2020-05-05 www/mod_tsa: Broken for more than 6 months
2020-05-05 www/mod_vhs: Broken for more than 6 months
2020-05-05 www/p5-AnyEvent-Mojo: Broken for more than 6 months
2020-05-05 www/p5-Apache-Gallery: Broken for more than 6 months
2020-05-05 www/p5-WWW-Google-Video: Broken for more than 6 months
2020-05-05 www/p5-WWW-Shorten-KUSO: Broken for more than 6 months
2020-05-05 www/p5-WWW-Shorten-isgd: Broken for more than 6 months
2020-05-05 www/photo_gallery: Broken for more than 6 months
2020-05-05 www/pwebstats: Broken for more than 6 months
2020-05-05 www/py-django-profiles: Broken for more than 6 months
2020-05-05 www/red5: Broken for more than 6 months
2020-05-05 www/redmine-sidebar_hide: Broken for more than 6 months
2020-05-05 www/rssowl: Broken for more than 6 months
2020-05-05 www/skytemplate: Broken for more than 6 months
2020-05-05 www/surfraw: Broken for more than 6 months
2020-05-05 www/sws: Broken for more than 6 months
2020-05-05 www/tickr: Broken for more than 6 months
2020-05-05 www/tinytinyhttpd: Broken for more than 6 months
2020-05-05 www/udmsearch: Broken for more than 6 months
2020-05-05 www/vee: Broken for more than 6 months
2020-05-05 www/webreport: Broken for more than 6 months
2020-05-05 www/webstats: Broken for more than 6 months
2020-05-05 www/www6to4: Broken for more than 6 months
2020-05-05 x11/deskpaint: Broken for more than 6 months
2020-05-05 x11/dmenu2: Broken for more than 6 months
2020-05-05 x11/gcb: Broken for more than 6 months
2020-05-05 x11/gpctool: Broken for more than 6 months
2020-05-05 x11/ipager: Broken for more than 6 months
2020-05-05 x11/keylaunch: Broken for more than 6 months
2020-05-05 x11/props: 64-bit unsupported
2020-05-05 x11/roxbg: Broken for more than 6 months
2020-05-05 x11/sisctrl: Broken for more than 6 months
2020-05-05 x11/wdm: Broken for more than 6 months
2020-05-05 x11/xaniroc: Broken for more than 6 months
2020-05-05 x11/xmove: Broken for more than 6 months
2020-05-05 x11/xnodecor: Broken for more than 6 months
2020-05-05 x11/xvattr: Broken for more than 6 months
2020-05-05 x11-clocks/tktz: Broken for more than 6 months
2020-05-05 x11-clocks/xtimer: Broken for more than 6 months
2020-05-05 x11-themes/gnome-icons-dropline-neu: Broken for more than 6 months
2020-05-05 x11-themes/gnome-icons-dropline-nou: Broken for more than 6 months
2020-05-05 x11-themes/gnome-icons-gion: Broken for more than 6 months
2020-05-05 x11-themes/gnome-icons-jini: Broken for more than 6 months
2020-05-05 x11-themes/gtk-aurora-engine: Broken for more than 6 months
2020-05-05 x11-themes/gtk-blueprint-engine: Broken for more than 6 months
2020-05-05 x11-themes/gtk-murrina-fancy-clearlooks: Broken for more than 6 months
2020-05-05 x11-themes/gtk-murrina-lightblue: Broken for more than 6 months
2020-05-05 x11-themes/gtk-murrine-themes: Broken for more than 6 months
2020-05-05 x11-themes/murrine-configurator: Broken for more than 6 months
2020-05-05 x11-themes/nimbus: Broken for more than 6 months
2020-05-05 x11-themes/openbox-themes: Broken for more than 6 months
2020-05-05 x11-themes/rezlooks: Broken for more than 6 months
2020-05-05 x11-themes/ubuntulooks: Broken for more than 6 months
2020-05-05 x11-toolkits/slingshot: 64-bit unsupported
2020-05-05 x11-toolkits/xview-clients: 64-bit unsupported
2020-05-05 x11-wm/fluxconf: Broken for more than 6 months
2020-05-05 x11-wm/ion: Broken for more than 6 months
2020-05-05 x11-wm/matwm2: Broken for more than 6 months
2020-05-05 x11-wm/nickleby: Broken for more than 6 months
2020-05-05 x11-wm/olvwm: 64-bit unsupported
2020-05-05 x11-wm/ratmenu: Broken for more than 6 months
2020-05-05 15:38:11 +00:00
..
