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Tobias C. Berner fa81a4f5f8 accessibility/at-spi2-core: update to 2.46.0 
What's new in at-spi2-core 2.46.0:
* Fix GetInterfaces documentation on org.a11y.atspi.Accessible
  interface.

What's new in at-spi2-core 2.45.91:
* Send device event controller events using the same signature as other
  events.
* Document the Accessible, Action, and Cache dbus interfaces.
* Fix license of atspi-gmain.c (#87).

What's new in at-spi2-core 2.45.90:
* xml: Add some documentation.
* xml: Fix event arguments.
* xml: Add some missing DeviceEventController methods.
* Bind the AT-SPI bus to the graphical session.
* Mark bus service as belonging to the session slice.
* Add ATSPI_ROLE_PUSH_BUTTON_MENU.
* Add an "announcement" event/signal to allow objects to send
  notifications (!63).
* Various code clean-ups and test improvements.

What's new in at-spi2-core 2.45.1:
* Atk and at-spi2-atk are now merged into this project.
* Now requires meson 0.56.2 and glib 2.67.4.
* at-spi2-atk: Expose the accessible hierarchy via dbus introspection.
* Properly escape the AT-SPI bus address; fixes warnings about the address
  not containing a colon (!55).
* Add a text value to AtspiValue, so that a value can expose a textual
  description, as in the new Atk value API.
* Add atspi_event_listener_register_with_app, to allow an event listener
  to be registered only for a given application (!52).

- accessibility/atk and accessibility/at-spi2-atk have been merged into
  accessibility/at-spi2-core

- accessibility/at-spi2-core: bump consumers of removed ports atk and at-spi2-atk

