10570c91c8
This patch brings EMBOSS up to date with the current version. i. The patches included in files/ are bugfixes for files in EMBOSS-3.0.0 that appeared after the release. They are documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README This is just 'for the record' so that we remember to remove these patches in the next update. ii. EMBOSS is now installed by default in LOCALBASE/emboss This is to avoid CONFLICTS with other ports that install files with the same names. Installing EMBOSS to another PREFIX is also possible. iii. now EMBASSY and EMBOSS both store their distfiles in the same DIST_SUBDIR iv. use built-in PKGMESSAGE and SUB_FILES instead of doing it the old (manual) way For EMBASSY: This update brings embassy in sync with the update of EMBOSS to 3.0.0. Things that changed from previous version of the port: i. embassy now installs by default in $LOCALBASE/emboss (the new default PREFIX for emboss as well). ii. changed DIST_SUBDIR so that all the distfiles are put together with emboss. This makes sense(TM) iii. incorporated new EMBASSY apps (this accounts for the changes in OPTIONS and pkg-plist) iv. removed obsoleted patches Finally, I included a sample text that could go in UPDATING. PR: 93053 Submitted by: Fernan Aguero <fernan (at) iib.unsam.edu.ar> (maintainer)
2071 lines
81 KiB
Text
2071 lines
81 KiB
Text
bin/aaindexextract
|
|
bin/abiview
|
|
bin/acdc
|
|
bin/acdpretty
|
|
bin/acdtable
|
|
bin/acdtrace
|
|
bin/acdvalid
|
|
bin/antigenic
|
|
bin/backtranseq
|
|
bin/banana
|
|
bin/biosed
|
|
bin/btwisted
|
|
bin/cai
|
|
bin/chaos
|
|
bin/charge
|
|
bin/checktrans
|
|
bin/chips
|
|
bin/cirdna
|
|
bin/codcmp
|
|
bin/codcopy
|
|
bin/coderet
|
|
bin/compseq
|
|
bin/cons
|
|
bin/cpgplot
|
|
bin/cpgreport
|
|
bin/cusp
|
|
bin/cutgextract
|
|
bin/dan
|
|
bin/cutseq
|
|
bin/dbiblast
|
|
bin/dbifasta
|
|
bin/dbiflat
|
|
bin/dbigcg
|
|
bin/dbxfasta
|
|
bin/dbxflat
|
|
bin/dbxgcg
|
|
bin/degapseq
|
|
bin/descseq
|
|
bin/diffseq
|
|
bin/digest
|
|
bin/distmat
|
|
bin/dotmatcher
|
|
bin/dotpath
|
|
bin/dottup
|
|
bin/dreg
|
|
bin/einverted
|
|
bin/embossdata
|
|
bin/embossversion
|
|
bin/emma
|
|
bin/emowse
|
|
bin/entret
|
|
bin/epestfind
|
|
bin/eprimer3
|
|
bin/equicktandem
|
|
bin/est2genome
|
|
bin/etandem
|
|
bin/extractfeat
|
|
bin/extractseq
|
|
bin/findkm
|
|
bin/freak
|
|
bin/fuzznuc
|
|
bin/fuzzpro
|
|
bin/fuzztran
|
|
bin/garnier
|
|
bin/geecee
|
|
bin/getorf
|
|
bin/helixturnhelix
|
|
bin/hmoment
|
|
bin/iep
|
|
bin/infoalign
|
|
bin/infoseq
|
|
bin/isochore
|
|
bin/jembossctl
|
|
bin/lindna
|
|
bin/listor
|
|
bin/marscan
|
|
bin/maskfeat
|
|
bin/maskseq
|
|
bin/matcher
|
|
bin/megamerger
|
|
bin/merger
|
|
bin/msbar
|
|
bin/mwcontam
|
|
bin/mwfilter
|
|
bin/needle
|
|
bin/newcpgreport
|
|
bin/newcpgseek
|
|
bin/newseq
|
|
bin/noreturn
|
|
bin/notseq
|
|
bin/nthseq
|
|
bin/octanol
|
|
bin/oddcomp
|
|
bin/palindrome
|
|
bin/pasteseq
|
|
bin/patmatdb
|
|
bin/patmatmotifs
|
|
bin/pepcoil
|
|
bin/pepinfo
|
|
bin/pepnet
|
|
bin/pepstats
|
|
bin/pepwheel
|
|
bin/pepwindow
|
|
bin/pepwindowall
|
|
bin/plotcon
|
|
bin/plotorf
|
|
bin/polydot
|
|
bin/preg
|
|
bin/prettyplot
|
|
bin/prettyseq
|
|
bin/primersearch
|
|
bin/printsextract
|
|
bin/profit
|
|
bin/prophecy
|
|
bin/prophet
|
|
bin/prosextract
|
|
bin/pscan
|
|
bin/psiphi
|
|
bin/rebaseextract
|
|
bin/recoder
|
|
bin/redata
|
|
bin/remap
|
|
bin/restover
|
|
bin/restrict
|
|
bin/revseq
|
|
bin/seealso
|
|
bin/seqmatchall
|
|
bin/seqret
|
|
bin/seqretsplit
|
|
bin/showalign
|
|
bin/showdb
|
|
bin/showfeat
|
|
bin/showorf
|
|
bin/showseq
|
|
bin/shuffleseq
|
|
bin/sigcleave
|
|
bin/silent
|
|
bin/sirna
|
|
bin/sixpack
|
|
bin/skipseq
|
|
bin/syco
|
|
bin/splitter
|
|
bin/stretcher
|
|
bin/stssearch
|
|
bin/supermatcher
|
|
bin/tcode
|
|
bin/textsearch
|
|
bin/tfextract
|
|
bin/tfm
|
|
bin/tfscan
|
|
bin/tmap
|
|
bin/tranalign
|
|
bin/transeq
|
|
bin/trimest
|
|
bin/trimseq
|
|
bin/twofeat
|
|
bin/union
|
|
bin/vectorstrip
|
|
bin/water
|
|
bin/whichdb
|
|
bin/wobble
|
|
bin/wordcount
|
|
bin/wordmatch
|
|
bin/wossname
|
|
bin/yank
|
|
bin/runJemboss.csh
|
|
include/drivers.h
|
|
include/pdf.h
|
|
include/plcore.h
|
|
include/plevent.h
|
|
include/plplotP.h
|
|
include/plxwd.h
|
|
include/metadefs.h
|
|
include/plConfig.h
|
|
include/pldebug.h
|
|
include/plplot.h
|
|
include/plstrm.h
|
|
include/plDevs.h
|
|
include/ajax.h
|
|
include/ajarch.h
|
|
include/ajdefine.h
|
|
include/ajacd.h
|
|
include/ajalign.h
|
|
include/ajarr.h
|
|
include/ajassert.h
|
|
include/ajbase.h
|
|
include/ajcall.h
|
|
include/ajcod.h
|
|
include/ajdan.h
|
|
include/ajdmx.h
|
|
include/ajdomain.h
|
|
include/ajexcept.h
|
|
include/ajfeat.h
|
|
include/ajfeatdata.h
|
|
include/ajfile.h
|
|
include/ajfmt.h
|
|
include/ajgraph.h
|
|
include/ajgraphxml.h
|
|
include/ajgraphstruct.h
|
|
include/ajhist.h
|
|
include/ajindex.h
|
|
include/ajjava.h
|
|
include/ajlist.h
|
|
include/ajmath.h
|
|
include/ajmatrices.h
|
|
include/ajmem.h
|
|
include/ajmess.h
|
|
include/ajnam.h
|
|
include/ajnexus.h
|
|
include/ajpdb.h
|
|
include/ajpdbio.h
|
|
include/ajphylo.h
|
|
include/ajrange.h
|
|
include/ajreg.h
|
|
include/ajreport.h
|
|
include/ajseq.h
|
|
include/ajseqabi.h
|
|
include/ajseqdata.h
|
|
include/ajseqdb.h
|
|
include/ajseqread.h
|
|
include/ajseqtype.h
|
|
include/ajseqwrite.h
|
|
include/ajsort.h
|
|
include/ajstr.h
|
|
include/ajsys.h
|
|
include/ajtable.h
|
|
include/ajtime.h
|
|
include/ajtranslate.h
|
|
include/ajtree.h
|
|
include/ajutil.h
|
|
include/ajvector.h
|
|
include/pcre.h
|
|
include/pcre_chartables.c
|
|
include/pcre_config.h
|
|
include/pcre_get.c
|
|
include/pcre_printint.c
|
|
include/pcre_internal.h
|
|
include/pcreposix.h
|
|
include/emboss.h
|
|
include/embaln.h
|
|
include/embcom.h
|
|
include/embcons.h
|
|
include/embdata.h
|
|
include/embdbi.h
|
|
include/embdmx.h
|
|
include/embdomain.h
|
|
include/embest.h
|
|
include/embexit.h
|
|
include/embgroup.h
|
|
include/embiep.h
|
|
include/embindex.h
|
|
include/embinit.h
|
|
include/embmat.h
|
|
include/embmisc.h
|
|
include/embmol.h
|
|
include/embnmer.h
|
|
include/embpat.h
|
|
include/embprop.h
|
|
include/embpdb.h
|
|
include/embread.h
|
|
include/embsig.h
|
|
include/embshow.h
|
|
include/embword.h
|
|
lib/libplplot.so.5
|
|
lib/libplplot.so
|
|
lib/libplplot.la
|
|
lib/libplplot.a
|
|
lib/libajax.so.3
|
|
lib/libajax.so
|
|
lib/libajax.la
|
|
lib/libajax.a
|
|
lib/libajaxg.so.3
|
|
lib/libajaxg.so
|
|
lib/libajaxg.la
|
|
lib/libajaxg.a
|
|
lib/libnucleus.so.3
|
|
lib/libnucleus.so
|
|
lib/libnucleus.la
|
|
lib/libnucleus.a
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.sty
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.tex
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.aux
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.dvi
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.log
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.pdf
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.ps
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/admin.toc
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/adminguide.tar.gz
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/domainatrix.doc
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/program.ps.gz
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/EMBOSS-FreeBSD-HOWTO.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/emboss_qg.pdf
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/emboss_qg.ps
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/emboss.sty
|
|