abyss Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
artemis Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
avida biology/avida: unbreak on powerpc64 2019-10-23 16:25:10 +00:00
babel
bamtools devel/jsoncpp: Update 1.8.1 -> 1.9.2 2020-01-13 21:38:35 +00:00
bcftools math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
bedtools biology/bedtools: Upgrade to 2.29.2 2019-12-19 01:04:11 +00:00
biococoa Return theraven's ports to the pool after safekeeping his commit bit. 2020-03-05 20:49:05 +00:00
bolt-lmm Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
bowtie Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
bowtie2 Update devel/tbb to 2020.2 and bump dependent port's revisions 2020-04-01 14:14:51 +00:00
bwa
canu biology/canu: Upgrade to 2.0 2020-03-20 18:14:23 +00:00
cd-hit Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
cdbfasta
checkm biology/checkm: Update 1.0.17 -> 1.0.18 2019-08-19 08:25:29 +00:00
clustal-omega
clustalw
cufflinks biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89 2020-03-31 06:42:22 +00:00
cytoscape Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
ddocent Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
diamond biology/diamond: Update to version 0.9.32 2020-04-24 23:04:14 +00:00
dsr-pdb devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
emboss - update libgd to 2.3.0 2020-05-04 21:31:39 +00:00
exonerate
fasta Convert to UCL & cleanup pkg-message (categories a-c) 2019-08-13 16:00:39 +00:00
fasta3 Convert to UCL & cleanup pkg-message (categories a-c) 2019-08-13 16:00:39 +00:00
fastahack biology/fastahack: Upgrade to 1.0.0 2019-10-06 21:34:32 +00:00
fastdnaml
fastool
fastp biology/fastp: Upgrade to 0.20.1 2020-04-09 16:17:02 +00:00
fastqc biology/fastqc: Upgrade to 0.11.8 2019-09-21 02:44:54 +00:00
fasttree Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
fastx-toolkit
figtree New port: biology/figtree: Graphical viewer of phylogenetic trees 2019-02-03 21:14:38 +00:00
fluctuate
freebayes Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
garlic Add USES=xorg USES=gl, ports categories b 2019-11-04 21:08:20 +00:00
gatk biology/gatk: Update 4.1.4.1 -> 4.1.5.0 2020-03-04 08:47:55 +00:00
gcta biology/gcta: Genome-wide Complex Trait Analysis 2020-04-15 15:22:04 +00:00
gemma Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
gff2ps biology/gff2ps: update 0.98d to 0.98l 2018-12-19 17:34:29 +00:00
gmap Convert to UCL & cleanup pkg-message (categories a-c) 2019-08-13 16:00:39 +00:00
gperiodic - Update WWW 2020-01-19 09:30:22 +00:00
graphlan Deprecate a few ports 2020-02-23 15:25:53 +00:00
grappa
groopm Deprecate a few ports 2020-02-23 15:25:53 +00:00
haplohseq Deprecate some ports using deprecated version of python 2020-03-08 17:01:46 +00:00
hhsuite - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) 2020-04-19 09:49:02 +00:00
hisat2 New port: biology/hisat2: Program for mapping next-generation sequencing reads 2019-01-11 16:02:05 +00:00
hmmer biology/hmmer: update to 3.3 2020-01-29 05:55:12 +00:00
htslib
hyphy biology/hyphy: Update to version 2.5.12 2020-05-03 02:08:19 +00:00
igv Deprecate java/openjfx8-devel consumers 2020-03-19 09:33:13 +00:00
infernal biology/infernal: update to 1.1.3 2020-01-27 17:57:14 +00:00