PR:		269704
Exp-run by:	antoine
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2023-03-02 06:23:10 +01:00
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abyss Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
ad2vcf Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
artemis Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
atac-seq biology/atac-seq: Drop biology/igv dep 2023-02-19 12:11:12 -06:00
augustus math/suitesparse*: bump PORTREVISION of dependant ports 2023-01-19 17:45:37 +01:00
avida Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
babel Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bamtools Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bamutil Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
barrnap biology/barrnap: Update descr 2022-11-24 19:12:18 -08:00
bbmap Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bcf-score biology/bcf-score: Bcftools plugins for GWAS-VCF summary statistics 2023-02-25 08:27:46 -06:00
bcftools biology/bcftools: Update to 1.17 2023-02-24 17:30:58 -06:00
bedtools Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bfc Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bio-mocha biology/bio-mocha: Update to 1.16 2023-01-05 17:21:03 -06:00
bioawk Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
biococoa Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
biolibc biology/biolibc: Update to 0.2.4 2022-12-11 14:06:23 -06:00
biolibc-tools biology/biolibc-tools: Update to 0.1.4.1 2022-12-13 18:11:56 -06:00
bioparser Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
biosig math/suitesparse*: bump PORTREVISION of dependant ports 2023-01-19 17:45:37 +01:00
biosoup biology/biosoup: Update g20201216 -> 0.10.0-2 2022-10-10 23:10:56 -07:00
biostar-tools Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bolt-lmm */*: bump libboost*.so libraries consumert after Boost upgrade 2023-01-16 22:32:07 +03:00
bowtie Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bowtie2 biology/bowtie2: Update to 2.5.1 2023-01-21 16:30:48 -06:00
bwa Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
canu Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
cd-hit Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
cdbfasta Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
checkm Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
clustal-omega Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
clustalw Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
cufflinks */*: bump libboost*.so libraries consumert after Boost upgrade 2023-01-16 22:32:07 +03:00
cytoscape biology/cytoscape: Broken on armv6, armv7 2022-12-10 23:41:04 -08:00
ddocent Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
diamond biology/diamond: Update to 2.1.3 2023-02-22 07:48:44 -04:00
dsr-pdb */*: bump libboost*.so libraries consumert after Boost upgrade 2023-01-16 22:32:07 +03:00
edlib Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
emboss biology/emboss: Ignore with mysql 8.0 2023-02-01 04:39:38 -06:00
erminej Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
exonerate Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fasda biology/fasda: Fast and simple differential analysis 2022-12-12 11:17:22 -06:00
fasta Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fasta3 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastahack Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastdnaml Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastool Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastp Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastq-trim biology/fastq-trim: Update to 0.1.2 2022-12-11 15:24:05 -06:00
fastqc Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fasttree Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastx-toolkit Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
figtree Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
flash Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fluctuate Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
freebayes biology/freebayes: Drop redundant tabixpp dep 2023-01-22 10:42:34 -06:00
garlic Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
gatk biology/gatk: Update 4.2.6.1 -> 4.3.0.0 2022-11-26 20:06:47 -08:00
gcta Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
gemma Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
generand Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
gff2ps Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
gffread Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
gmap Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
gperiodic accessibility/at-spi2-core: update to 2.46.0 2023-03-02 06:23:10 +01:00
graphlan Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
groopm */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
haplohseq */*: bump libboost*.so libraries consumert after Boost upgrade 2023-01-16 22:32:07 +03:00
hhsuite biology/hhsuite: Disable on 32-bit architectures following upstream advice 2022-10-01 11:16:04 -07:00
hisat2 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
hmmer biology/hmmer: Update to 3.3.2 2022-10-11 15:13:01 -05:00
htslib biology/htslib: Update to 1.17 2023-02-24 17:23:25 -06:00
hyphy biology/hyphy: Update to 2.5.47 2023-02-03 23:36:47 -04:00
igv biology/igv: Update 2.9.4 → 2.16.0 2023-02-19 23:20:49 -08:00
infernal biology/infernal: Update to 1.1.4 2022-10-12 11:15:54 +01:00
iolib Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
iqtree Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
jalview biology/jalview: Update 2.11.1.4 -> 2.11.2.5 2022-10-11 23:58:18 -07:00
jellyfish biology/jellyfish: Bump PORTREVISION for biology/htslib update 2023-01-05 19:24:44 -06:00
kallisto Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
kmcp all: Bump PORTREVISION after lang/go{119,120} update 2023-02-15 14:06:01 -05:00
lamarc biology/lamarc: Refactor after wxgtk28 removal 2022-12-31 04:54:58 +01:00
libbigwig Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
libcombine biology/libcombine: Update 0.2.19 -> 0.2.20 2022-12-08 03:11:24 -08:00
libgff Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
libgtextutils Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
libneurosim Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
libnuml Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
libsbml biology/libsbml: unbreak build after 18c6e18276 (+) 2023-01-18 17:47:24 +03:00
libsedml Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
linux-foldingathome Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
mafft Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
mapm3 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
megahit biology/megahit: Add cmake patch to respect ports build flags 2022-11-24 08:10:13 -06:00
metaeuk biology/metaeuk: Fix build on systems withour OpenMP enabled 2022-12-10 01:51:02 -08:00
migrate Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
minimap2 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
mmseqs2 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
molden Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
mothur Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
mrbayes Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
mummer Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
muscle Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
ncbi-blast+ devel/grpc: Update to 1.49.0 2022-10-03 10:14:06 +08:00
ncbi-cxx-toolkit graphics/proj: Update to 9.1.1 2023-01-18 15:48:50 +01:00
ncbi-entrez-direct all: Bump PORTREVISION after lang/go{119,120} update 2023-02-15 14:06:01 -05:00
ncbi-toolkit */*: Bump PORTREVISION for consumers of libunistring 2022-10-22 11:36:07 +02:00
ncbi-vdb Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
ngs-sdk Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-AcePerl Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-ASN1-EntrezGene Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Cluster Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Coordinate Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Das Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Das-Lite Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-DB-EMBL Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-DB-NCBIHelper Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-FeatureIO Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-GFF3 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Glite Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Graphics Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-MAGETAB Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-NEXUS Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Phylo Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-SCF Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Variation Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-BioPerl Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-BioPerl-Run Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-transdecoder biology/p5-transdecoder: Update to 5.7.0 2023-01-30 16:30:54 -06:00