%%PORTDOCS%%%%DOCSDIR%%/manuals/fdl.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/lindna.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/listor.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/marscan.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/maskfeat.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/maskseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/matcher.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/matgen3d.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/megamerger.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/meme.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/menus_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/merger.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/msbar.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/mse.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/mwcontam.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/mwfilter.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/myseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nawalign.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nawalignrunner.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/needle.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/needlerunner.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/newcpgreport.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/newcpgseek.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/newseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/noreturn.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/notseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nthseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_2d_structure_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_codon_usage_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_codon_usage_nucleic_gene_finding_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_composition_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_cpg_islands_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_gene_finding_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_motifs_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_mutation_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_primers_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_profiles_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_repeats_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_restriction_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_transcription_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/nucleic_translation_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/octanol.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/oddcomp.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/palindrome.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pasteseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/patmatdb.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/patmatmotifs.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pdbparse.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pdbplus.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pdbtosp.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepcoil.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepinfo.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepnet.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepstats.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepwheel.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepwindow.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepwindowall.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_consensus_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_continuous_characters_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_discrete_characters_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_distance_matrix_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_gene_frequencies_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_molecular_sequence_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/phylogeny_tree_drawing_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/plotcon.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/plotorf.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/polydot.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/preg.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/prettyplot.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/prettyseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/primersearch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/printsextract.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/profit.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/prophecy.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/prophet.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/prosextract.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_2d_structure_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_3d_structure_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_composition_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_motifs_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_mutation_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_profiles_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/protein_sequence_alignment_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pscan.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/psiphi.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/rebaseextract.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/recoder.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/redata.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/remap.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/restover.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/restrict.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/revseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/rocon.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/rocplot.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/scope.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/scopparse.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/scorecmapdir.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/scorer.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/scorerrunner.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seealso.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqalign.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqfraggle.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqmatchall.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqnr.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqret.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqretsplit.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqsearch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqsort.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/seqwords.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/showalign.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/showdb.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/showfeat.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/showorf.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/showseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/shuffleseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/sigcleave.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/siggen.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/siggenlig.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/sigscan.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/sigscanlig.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/silent.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/sirna.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/sites.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/sixpack.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/skipseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/splitter.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ssematch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/stretcher.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/stssearch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/substitute.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/substituterunner.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/supermatcher.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/syco.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/tcode.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/template.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/test_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/textsearch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/tfextract.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/tfm.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/tfscan.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/tmap.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/topo.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/tranalign.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/transeq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/trimest.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/trimseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/twofeat.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/union.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/utils_database_creation_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/utils_database_indexing_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/utils_misc_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/vectorstrip.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/water.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/whichdb.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wobble.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wordcount.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wordmatch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wossname.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/yank.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/emboss_icon.jpg
