1d6516ce7c
The snow package provides support for simple parallel computing on a network of workstations using R. A master R process calls makeCluster to start a cluster of worker processes; the master process then uses functions such as clusterCall and clusterApply to execute R code on the worker processes and collect and return the results on the master. This framework supports many forms of "embarrassingly parallel" computations. Snow can use one of four communications mechanisms: sockets, PVM, MPI, or NetWorkSpaces (NWS). NWS support was provided by Steve Weston. PVM clusters use the rpvm package; MPI clusters use package Rmpi; NWS clusters use package nws. If pvm is used, then pvm must be started, either using a pvm console (e.g the pvm text console or the graphical xpvm console, both available with pvm) or from R using functions provided by rpvm. Similarly, LAM-MPI must be started, e.g. using lamboot, for MPI clusters that use Rmpi and LAM-MPI. If NWS is used, the NetWorkSpaces server must be running. SOCK clusters are the easiest approach for using snow on a single multi-core computer as they require no additional software. WWW: http://cran.r-project.org/web/packages/snow/
194 lines
4.6 KiB
Makefile
194 lines
4.6 KiB
Makefile
# $FreeBSD$
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#
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COMMENT = Scientific ports
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SUBDIR += 2d-rewriter
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SUBDIR += 2dhf
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SUBDIR += InsightToolkit
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SUBDIR += R-cran-AMORE
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SUBDIR += R-cran-DCluster
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SUBDIR += R-cran-Epi
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SUBDIR += R-cran-bayesm
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SUBDIR += R-cran-eco
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SUBDIR += R-cran-epicalc
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SUBDIR += R-cran-snow
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SUBDIR += abinit
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SUBDIR += afni
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SUBDIR += avogadro
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SUBDIR += bddsolve
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SUBDIR += bft
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SUBDIR += bodr
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SUBDIR += brian
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SUBDIR += buddy
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SUBDIR += cdcl
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SUBDIR += cdf
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SUBDIR += cdo
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SUBDIR += cgnslib
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SUBDIR += checkmol
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SUBDIR += chemical-mime-data
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SUBDIR += chemtool
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SUBDIR += chemtool-devel
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SUBDIR += clhep
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SUBDIR += colt
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SUBDIR += crf++
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SUBDIR += dcl
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SUBDIR += devisor
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SUBDIR += dtiquery
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SUBDIR += ecs
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SUBDIR += elmer-eio
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SUBDIR += elmer-hutiter
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SUBDIR += elmer-matc
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SUBDIR += elmer-meshgen2d
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SUBDIR += elmergrid
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SUBDIR += elmerpost
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SUBDIR += epte
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SUBDIR += euler
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SUBDIR += fastcap
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SUBDIR += fasthenry
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SUBDIR += felt
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SUBDIR += flounder
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SUBDIR += fvm
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SUBDIR += g3data
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SUBDIR += gamess
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SUBDIR += gchemutils
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SUBDIR += gdis
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SUBDIR += getdp
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SUBDIR += ghemical
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SUBDIR += ghmm
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SUBDIR += gnudatalanguage
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SUBDIR += gramps
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SUBDIR += gromacs
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SUBDIR += gsmc
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SUBDIR += gsystem
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SUBDIR += gtamsanalyzer
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SUBDIR += gwyddion
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SUBDIR += h5utils
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SUBDIR += harminv
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SUBDIR += hdf
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SUBDIR += hdf-java
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SUBDIR += hdf5
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SUBDIR += hdf5-18
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SUBDIR += hs-bio
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SUBDIR += ics
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SUBDIR += isaac-cfd
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SUBDIR += jmol
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SUBDIR += jstrack
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SUBDIR += kalzium
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SUBDIR += kmovisto
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SUBDIR += kst
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SUBDIR += kst2
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SUBDIR += lamprop
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SUBDIR += libctl
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SUBDIR += libghemical
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SUBDIR += libint
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SUBDIR += libkml
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SUBDIR += liblinear
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SUBDIR += liboglappth
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SUBDIR += libquantum
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SUBDIR += libsvm
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SUBDIR += libsvm-python
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SUBDIR += linsmith
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SUBDIR += massxpert
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SUBDIR += mayavi