p5-TrimGalore Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
paml biology/paml: Update to 4.10.6 2022-11-12 22:35:29 -04:00
pbbam biology/pbbam: Bump PORTREVISION for biology/htslib update 2023-01-05 19:25:09 -06:00
pbseqan Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
peak-classifier biology/peak-classifier: Update to 0.1.4-5 2022-12-11 14:09:20 -06:00
pear-merger Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
phrap Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
phred Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
phyml Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
picard-tools Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
plink Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
pooler biology/pooler: update to 1.86 2022-12-19 08:56:15 +01:00
primer3 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
prodigal Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
prodigy-lig biology/prodigy-lig: Update 1.0.0-3 -> 1.0.1 2023-01-23 00:17:38 -08:00
protomol Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
psi88 Remove WWW lines that have been moved into Makefiles 2022-09-08 17:46:38 +02:00
py-bcbio-gff */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-biom-format */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-biopython biology/py-biopython: Update to 1.80 2022-12-05 19:45:16 +08:00
py-biosig biology/py-biosig: New port: Library for reading and writing different biosignal data format 2022-12-30 00:32:02 -08:00
py-bx-python */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-crossmap */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-cutadapt */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-deeptools */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-deeptoolsintervals */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-dna-features-viewer */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-dnaio */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-ete3 */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-Genesis-PyAPI */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-gffutils */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-goatools */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-gtfparse */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-hits */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-libnuml Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
py-libsedml Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
py-loompy */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-macs2 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
py-mrcfile */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-multiqc */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-ont-fast5-api Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
py-orange3-bioinformatics */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-orange3-single-cell Revert: "all: deprecate ports depending on expired security/py-keyrings.alt" 2022-12-06 12:12:04 +01:00
py-pandas-charm */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-py2bit */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-pybigwig */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-pyfaidx */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-pyrodigal */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-pysam */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-PySCeS */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-python-libsbml */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-pywgsim */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-resdk Revert "Mk/Uses/python.mk: Fix USE_PYTHON=pep517: always compile and install bytecode" 2023-02-05 14:05:02 -05:00
py-scikit-bio */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-valerius biology/py-valerius: New port: Python bioinformatics tools 2022-10-03 21:06:22 -07:00
py-xenaPython */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
pyfasta */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
python-nexus */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
rainbow Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
rampler Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
readseq Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
recombine Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
rna-seq biology/rna-seq: Drop biology/igv dep 2023-02-19 12:10:17 -06:00
ruby-bio Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby 2023-01-14 17:08:33 -06:00
rubygem-bio Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby 2023-01-14 17:08:33 -06:00
rubygem-bio-executables Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby 2023-01-14 17:08:33 -06:00
rubygem-bio-old-biofetch-emulator Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby 2023-01-14 17:08:33 -06:00
rubygem-bio-shell Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby 2023-01-14 17:08:33 -06:00
sam2pairwise Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
samtools biology/samtools: Update to 1.17 2023-02-24 17:27:21 -06:00
scrm Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seaview Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqan Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqan-apps Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqan1 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqan3 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqio Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqkit all: Bump PORTREVISION after lang/go{119,120} update 2023-02-15 14:06:01 -05:00
seqtk Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
sigviewer Mk/Uses: always use colon for build/run suffix 2022-09-11 12:20:14 +02:00
sim4 Remove WWW lines that have been moved into Makefiles 2022-09-08 17:46:38 +02:00
slclust Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
smithwaterman Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
snpeff biology/snpeff: Update to 5.1 2022-12-19 12:50:00 -06:00
spoa Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
sra-tools Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
stacks Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
star biology/star: Bump PORTREVISION for biology/htslib update 2023-01-05 19:27:16 -06:00
stringtie Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
subread Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
tabixpp biology/tabixpp: Deprecate 2023-01-22 11:01:57 -06:00
taxonkit all: Bump PORTREVISION after lang/go{119,120} update 2023-02-15 14:06:01 -05:00
treekin Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
treepuzzle Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
trimadap Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
trimmomatic Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
tRNAscan-SE biology/tRNAscan-SE: Update to 2.0.11 2022-10-12 12:45:24 +01:00
ucsc-userapps Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
ugene Mk/Uses: always use colon for build/run suffix 2022-09-11 12:20:14 +02:00
unikmer all: Bump PORTREVISION after lang/go{119,120} update 2023-02-15 14:06:01 -05:00
vcf-split biology/vcf-split: Update to 0.1.5-4 2022-12-11 14:11:33 -06:00
vcf2hap Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
vcflib biology/vcflib: Update to 1.0.7 2023-02-09 09:35:32 -06:00
vcftools Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
velvet Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
viennarna Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
vsearch biology/vsearch: Update to 2.22.1 2022-09-21 11:24:14 -05:00
vt biology/vt: Bump PORTREVISION for biology/htslib update 2023-01-05 19:19:19 -06:00
wfa2-lib biology/wfa2-lib: Unbreak build on aarch64, probably others 2023-01-31 09:17:52 -06:00
wise Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
Makefile biology/bcf-score: Bcftools plugins for GWAS-VCF summary statistics 2023-02-25 08:27:46 -06:00