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/abiview.1.abiview.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/chaos.1.chaos.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cirdna.1.cirdna.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cpgplot.1.cpgplot.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dan.2.dan.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dotmatcher.1.dotmatcher.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dotpath.1.dotpath.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dottup.1.dottup.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/emboss_icon.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/findkm.1.findkm.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/isochore.1.isochore.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/lindna.1.lindna.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/octanol.1.octanol.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepinfo.1.pepinfo.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepnet.1.pepnet.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepwheel.1.pepwheel.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepwindow.1.pepwindow.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/pepwindowall.1.pepwindowall.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/plotcon.1.plotcon.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/plotorf.1.plotorf.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/plotorf.2.plotorf.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/polydot.1.polydot.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/prettyplot.1.prettyplot.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/prettyplot.2.prettyplot.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/syco.1.syco.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/tmap.1.tmap.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/topo.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/wobble.1.wobble.gif
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/aaindexextract.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/abiview.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/acd_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/acdc.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/acdlog.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/acdpretty.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/acdtable.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/acdtrace.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/acdvalid.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ajtest.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/alignment_consensus_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/alignment_differences_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/alignment_dot_plots_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/antigenic.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/alignment_global_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/alignment_local_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/alignment_multiple_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/alignrunner.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/allversusall.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/backtranseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/banana.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/biosed.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/btwisted.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cai.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cathparse.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/chaos.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/charge.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/checktrans.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/chips.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cirdna.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/codcmp.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/codcopy.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/coderet.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/comparator.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/compseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cons.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/contactalign.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/contacts.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cpgplot.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cpgreport.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/crystalball.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cusp.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cutgextract.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/cutseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dan.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbiblast.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbifasta.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbiflat.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbigcg.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxfasta.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxflat.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dbxgcg.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/degapseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/degapseqrunner.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/descseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/diffseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/digest.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/display_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/distmat.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainalign.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainer.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainnr.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainrep.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainreso.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainseqs.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/domainsse.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dotmatcher.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dotpath.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dottup.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/dreg.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ealistat.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eclique.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/econsense.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/econtml.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/econtrast.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edit_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednacomp.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednadist.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednainvar.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednaml.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednamlk.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednapars.