116 lines
3 KiB
Makefile
116 lines
3 KiB
Makefile
# ex:ts=8
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# New ports collection makefile for: embassy
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# Date created: 1.November.2004
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# Whom: Fernan Aguero <fernan@iib.unsamn.edu.ar>
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#
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# $FreeBSD$
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#
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PORTNAME= embassy
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PORTVERSION= 5.0.0
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CATEGORIES= biology
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MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/ \
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ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/
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DIST_SUBDIR= emboss
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MAINTAINER= fernan@iib.unsam.edu.ar
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COMMENT= A collection of contributed EMBOSS applications
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LIB_DEPENDS= nucleus.5:${PORTSDIR}/biology/emboss
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PREFIX?= ${LOCALBASE}/emboss
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NO_MTREE= yes
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USE_SUBMAKE= yes
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USE_ICONV= yes
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USE_GMAKE= yes
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GNU_CONFIGURE= yes
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USE_XORG= x11
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USE_MOTIF= yes
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USE_LDCONFIG= yes
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OPTIONS= DOMAINATRIX "Protein domain apps" on \
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DOMALIGN "Protein domain apps" on \
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DOMSEARCH "Protein domain apps" on \
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SIGNATURE "Protein domain apps" on \
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STRUCTURE "Protein domain apps" on \
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EMNU "EMBOSS simple menu" on \
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ESIM4 "Align cDNA/EST to genome" on \
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HMMER "HMM alignment and searches" on \
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MEME "Motif detection" on \
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MSE "A multiple sequence screen editor" on \
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MYEMBOSS "Examples for developers of EMBOSS apps" on \
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PHYLIP "Phylogeny inference" on \
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TOPO "Transmembrane display" on \
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VIENNA "RNA folding" on
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CONFIGURE_ENV+= CPPFLAGS="-I${PREFIX}/include -I${LOCALBASE}/include" \
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LDFLAGS="-L${PREFIX}/lib -L${LOCALBASE}/lib"
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EMBASSY_WRKDIR= ${WRKSRC}/EMBASSY
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DOMAINATRIX_VERSION= 0.1.0
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EMNU_VERSION= 1.05
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ESIM4_VERSION= 1.0.0
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HMMER_VERSION= 2.3.2
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MEME_VERSION= 0.1.0
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MSE_VERSION= 1.0.0
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TOPO_VERSION= 1.0.0
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PHYLIP_VERSION= 3.6b
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DOMALIGN_VERSION= 0.1.0
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DOMSEARCH_VERSION= 0.1.0
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SIGNATURE_VERSION= 0.1.0
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STRUCTURE_VERSION= 0.1.0
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MYEMBOSS_VERSION= 3.0.0
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VIENNA_VERSION= 1.6
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EMBASSY_APPS= DOMAINATRIX EMNU ESIM4 HMMER MEME MSE PHYLIP \
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TOPO DOMALIGN DOMSEARCH SIGNATURE STRUCTURE MYEMBOSS \
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VIENNA
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.include <bsd.port.pre.mk>
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.for app in ${EMBASSY_APPS}
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.if !defined(WITHOUT_${app})
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APPLIST+= ${app}
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${app}_WRKSRC= ${EMBASSY_WRKDIR}/${app}-${${app}_VERSION}
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${app}_DISTFILE=${app}-${${app}_VERSION}${EXTRACT_SUFX}
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DISTFILES+= ${${app}_DISTFILE}
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PLIST_${app}= ""
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.else
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PLIST_${app}= "@comment "
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.endif
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PLIST_SUB+= PLIST_${app}=${PLIST_${app}}
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.endfor
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do-extract:
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.for app in ${APPLIST}
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@ ${MKDIR} ${EMBASSY_WRKDIR}
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@ cd ${EMBASSY_WRKDIR} && ${EXTRACT_CMD} ${EXTRACT_BEFORE_ARGS} \
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${_DISTDIR}/${${app}_DISTFILE} ${EXTRACT_AFTER_ARGS}
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@ if [ `id -u` = 0 ]; then \
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${CHMOD} -R ug-s ${${app}_WRKSRC}; \
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${CHOWN} -R 0:0 ${${app}_WRKSRC}; \
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fi
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.endfor
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post-patch:
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@${FIND} ${WRKSRC} -name configure | ${XARGS} ${REINPLACE_CMD} -e 's|echo aout|echo elf|'
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do-configure:
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.for app in ${APPLIST}
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@ cd ${${app}_WRKSRC} && \
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${SETENV} ${CONFIGURE_ENV} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS}
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.endfor
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do-build:
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.for app in ${APPLIST}
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@ cd ${${app}_WRKSRC} && \
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${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS}
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.endfor
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do-install:
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.for app in ${APPLIST}
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@ cd ${${app}_WRKSRC} && \
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${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \
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${MAKE_ARGS} ${INSTALL_TARGET}
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.endfor
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.include <bsd.port.post.mk>
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