iolib - Fix build in head i386 2019-04-01 19:33:15 +00:00
iqtree biology/iqtree: Update to version 2.0.4 2020-05-02 20:32:33 +00:00
jalview Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
jellyfish biology/jellyfish: Patch for clang 10 2020-03-07 19:25:54 +00:00
kallisto kallisto: Patch for build with GCC 2020-04-01 23:35:38 +00:00
lagan Convert to UCL & cleanup pkg-message (categories a-c) 2019-08-13 16:00:39 +00:00
lamarc
libbigwig New port: biology/libbigwig: C library for handling bigWig files (containing genomic data) 2019-07-11 17:05:22 +00:00
libgtextutils
libsbml Clean up Makefile 2020-02-08 19:01:40 +00:00
linux-foldingathome Update to 7.6.9 2020-04-19 10:09:56 +00:00
mafft
mapm3
migrate
minimap2 biology/minimap2: Upgrade to 2.17 2019-05-05 14:56:07 +00:00
molden Add USES=xorg USES=gl, ports categories b 2019-11-04 21:08:20 +00:00
mopac Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
mothur biology/mothur: Update 1.42.3 -> 1.43.0 2019-10-05 17:04:42 +00:00
mrbayes - Swap back from net/openmpi3 to net/openmpi 2020-04-21 21:47:57 +00:00
mummer Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
muscle biology/muscle: unbreak in -CURRENT 2020-01-17 16:49:03 +00:00
ncbi-blast+ biology/ncbi-blast+: Upgrade to 2.10.0 2019-12-26 16:21:17 +00:00
ncbi-cxx-toolkit Add USES=xorg USES=gl, ports categories b 2019-11-04 21:08:20 +00:00
ncbi-toolkit biologi/ncbi-toolkit: Remove dependency on libXp 2019-09-28 10:52:57 +00:00
ngs-sdk biology/ngs-sdk: Update 2.10.4 -> 2.10.5 2020-04-04 20:09:00 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene Update *_DEPENDS 2020-01-08 18:36:30 +00:00
p5-Bio-Cluster Update *_DEPENDS 2019-12-08 16:57:18 +00:00
p5-Bio-Coordinate Cosmetic change 2020-04-02 12:01:30 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL Add p5-Bio-DB-EMBL 1.7.4 2019-12-08 16:49:19 +00:00
p5-Bio-DB-NCBIHelper Add p5-Bio-DB-NCBIHelper 1.7.6 2019-12-08 16:49:25 +00:00
p5-Bio-FeatureIO Cosmetic change 2020-04-02 12:01:35 +00:00
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB Fix typo 2019-04-23 14:11:50 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF - Add LICENSE 2019-03-30 09:01:08 +00:00
p5-Bio-Variation Update to 1.7.5 2020-01-08 18:36:35 +00:00
p5-BioPerl Update to 1.007007 (1.7.7) 2019-12-08 16:57:23 +00:00
p5-BioPerl-Run Remove outdated CONFLICTS: p5-bioperl-run was renamed to p5-BioPerl-Run over 3 years ago 2020-01-08 18:36:40 +00:00
p5-transdecoder Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
p5-TrimGalore biology/p5-TrimGalore: Upgrade to 0.6.5 2019-11-26 16:20:12 +00:00
paml biology/paml: Update to version 4.9j 2019-11-22 15:32:40 +00:00
pbbam devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
pbcopper Mark BROKEN: fails to build 2020-03-10 14:17:19 +00:00
pbseqan biology/unanimity and dependencies: Flag as no longer open source 2019-11-24 15:53:00 +00:00
pear-merger
phrap
phred Convert to UCL & cleanup pkg-message (categories a-c) 2019-08-13 16:00:39 +00:00
phylip Add USES=xorg USES=gl, ports categories b 2019-11-04 21:08:20 +00:00
phyml - Swap back from net/openmpi3 to net/openmpi 2020-04-21 21:51:56 +00:00
plink biology/plink: Whole genome association analysis toolset 2020-05-04 23:01:57 +00:00
primer3