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ednapenny.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edollop.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/edolpenny.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/efactor.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/efitch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/egendist.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmalign.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmbuild.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmcalibrate.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmconvert.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmemit.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmfetch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmindex.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmpfam.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ehmmsearch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/einverted.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ekitsch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/embossdata.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/embossversion.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/emix.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/emma.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/emnu.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/emowse.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eneighbor.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/entret.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/enzyme_kinetics_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/epenny.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/epestfind.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eprimer3.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eprotdist.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eprotpars.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/equicktandem.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/erestml.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/eseqboot.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/esim4.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/est2genome.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/etandem.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/extractfeat.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/extractseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fclique.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fconsense.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fcontml.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fcontrast.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdiscboot.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnacomp.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnadist.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnainvar.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnaml.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnamlk.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnamove.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnapars.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdnapenny.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdollop.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdolmove.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdolpenny.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdrawgram.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fdrawtree.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/feature_tables_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ffactor.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ffitch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ffreqboot.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fgendist.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/findkm.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fkitsch.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fmix.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fmove.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fneighbor.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fpars.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fpenny.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fproml.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fpromlk.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fprotdist.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fprotpars.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/freak.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/frestboot.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/frestdist.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/frestml.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fretree.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fseqboot.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fseqbootall.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ftreedist.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/ftreedistpair.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fuzznuc.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fuzzpro.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/fuzztran.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/garnier.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/geecee.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/getorf.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/groups.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/helixturnhelix.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/hetparse.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/hmm_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/hmoment.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/iep.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/index.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/infoalign.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/information_group.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/infoseq.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/interface.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/isochore.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/jembossctl.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/libgen.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/html/libscan.html
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/jembossctl.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/libgen.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/libscan.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/lindna.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/listor.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/marscan.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/maskfeat.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/maskseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/matcher.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/matgen3d.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/megamerger.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/meme.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/merger.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/msbar.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/mse.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/mwcontam.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/mwfilter.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/myseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/nawalign.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/nawalignrunner.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/needle.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/needlerunner.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/newcpgreport.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/newcpgseek.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/newseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/noreturn.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/notseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/nthseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/octanol.