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SUBDIR += mbdyn
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SUBDIR += mcstas
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SUBDIR += medit
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SUBDIR += meep
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SUBDIR += minc
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SUBDIR += minc2
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SUBDIR += mol2ps
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SUBDIR += mpb
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SUBDIR += mpqc
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SUBDIR += mpqc-mpich
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SUBDIR += ncs
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SUBDIR += netcdf
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SUBDIR += netcdf-ftn
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SUBDIR += netcdf3-ftn
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SUBDIR += netcdf4
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SUBDIR += nifticlib
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SUBDIR += omnetpp
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SUBDIR += openbabel
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SUBDIR += ovt
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SUBDIR += p5-Algorithm-SVMLight
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SUBDIR += p5-Chemistry-3DBuilder
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SUBDIR += p5-Chemistry-Bond-Find
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SUBDIR += p5-Chemistry-Canonicalize
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SUBDIR += p5-Chemistry-Elements
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SUBDIR += p5-Chemistry-File-MDLMol
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SUBDIR += p5-Chemistry-File-Mopac
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SUBDIR += p5-Chemistry-File-PDB
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SUBDIR += p5-Chemistry-File-SLN
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SUBDIR += p5-Chemistry-File-SMARTS
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SUBDIR += p5-Chemistry-File-SMILES
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SUBDIR += p5-Chemistry-File-VRML
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SUBDIR += p5-Chemistry-File-XYZ
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SUBDIR += p5-Chemistry-FormulaPattern
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SUBDIR += p5-Chemistry-InternalCoords
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SUBDIR += p5-Chemistry-Isotope
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SUBDIR += p5-Chemistry-MacroMol
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SUBDIR += p5-Chemistry-MidasPattern
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SUBDIR += p5-Chemistry-Mok
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SUBDIR += p5-Chemistry-Mol
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SUBDIR += p5-Chemistry-Pattern
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SUBDIR += p5-Chemistry-Reaction
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SUBDIR += p5-Chemistry-Ring
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SUBDIR += p5-Geo-BUFR
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SUBDIR += p5-Geo-Coordinates-Converter
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SUBDIR += p5-Geo-Coordinates-Converter-iArea
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SUBDIR += p5-Geo-ReadGRIB
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SUBDIR += p5-Geo-WebService-Elevation-USGS
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SUBDIR += p5-PerlMol
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SUBDIR += p5-Physics-Unit
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SUBDIR += paje
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SUBDIR += paraview
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SUBDIR += peekabot
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SUBDIR += pnetcdf
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SUBDIR += psi3
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SUBDIR += psychopy
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SUBDIR += py-DendroPy
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SUBDIR += py-biolccc
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SUBDIR += py-h5py
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SUBDIR += py-hcluster
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SUBDIR += py-mdp
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SUBDIR += py-mlpy
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SUBDIR += py-netCDF4
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SUBDIR += py-obspy-core
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SUBDIR += py-obspy.db
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SUBDIR += py-obspy.gse2
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SUBDIR += py-obspy.imaging
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SUBDIR += py-obspy.iris
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SUBDIR += py-obspy.mseed
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SUBDIR += py-obspy.signal
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SUBDIR += py-obspy.taup
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SUBDIR += py-obspy.wav
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SUBDIR += py-obspy.xseed
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SUBDIR += py-openbabel
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SUBDIR += py-paida
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SUBDIR += py-pydicom
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SUBDIR += py-scimath
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SUBDIR += py-scipy
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SUBDIR += py-ws2300
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SUBDIR += pybrain
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SUBDIR += pycdf
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SUBDIR += pynn
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SUBDIR += qcl
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SUBDIR += qtresistors
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SUBDIR += ruby-dcl
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SUBDIR += ruby-gphys
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SUBDIR += rubygem-ai4r
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SUBDIR += silo
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SUBDIR += simlib
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SUBDIR += step
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SUBDIR += svmlight
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SUBDIR += szip
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SUBDIR += udunits
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SUBDIR += v_sim
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SUBDIR += veusz
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SUBDIR += vis5d+
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SUBDIR += vmd
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SUBDIR += x11iraf
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SUBDIR += xmakemol
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SUBDIR += xmds
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.include <bsd.port.subdir.mk>
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