prodigal biology/prodigal: Eliminate a very old version from the portscout discovery process 2019-10-12 15:40:21 +00:00
prodigy-lig Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
protomol Add USES=xorg USES=gl, ports categories b 2019-11-04 21:08:20 +00:00
psi88 Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
py-biom-format Deprecate a few ports 2020-02-23 15:25:53 +00:00
py-biopython Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
py-bx-python biology/py-bx-python: Update 0.8.6 -> 0.8.8 2020-02-15 20:08:30 +00:00
py-cutadapt biology/py-cutadapt: Upgrade to 2.7 2019-11-23 14:45:53 +00:00
py-dnaio biology/py-dnaio: Upgrade to 0.4.1 2019-11-23 14:40:00 +00:00
py-fastTSNE Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
py-Genesis-PyAPI
py-gffutils biology/py-gffutils: Update 0.9 -> 0.10 2019-12-31 05:16:09 +00:00
py-gtfparse Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
py-loompy Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
py-macs2 biology/py-macs2: Upgrade to 2.2.7.1 2020-04-14 12:13:55 +00:00
py-multiqc biology/py-multiqc: Upgrade to 1.8 2019-11-26 16:25:08 +00:00
py-orange3-bioinformatics Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
py-orange3-single-cell Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
py-pyfaidx Bump a few PORTREVISIONs after r498529 2019-04-10 06:18:31 +00:00
py-pysam biology/py-pysam: Update 0.15.3 -> 0.15.4 2020-01-23 02:53:09 +00:00
py-xenaPython New port: biology/py-xenaPython: API for Xena Hub to access genetic information shared through the hub 2019-04-12 17:01:10 +00:00
pyfasta Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
python-nexus
rainbow Update WWW 2020-03-31 23:18:09 +00:00
recombine Fix after gets(3) retirement using gets_s(3). 2019-09-02 05:00:43 +00:00
ruby-bio biology/ruby-bio: remove expired optional dependency on textproc/ruby-xmlparser 2020-05-05 14:22:09 +00:00
rubygem-bio
samtools Convert to UCL & cleanup pkg-message (categories a-c) 2019-08-13 16:00:39 +00:00
seaview biology/seaview: Update version 5.0=>5.0.2 2020-03-22 16:54:04 +00:00
seqan
seqan-apps devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
seqan1 Fix some misspelled or duplicated LICENSE_* 2019-09-17 19:21:45 +00:00
seqio
seqtk
sim4
slclust
smithwaterman
stacks Bump PORTREVISION for ports depending on the canonical version of GCC 2019-07-26 20:46:53 +00:00
star biology/star: Upgrade to 2.7.3a 2020-04-09 12:43:03 +00:00
stringtie biology/stringtie: fix build on GCC architectures 2020-02-23 10:52:44 +00:00
tabixpp
tophat Deprecate some ports using deprecated version of python 2020-03-08 17:01:46 +00:00
treekin Fix math/openblas and bump dependent ports 2020-01-30 14:17:44 +00:00
treepuzzle
trimadap biology/trimadap: Mark only for amd64 and i386 2019-05-11 00:18:24 +00:00
trimmomatic Clean up after java/openjdk6 and java/openjdk6-jre removal 2019-11-26 21:46:12 +00:00
tRNAscan-SE biology/tRNAscan-SE: update to 2.0.5 2020-01-13 17:36:57 +00:00
vcflib
vcftools
velvet
viennarna - update libgd to 2.3.0 2020-05-04 21:31:39 +00:00
vsearch biology/vsearch: Upgrade to 2.14.2 2020-02-19 22:34:36 +00:00
wise a-b: Add missing USES={gnome,php,sdl,xorg} 2019-11-08 09:27:56 +00:00
Makefile Remove expired ports: 2020-05-05 15:38:11 +00:00