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/oddcomp.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/palindrome.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pasteseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/patmatdb.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/patmatmotifs.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pdbparse.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pdbplus.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pdbtosp.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepcoil.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepinfo.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepnet.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepstats.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepwheel.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepwindow.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pepwindowall.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/plotcon.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/plotorf.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/polydot.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/preg.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prettyplot.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prettyseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/primersearch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/printsextract.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/profit.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prophecy.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prophet.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/prosextract.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/pscan.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/psiphi.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/rebaseextract.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/recoder.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/redata.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/remap.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/restover.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/restrict.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/revseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/rocon.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/rocplot.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/scope.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/scopparse.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/scorecmapdir.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/scorer.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/scorerrunner.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seealso.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqalign.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqfraggle.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqmatchall.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqnr.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqret.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqretsplit.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqsearch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqsort.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/seqwords.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/showalign.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/showdb.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/showfeat.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/showorf.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/showseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/shuffleseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/sigcleave.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/siggen.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/siggenlig.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/sigscan.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/sigscanlig.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/silent.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/sirna.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/SITE-DIRECTED.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/sites.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/sixpack.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/skipseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/splitter.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ssematch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/stretcher.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/stssearch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/substitute.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/substituterunner.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/supermatcher.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/syco.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tcode.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/textsearch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tfextract.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tfm.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tfscan.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tmap.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/topo.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/tranalign.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/transeq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/trimest.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/trimseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/twofeat.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/union.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/vectorstrip.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/water.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/whichdb.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wobble.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wordcount.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wordmatch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/wossname.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/yank.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/aaindexextract.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/abiview.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/acdc.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/acdlog.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/acdpretty.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/acdtable.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cai.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/acdtrace.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/acdvalid.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/alignrunner.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/allversusall.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/antigenic.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/backtranseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/banana.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/biosed.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/btwisted.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cathparse.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/chaos.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/charge.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/checktrans.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/chips.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cirdna.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/codcmp.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/codcopy.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/coderet.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/comparator.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/complex.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/compseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cons.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/contactalign.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/contacts.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cpgplot.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cpgreport.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/crystalball.