59a8ef603d
ChangeLog: https://github.com/stephaneguindon/phyml/compare/v3.3.20211118...v3.3.20211231 Remove patches already merged into upstream. Reported by: portscout
62 lines
1.4 KiB
Makefile
62 lines
1.4 KiB
Makefile
# Created by: ballen
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PORTNAME= phyml
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DISTVERSIONPREFIX= v
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DISTVERSION= 3.3.20211231
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PORTEPOCH= 1
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CATEGORIES= biology
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MAINTAINER= ports@FreeBSD.org
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COMMENT= Simple, fast, and accurate algorithm to estimate large phylogenies
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/COPYING
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USES= autoreconf libtool pkgconfig
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USE_GITHUB= yes
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GH_ACCOUNT= stephaneguindon
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GNU_CONFIGURE= yes
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CONFIGURE_ARGS= --disable-beagle --disable-native
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PLIST_FILES= bin/phyml${BIN_SUFFIX}
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PORTDOCS= *
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PORTEXAMPLES= *
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OPTIONS_DEFINE= DOCS EXAMPLES
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OPTIONS_RADIO= MPI
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OPTIONS_RADIO_MPI= MPICH OPENMPI
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MPICH_LIB_DEPENDS= libmpich.so:net/mpich
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MPICH_MAKE_ARGS= CC="${LOCALBASE}/bin/mpicc"
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OPENMPI_LIB_DEPENDS= libmpi.so:net/openmpi
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OPENMPI_MAKE_ARGS= CC="${LOCALBASE}/mpi/openmpi/bin/mpicc"
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.include <bsd.port.options.mk>
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.if ${PORT_OPTIONS:MMPICH} || ${PORT_OPTIONS:MOPENMPI}
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CONFIGURE_ARGS+= --enable-mpi
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BIN_SUFFIX= -mpi
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.else
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CONFIGURE_ARGS+= --disable-mpi
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BIN_SUFFIX= # none
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.endif
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post-patch:
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.if ${ARCH} != amd64 && ${ARCH} != i386
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@${REINPLACE_CMD} -e 's|VECTOR_FLAG=-march=native|dnl &|' ${WRKSRC}/configure.ac
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.endif
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@${REINPLACE_CMD} -e 's|malloc.h|stdlib.h|' ${WRKSRC}/src/utilities.h
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post-install-DOCS-on:
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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(cd ${WRKSRC}/doc && ${INSTALL_DATA} *.pdf \
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${STAGEDIR}${DOCSDIR})
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post-install-EXAMPLES-on:
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@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
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@(cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . \
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${STAGEDIR}${EXAMPLESDIR})
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.include <bsd.port.mk>
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