37 lines
1.3 KiB
Makefile
37 lines
1.3 KiB
Makefile
PORTNAME= ncbi-cxx-toolkit
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DISTVERSION= 22_0_0
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CATEGORIES= biology science devel
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MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2019/Mar_28_2019/
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DISTNAME= ncbi_cxx--${DISTVERSION}
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= NCBI C++ Toolkit
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LICENSE= PD
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LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE
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LIB_DEPENDS= liblmdb.so:databases/lmdb \
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libpcre.so:devel/pcre
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RUN_DEPENDS= bash:shells/bash
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USES= compiler:c++11-lang gmake mysql perl5 python shebangfix ssl xorg
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SHEBANG_FILES= src/app/blast/get_species_taxids.sh src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl src/app/winmasker/windowmasker_2.2.22_adapter.py
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USE_XORG= x11 xpm
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GNU_CONFIGURE= yes
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CONFIGURE_ARGS= --without-debug --with-dll --without-static
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post-install:
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# strip
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@${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD}
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@${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD}
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# remove an empty directory
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@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg
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# remove the conflicting file
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@${RM} ${STAGEDIR}${PREFIX}/lib/liblmdb.so
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# autoplist: thousands of files
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@cd ${STAGEDIR}${PREFIX} && \
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${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \
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${FIND} * -type f -or -type l >> ${TMPPLIST}
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.include <bsd.port.mk>
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