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cusp.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cutgextract.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/cutseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dan.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbiblast.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbifasta.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbiflat.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbigcg.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxfasta.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxflat.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dbxgcg.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/degapseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/degapseqrunner.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/descseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/diffseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/digest.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/distmat.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/domainalign.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/domainer.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/domainnr.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/domainrep.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/domainreso.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/domainseqs.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/domainsse.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dotmatcher.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dotpath.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dottup.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/dreg.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ealistat.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/eclique.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/econsense.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/econtml.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/econtrast.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ednacomp.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ednadist.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ednainvar.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ednaml.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ednamlk.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ednapars.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ednapenny.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/edollop.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/iep.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/edolpenny.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/efactor.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/efitch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/egendist.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ehmmalign.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ehmmbuild.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ehmmcalibrate.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ehmmconvert.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ehmmemit.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ehmmfetch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ehmmindex.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ehmmpfam.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ehmmsearch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/einverted.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ekitsch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/embossdata.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/embossversion.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/emix.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/emma.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/emnu.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/emowse.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/eneighbor.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/entret.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/epenny.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/epestfind.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/eprimer3.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/eprotdist.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/eprotpars.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/equicktandem.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/erestml.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/eseqboot.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/esim4.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/est2genome.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/etandem.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/extractfeat.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/extractseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fclique.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fconsense.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fcontml.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fcontrast.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdiscboot.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdnacomp.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdnadist.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdnainvar.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdnaml.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdnamlk.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdnamove.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdnapars.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdnapenny.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdollop.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdolmove.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdolpenny.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdrawgram.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fdrawtree.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ffactor.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ffitch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ffreqboot.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fgendist.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/findkm.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fkitsch.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fmix.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fmove.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fneighbor.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fpars.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fpenny.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fproml.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fpromlk.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fprotdist.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fprotpars.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/freak.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/frestboot.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/frestdist.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/frestml.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fretree.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fseqboot.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fseqbootall.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ftreedist.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/ftreedistpair.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fuzznuc.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fuzzpro.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/fuzztran.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/garnier.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/geecee.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/getorf.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/helixturnhelix.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/hetparse.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/hmoment.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/infoalign.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/infoseq.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/interface.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/programs/text/isochore.txt
|
|
%%PORTDOCS%%%%DOCSDIR%%/tutorials/emboss-gcg.ppt
|
|
%%PORTDOCS%%%%DOCSDIR%%/tutorials/emboss-interfaces.ppt
|
|
%%PORTDOCS%%%%DOCSDIR%%/tutorials/emboss-talk.ppt
|
|
%%PORTDOCS%%%%DOCSDIR%%/tutorials/emboss_tut.tar.gz
|
|
%%DATADIR%%/plstnd5.fnt
|
|
%%DATADIR%%/plxtnd5.fnt
|
|
%%DATADIR%%/acd/needle.acd
|
|
%%DATADIR%%/acd/newcoils.acd
|
|
%%DATADIR%%/acd/newcpgreport.acd
|
|
%%DATADIR%%/acd/newcpgseek.acd
|
|
%%DATADIR%%/acd/newseq.acd
|
|
%%DATADIR%%/acd/noreturn.acd
|
|
%%DATADIR%%/acd/notseq.acd
|
|
%%DATADIR%%/acd/nthseq.acd
|
|
%%DATADIR%%/acd/octanol.acd
|
|
%%DATADIR%%/acd/oddcomp.acd
|
|
%%DATADIR%%/acd/palindrome.acd
|
|
%%DATADIR%%/acd/pasteseq.acd
|
|
%%DATADIR%%/acd/patmatdb.acd
|
|
%%DATADIR%%/acd/patmatmotifs.acd
|
|
%%DATADIR%%/acd/patmattest.acd
|
|
%%DATADIR%%/acd/pepcoil.acd
|
|
%%DATADIR%%/acd/pepinfo.acd
|
|
%%DATADIR%%/acd/pepnet.acd
|
|
%%DATADIR%%/acd/pepstats.acd
|
|
%%DATADIR%%/acd/pepwheel.acd
|
|
%%DATADIR%%/acd/pepwindow.acd
|
|
%%DATADIR%%/acd/pepwindowall.acd
|
|
%%DATADIR%%/acd/plotcon.acd
|
|
%%DATADIR%%/acd/plotorf.acd
|
|
%%DATADIR%%/acd/polydot.acd
|
|
%%DATADIR%%/acd/preg.acd
|
|
%%DATADIR%%/acd/prettyplot.acd
|
|
%%DATADIR%%/acd/prettyseq.acd
|
|
%%DATADIR%%/acd/prima.acd
|
|
%%DATADIR%%/acd/primers.acd
|
|
%%DATADIR%%/acd/primersearch.acd
|
|
%%DATADIR%%/acd/printsextract.acd
|
|
%%DATADIR%%/acd/profit.acd
|
|
%%DATADIR%%/acd/prophecy.acd
|
|
%%DATADIR%%/acd/prophet.acd
|
|
%%DATADIR%%/acd/prosextract.acd
|
|
%%DATADIR%%/acd/pscan.acd
|
|
%%DATADIR%%/acd/psiphi.acd
|
|
%%DATADIR%%/acd/rebaseextract.acd
|
|
%%DATADIR%%/acd/recoder.acd
|
|
%%DATADIR%%/acd/redata.acd
|
|
%%DATADIR%%/acd/remap.acd
|
|
%%DATADIR%%/acd/restover.acd
|
|
%%DATADIR%%/acd/revseq.acd
|
|
%%DATADIR%%/acd/restrict.acd
|
|
%%DATADIR%%/acd/seealso.acd
|
|
%%DATADIR%%/acd/seqinfo.acd
|
|
%%DATADIR%%/acd/seqmatchall.acd
|
|
%%DATADIR%%/acd/seqret.acd
|
|
%%DATADIR%%/acd/seqretall.acd
|
|
%%DATADIR%%/acd/seqretallfeat.acd
|
|
%%DATADIR%%/acd/seqretset.acd
|
|
%%DATADIR%%/acd/seqretsingle.acd
|
|
%%DATADIR%%/acd/seqretsplit.acd
|
|
%%DATADIR%%/acd/seqrettype.acd
|
|
%%DATADIR%%/acd/showalign.acd
|
|
%%DATADIR%%/acd/showdb.acd
|
|
%%DATADIR%%/acd/showfeat.acd
|
|
%%DATADIR%%/acd/showorf.acd
|
|
%%DATADIR%%/acd/showseq.acd
|
|
%%DATADIR%%/acd/shuffleseq.acd
|
|
%%DATADIR%%/acd/sigcleave.acd
|
|
%%DATADIR%%/acd/silent.acd
|
|
%%DATADIR%%/acd/sirna.acd
|
|
%%DATADIR%%/acd/sixpack.acd
|
|
%%DATADIR%%/acd/skipseq.acd
|
|
%%DATADIR%%/acd/tfm.acd
|
|
%%DATADIR%%/acd/splitter.acd
|
|
%%DATADIR%%/acd/stretcher.acd
|
|
%%DATADIR%%/acd/stssearch.acd
|
|
%%DATADIR%%/acd/supermatcher.acd
|
|
%%DATADIR%%/acd/syco.acd
|
|
%%DATADIR%%/acd/tcode.acd
|
|
%%DATADIR%%/acd/testplot.acd
|
|
%%DATADIR%%/acd/textsearch.acd
|
|
%%DATADIR%%/acd/tfextract.acd
|
|
%%DATADIR%%/acd/tfscan.acd
|
|
%%DATADIR%%/acd/tmap.acd
|
|
%%DATADIR%%/acd/tranalign.acd
|
|
%%DATADIR%%/acd/transeq.acd
|
|
%%DATADIR%%/acd/treetypedisplay.acd
|
|
%%DATADIR%%/acd/trimest.acd
|
|
%%DATADIR%%/acd/trimseq.acd
|
|
%%DATADIR%%/acd/twofeat.acd
|
|
%%DATADIR%%/acd/union.acd
|
|
%%DATADIR%%/acd/vectorstrip.acd
|
|
%%DATADIR%%/acd/water.acd
|
|
%%DATADIR%%/acd/whichdb.acd
|
|
%%DATADIR%%/acd/wobble.acd
|
|
%%DATADIR%%/acd/wordcount.acd
|
|
%%DATADIR%%/acd/wordmatch.acd
|
|
%%DATADIR%%/acd/wossname.acd
|
|
%%DATADIR%%/acd/yank.acd
|
|
%%DATADIR%%/acd/codes.english
|
|
%%DATADIR%%/acd/groups.standard
|
|
%%DATADIR%%/acd/knowntypes.standard
|
|
%%DATADIR%%/acd/sections.standard
|
|
%%DATADIR%%/acd/variables.standard
|
|
%%DATADIR%%/acd/aaindexextract.acd
|
|
%%DATADIR%%/acd/abiview.acd
|
|
%%DATADIR%%/acd/acdc.acd
|
|
%%DATADIR%%/acd/acdlog.acd
|
|
%%DATADIR%%/acd/acdpretty.acd
|
|
%%DATADIR%%/acd/acdtable.acd
|
|
%%DATADIR%%/acd/acdtrace.acd
|
|
%%DATADIR%%/acd/acdvalid.acd
|
|
%%DATADIR%%/acd/ajbad.acd
|
|
%%DATADIR%%/acd/ajfeatest.acd
|
|
%%DATADIR%%/acd/ajtest.acd
|
|
%%DATADIR%%/acd/antigenic.acd
|
|
%%DATADIR%%/acd/backtranseq.acd
|
|
%%DATADIR%%/acd/cai.acd
|
|
%%DATADIR%%/acd/banana.acd
|
|
%%DATADIR%%/acd/biosed.acd
|
|
%%DATADIR%%/acd/btwisted.acd
|
|
%%DATADIR%%/acd/chaos.acd
|
|
%%DATADIR%%/acd/charge.acd
|
|
%%DATADIR%%/acd/checktrans.acd
|
|
%%DATADIR%%/acd/chips.acd
|
|
%%DATADIR%%/acd/cirdna.acd
|
|
%%DATADIR%%/acd/codcmp.acd
|
|
%%DATADIR%%/acd/codcopy.acd
|
|
%%DATADIR%%/acd/coderet.acd
|
|
%%DATADIR%%/acd/complex.acd
|
|
%%DATADIR%%/acd/compseq.acd
|
|
%%DATADIR%%/acd/cons.acd
|
|
%%DATADIR%%/acd/corbatest.acd
|
|
%%DATADIR%%/acd/cpgplot.acd
|
|
%%DATADIR%%/acd/cpgreport.acd
|
|
%%DATADIR%%/acd/cusp.acd
|
|
%%DATADIR%%/acd/cutgextract.acd
|
|
%%DATADIR%%/acd/cutseq.acd
|
|
%%DATADIR%%/acd/dan.acd
|
|
%%DATADIR%%/acd/dbiblast.acd
|
|
%%DATADIR%%/acd/dbifasta.acd
|
|
%%DATADIR%%/acd/dbiflat.acd
|
|
%%DATADIR%%/acd/dbigcg.acd
|
|
%%DATADIR%%/acd/dbxfasta.acd
|
|
%%DATADIR%%/acd/dbxflat.acd
|
|
%%DATADIR%%/acd/dbxgcg.acd
|
|
%%DATADIR%%/acd/degapseq.acd
|
|
%%DATADIR%%/acd/demoalign.acd
|
|
%%DATADIR%%/acd/demofeatures.acd
|
|
%%DATADIR%%/acd/demolist.acd
|
|
%%DATADIR%%/acd/demoreport.acd
|
|
%%DATADIR%%/acd/demosequence.acd
|
|
%%DATADIR%%/acd/demostring.acd
|
|
%%DATADIR%%/acd/demotable.acd
|
|
%%DATADIR%%/acd/descseq.acd
|
|
%%DATADIR%%/acd/diffseq.acd
|
|
%%DATADIR%%/acd/digest.acd
|
|
%%DATADIR%%/acd/distmat.acd
|
|
%%DATADIR%%/acd/dotmatcher.acd
|
|
%%DATADIR%%/acd/dotpath.acd
|
|
%%DATADIR%%/acd/dottup.acd
|
|
%%DATADIR%%/acd/dreg.acd
|
|
%%DATADIR%%/acd/einverted.acd
|
|
%%DATADIR%%/acd/embossdata.acd
|
|
%%DATADIR%%/acd/iep.acd
|
|
%%DATADIR%%/acd/embossversion.acd
|
|
%%DATADIR%%/acd/emma.acd
|
|
%%DATADIR%%/acd/emowse.acd
|
|
%%DATADIR%%/acd/entrails.acd
|
|
%%DATADIR%%/acd/entret.acd
|
|
%%DATADIR%%/acd/epestfind.acd
|
|
%%DATADIR%%/acd/eprimer3.acd
|
|
%%DATADIR%%/acd/equicktandem.acd
|
|
%%DATADIR%%/acd/est2genome.acd
|
|
%%DATADIR%%/acd/etandem.acd
|
|
%%DATADIR%%/acd/extractfeat.acd
|
|
%%DATADIR%%/acd/extractseq.acd
|
|
%%DATADIR%%/acd/findkm.acd
|
|
%%DATADIR%%/acd/freak.acd
|
|
%%DATADIR%%/acd/fuzznuc.acd
|
|
%%DATADIR%%/acd/fuzzpro.acd
|
|
%%DATADIR%%/acd/fuzztran.acd
|
|
%%DATADIR%%/acd/garnier.acd
|
|
%%DATADIR%%/acd/geecee.acd
|
|
%%DATADIR%%/acd/getorf.acd
|
|
%%DATADIR%%/acd/giep.acd
|
|
%%DATADIR%%/acd/helixturnhelix.acd
|
|
%%DATADIR%%/acd/hmoment.acd
|
|
%%DATADIR%%/acd/histogramtest.acd
|
|
%%DATADIR%%/acd/infoalign.acd
|
|
%%DATADIR%%/acd/infoseq.acd
|
|
%%DATADIR%%/acd/intconv.acd
|
|
%%DATADIR%%/acd/isochore.acd
|
|
%%DATADIR%%/acd/kmrsplitter.acd
|
|
%%DATADIR%%/acd/kmrunion.acd
|
|
%%DATADIR%%/acd/lindna.acd
|
|
%%DATADIR%%/acd/listor.acd
|
|
%%DATADIR%%/acd/marscan.acd
|
|
%%DATADIR%%/acd/maskfeat.acd
|
|
%%DATADIR%%/acd/maskseq.acd
|
|
%%DATADIR%%/acd/matcher.acd
|
|
%%DATADIR%%/acd/megamerger.acd
|
|
%%DATADIR%%/acd/merger.acd
|
|
%%DATADIR%%/acd/msbar.acd
|
|
%%DATADIR%%/acd/mwcontam.acd
|
|
%%DATADIR%%/acd/mwfilter.acd
|
|
%%DATADIR%%/data/AAINDEX/dummyfile
|
|
%%DATADIR%%/data/CODONS/Cut.index
|
|
%%DATADIR%%/data/CODONS/Eacica.cut
|
|
%%DATADIR%%/data/CODONS/Eagrtu.cut
|
|
%%DATADIR%%/data/CODONS/Eanasp.cut
|
|
%%DATADIR%%/data/CODONS/Earath.cut
|
|
%%DATADIR%%/data/CODONS/Eazovi.cut
|
|
%%DATADIR%%/data/CODONS/Ebacme.cut
|
|
%%DATADIR%%/data/CODONS/Ebacst.cut
|
|
%%DATADIR%%/data/CODONS/Ebacsu.cut
|
|
%%DATADIR%%/data/CODONS/Ebacsu_high.cut
|
|
%%DATADIR%%/data/CODONS/Ebommo.cut
|
|
%%DATADIR%%/data/CODONS/Ebovin.cut
|
|
%%DATADIR%%/data/CODONS/Ebpphx.cut
|
|
%%DATADIR%%/data/CODONS/Ebraja.cut
|
|
%%DATADIR%%/data/CODONS/Ebrana.cut
|
|
%%DATADIR%%/data/CODONS/Ebrare.cut
|
|
%%DATADIR%%/data/CODONS/Ecaeel.cut
|
|
%%DATADIR%%/data/CODONS/Ecanal.cut
|
|
%%DATADIR%%/data/CODONS/Ecanfa.cut
|
|
%%DATADIR%%/data/CODONS/Ecaucr.cut
|
|
%%DATADIR%%/data/CODONS/Echick.cut
|
|
%%DATADIR%%/data/CODONS/Echlre.cut
|
|
%%DATADIR%%/data/CODONS/Echltr.cut
|
|
%%DATADIR%%/data/CODONS/Ecloab.cut
|
|
%%DATADIR%%/data/CODONS/Ecrigr.cut
|
|
%%DATADIR%%/data/CODONS/Ecyapa.cut
|
|
%%DATADIR%%/data/CODONS/Edayhoff.cut
|
|
%%DATADIR%%/data/CODONS/Edicdi.cut
|
|
%%DATADIR%%/data/CODONS/Edicdi_high.cut
|
|
%%DATADIR%%/data/CODONS/Edrome.cut
|
|
%%DATADIR%%/data/CODONS/Edrome_high.cut
|
|
%%DATADIR%%/data/CODONS/Eecoli.cut
|
|
%%DATADIR%%/data/CODONS/Eecoli_high.cut
|
|
%%DATADIR%%/data/CODONS/Eemeni.cut
|
|
%%DATADIR%%/data/CODONS/Eemeni_mit.cut
|
|
%%DATADIR%%/data/CODONS/Eemeni_high.cut
|
|
%%DATADIR%%/data/CODONS/Eerwct.cut
|
|
%%DATADIR%%/data/CODONS/Ehaein.cut
|
|
%%DATADIR%%/data/CODONS/Ehalma.cut
|
|
%%DATADIR%%/data/CODONS/Ehalsa.cut
|
|
%%DATADIR%%/data/CODONS/Ehorvu.cut
|
|
%%DATADIR%%/data/CODONS/Ehuman.cut
|
|
%%DATADIR%%/data/CODONS/Eklepn.cut
|
|
%%DATADIR%%/data/CODONS/Eklula.cut
|
|
%%DATADIR%%/data/CODONS/Elacdl.cut
|
|
%%DATADIR%%/data/CODONS/Elyces.cut
|
|
%%DATADIR%%/data/CODONS/Emacfa.cut
|
|
%%DATADIR%%/data/CODONS/Emaize.cut
|
|
%%DATADIR%%/data/CODONS/Emaize_chl.cut
|
|
%%DATADIR%%/data/CODONS/Emammal_high.cut
|
|
%%DATADIR%%/data/CODONS/Emanse.cut
|
|
%%DATADIR%%/data/CODONS/Emarpo_chl.cut
|
|
%%DATADIR%%/data/CODONS/Emedsa.cut
|
|
%%DATADIR%%/data/CODONS/Emetth.cut
|
|
%%DATADIR%%/data/CODONS/Emouse.cut
|
|
%%DATADIR%%/data/CODONS/Emyctu.cut
|
|
%%DATADIR%%/data/CODONS/Eneigo.cut
|
|
%%DATADIR%%/data/CODONS/Eneucr.cut
|
|
%%DATADIR%%/data/CODONS/Eoncmy.cut
|
|
%%DATADIR%%/data/CODONS/Eorysa.cut
|
|
%%DATADIR%%/data/CODONS/Eorysa_chl.cut
|
|
%%DATADIR%%/data/CODONS/Epea.cut
|
|
%%DATADIR%%/data/CODONS/Epethy.cut
|
|
%%DATADIR%%/data/CODONS/Ephavu.cut
|
|
%%DATADIR%%/data/CODONS/Epig.cut
|
|
%%DATADIR%%/data/CODONS/Eplafa.cut
|
|
%%DATADIR%%/data/CODONS/Eprovu.cut
|
|
%%DATADIR%%/data/CODONS/Epseae.cut
|
|
%%DATADIR%%/data/CODONS/Epsepu.cut
|
|
%%DATADIR%%/data/CODONS/Epsesm.cut
|
|
%%DATADIR%%/data/CODONS/Erabit.cut
|
|
%%DATADIR%%/data/CODONS/Erat.cut
|
|
%%DATADIR%%/data/CODONS/Erhile.cut
|
|
%%DATADIR%%/data/CODONS/Erhime.cut
|
|
%%DATADIR%%/data/CODONS/Erhoca.cut
|
|
%%DATADIR%%/data/CODONS/Erhosh.cut
|
|
%%DATADIR%%/data/CODONS/Esalsa.cut
|
|
%%DATADIR%%/data/CODONS/Esalty.cut
|
|
%%DATADIR%%/data/CODONS/Eschma.cut
|
|
%%DATADIR%%/data/CODONS/Eschpo.cut
|
|
%%DATADIR%%/data/CODONS/Eschpo_cai.cut
|
|
%%DATADIR%%/data/CODONS/Eschpo_high.cut
|
|
%%DATADIR%%/data/CODONS/Eserma.cut
|
|
%%DATADIR%%/data/CODONS/Esheep.cut
|
|
%%DATADIR%%/data/CODONS/Esoltu.cut
|
|
%%DATADIR%%/data/CODONS/Esoybn.cut
|
|
%%DATADIR%%/data/CODONS/Espiol.cut
|
|
%%DATADIR%%/data/CODONS/Estaau.cut
|
|
%%DATADIR%%/data/CODONS/Estrco.cut
|
|
%%DATADIR%%/data/CODONS/Estrmu.cut
|
|
%%DATADIR%%/data/CODONS/Estrpn.cut
|
|
%%DATADIR%%/data/CODONS/Estrpu.cut
|
|
%%DATADIR%%/data/CODONS/Esyncy.cut
|
|
%%DATADIR%%/data/CODONS/Esynco.cut
|
|
%%DATADIR%%/data/CODONS/Etetth.cut
|
|
%%DATADIR%%/data/CODONS/Etheth.cut
|
|
%%DATADIR%%/data/CODONS/Etobac.cut
|
|
%%DATADIR%%/data/CODONS/Etobac_chl.cut
|
|
%%DATADIR%%/data/CODONS/Etrybr.cut
|
|
%%DATADIR%%/data/CODONS/Etrycr.cut
|
|
%%DATADIR%%/data/CODONS/Evibch.cut
|
|
%%DATADIR%%/data/CODONS/Ewheat.cut
|
|
%%DATADIR%%/data/CODONS/Exenla.cut
|
|
%%DATADIR%%/data/CODONS/Eyeast.cut
|
|
%%DATADIR%%/data/CODONS/Eyeast_cai.cut
|
|
%%DATADIR%%/data/CODONS/Eyeast_high.cut
|
|
%%DATADIR%%/data/CODONS/Eyeast_mit.cut
|
|
%%DATADIR%%/data/CODONS/Eyeren.cut
|
|
%%DATADIR%%/data/CODONS/Eyerpe.cut
|
|
%%DATADIR%%/data/CODONS/Eacc.cut
|
|
%%DATADIR%%/data/CODONS/Eadenovirus5.cut
|
|
%%DATADIR%%/data/CODONS/Eadenovirus7.cut
|
|
%%DATADIR%%/data/CODONS/Eaidlav.cut
|
|
%%DATADIR%%/data/CODONS/Eani.cut
|
|
%%DATADIR%%/data/CODONS/Eani_h.cut
|
|
%%DATADIR%%/data/CODONS/Eanidmit.cut
|
|
%%DATADIR%%/data/CODONS/Easn.cut
|
|
%%DATADIR%%/data/CODONS/Eath.cut
|
|
%%DATADIR%%/data/CODONS/Eatu.cut
|
|
%%DATADIR%%/data/CODONS/Eavi.cut
|
|
%%DATADIR%%/data/CODONS/Ef1.cut
|
|
%%DATADIR%%/data/CODONS/Ebja.cut
|
|
%%DATADIR%%/data/CODONS/Ebly.cut
|
|
%%DATADIR%%/data/CODONS/Ebme.cut
|
|
%%DATADIR%%/data/CODONS/Ebmo.cut
|
|
%%DATADIR%%/data/CODONS/Ebna.cut
|
|
%%DATADIR%%/data/CODONS/Ebov.cut
|
|
%%DATADIR%%/data/CODONS/Ebovsp.cut
|
|
%%DATADIR%%/data/CODONS/Ebst.cut
|
|
%%DATADIR%%/data/CODONS/Ebsu.cut
|
|
%%DATADIR%%/data/CODONS/Ebsu_h.cut
|
|
%%DATADIR%%/data/CODONS/Ecac.cut
|
|
%%DATADIR%%/data/CODONS/Ecal.cut
|
|
%%DATADIR%%/data/CODONS/Eccr.cut
|
|
%%DATADIR%%/data/CODONS/Ecel.cut
|
|
%%DATADIR%%/data/CODONS/Echi.cut
|
|
%%DATADIR%%/data/CODONS/Echicken.cut
|
|
%%DATADIR%%/data/CODONS/Echisp.cut
|
|
%%DATADIR%%/data/CODONS/Echk.cut
|
|
%%DATADIR%%/data/CODONS/Echmp.cut
|
|
%%DATADIR%%/data/CODONS/Echnt.cut
|
|
%%DATADIR%%/data/CODONS/Echos.cut
|
|
%%DATADIR%%/data/CODONS/Echzm.cut
|
|
%%DATADIR%%/data/CODONS/Echzmrubp.cut
|
|
%%DATADIR%%/data/CODONS/Ecpx.cut
|
|
%%DATADIR%%/data/CODONS/Ecre.cut
|
|
%%DATADIR%%/data/CODONS/Ecrisp.cut
|
|
%%DATADIR%%/data/CODONS/Ectr.cut
|
|
%%DATADIR%%/data/CODONS/Eddi.cut
|
|
%%DATADIR%%/data/CODONS/Eddi_h.cut
|
|
%%DATADIR%%/data/CODONS/Edog.cut
|
|
%%DATADIR%%/data/CODONS/Edro.cut
|
|
%%DATADIR%%/data/CODONS/Edro_h.cut
|
|
%%DATADIR%%/data/CODONS/Edrosophila.cut
|
|
%%DATADIR%%/data/CODONS/Eeca.cut
|
|
%%DATADIR%%/data/CODONS/Eeco.cut
|
|
%%DATADIR%%/data/CODONS/Eeco_h.cut
|
|
%%DATADIR%%/data/CODONS/Efish.cut
|
|
%%DATADIR%%/data/CODONS/Efmdvpolyp.cut
|
|
%%DATADIR%%/data/CODONS/Eham.cut
|
|
%%DATADIR%%/data/CODONS/Ehha.cut
|
|
%%DATADIR%%/data/CODONS/Ehin.cut
|
|
%%DATADIR%%/data/CODONS/Ehma.cut
|
|
%%DATADIR%%/data/CODONS/Ehum.cut
|
|
%%DATADIR%%/data/CODONS/Ekla.cut
|
|
%%DATADIR%%/data/CODONS/Ekpn.cut
|
|
%%DATADIR%%/data/CODONS/Ella.cut
|
|
%%DATADIR%%/data/CODONS/Emac.cut
|
|
%%DATADIR%%/data/CODONS/Emam_h.cut
|
|
%%DATADIR%%/data/CODONS/Emixlg.cut
|
|
%%DATADIR%%/data/CODONS/Emsa.cut
|
|
%%DATADIR%%/data/CODONS/Emse.cut
|
|
%%DATADIR%%/data/CODONS/Emta.cut
|
|
%%DATADIR%%/data/CODONS/Emtu.cut
|
|
%%DATADIR%%/data/CODONS/Emus.cut
|
|
%%DATADIR%%/data/CODONS/Emussp.cut
|
|
%%DATADIR%%/data/CODONS/Emva.cut
|
|
%%DATADIR%%/data/CODONS/Emze.cut
|
|
%%DATADIR%%/data/CODONS/Emzecp.cut
|
|
%%DATADIR%%/data/CODONS/Encr.cut
|
|
%%DATADIR%%/data/CODONS/Eneu.cut
|
|
%%DATADIR%%/data/CODONS/Engo.cut
|
|
%%DATADIR%%/data/CODONS/Eoncsp.cut
|
|
%%DATADIR%%/data/CODONS/Epae.cut
|
|
%%DATADIR%%/data/CODONS/Epet.cut
|
|
%%DATADIR%%/data/CODONS/Epfa.cut
|
|
%%DATADIR%%/data/CODONS/Ephix174.cut
|
|
%%DATADIR%%/data/CODONS/Ephv.cut
|
|
%%DATADIR%%/data/CODONS/Ephy.cut
|
|
%%DATADIR%%/data/CODONS/Epolyomaa2.cut
|
|
%%DATADIR%%/data/CODONS/Epombe.cut
|
|
%%DATADIR%%/data/CODONS/Epombecai.cut
|
|
%%DATADIR%%/data/CODONS/Epot.cut
|
|
%%DATADIR%%/data/CODONS/Eppu.cut
|
|
%%DATADIR%%/data/CODONS/Epse.cut
|
|
%%DATADIR%%/data/CODONS/Epsy.cut
|
|
%%DATADIR%%/data/CODONS/Epvu.cut
|
|
%%DATADIR%%/data/CODONS/Erab.cut
|
|
%%DATADIR%%/data/CODONS/Erabbit.cut
|
|
%%DATADIR%%/data/CODONS/Erabsp.cut
|
|
%%DATADIR%%/data/CODONS/Eratsp.cut
|
|
%%DATADIR%%/data/CODONS/Erca.cut
|
|
%%DATADIR%%/data/CODONS/Erhm.cut
|
|
%%DATADIR%%/data/CODONS/Eric.cut
|
|
%%DATADIR%%/data/CODONS/Erle.cut
|
|
%%DATADIR%%/data/CODONS/Erme.cut
|
|
%%DATADIR%%/data/CODONS/Ersp.cut
|
|
%%DATADIR%%/data/CODONS/Esalsp.cut
|
|
%%DATADIR%%/data/CODONS/Esau.cut
|
|
%%DATADIR%%/data/CODONS/Esco.cut
|
|
%%DATADIR%%/data/CODONS/Esgi.cut
|
|
%%DATADIR%%/data/CODONS/Eshp.cut
|
|
%%DATADIR%%/data/CODONS/Eshpsp.cut
|
|
%%DATADIR%%/data/CODONS/Esli.cut
|
|
%%DATADIR%%/data/CODONS/Eslm.cut
|
|
%%DATADIR%%/data/CODONS/Esma.cut
|
|
%%DATADIR%%/data/CODONS/Esmi.cut
|
|
%%DATADIR%%/data/CODONS/Esmu.cut
|
|
%%DATADIR%%/data/CODONS/Esoy.cut
|
|
%%DATADIR%%/data/CODONS/Espi.cut
|
|
%%DATADIR%%/data/CODONS/Espn.cut
|
|
%%DATADIR%%/data/CODONS/Espo.cut
|
|
%%DATADIR%%/data/CODONS/Espo_h.cut
|
|
%%DATADIR%%/data/CODONS/Espu.cut
|
|
%%DATADIR%%/data/CODONS/Esta.cut
|
|
%%DATADIR%%/data/CODONS/Esty.cut
|
|
%%DATADIR%%/data/CODONS/Esus.cut
|
|
%%DATADIR%%/data/CODONS/Esv40.cut
|
|
%%DATADIR%%/data/CODONS/Esyhsp.cut
|
|
%%DATADIR%%/data/CODONS/Esynsp.cut
|
|
%%DATADIR%%/data/CODONS/Etbr.cut
|
|
%%DATADIR%%/data/CODONS/Etcr.cut
|
|
%%DATADIR%%/data/CODONS/Eter.cut
|
|
%%DATADIR%%/data/CODONS/Etetsp.cut
|
|
%%DATADIR%%/data/CODONS/Etob.cut
|
|
%%DATADIR%%/data/CODONS/Etobcp.cut
|
|
%%DATADIR%%/data/CODONS/Etom.cut
|
|
%%DATADIR%%/data/CODONS/Etrb.cut
|
|
%%DATADIR%%/data/CODONS/Evco.cut
|
|
%%DATADIR%%/data/CODONS/Ewht.cut
|
|
%%DATADIR%%/data/CODONS/Exel.cut
|
|
%%DATADIR%%/data/CODONS/Exenopus.cut
|
|
%%DATADIR%%/data/CODONS/Eyeastcai.cut
|
|
%%DATADIR%%/data/CODONS/Eyen.cut
|
|
%%DATADIR%%/data/CODONS/Eysc.cut
|
|
%%DATADIR%%/data/CODONS/Eysc_h.cut
|
|
%%DATADIR%%/data/CODONS/Eyscmt.cut
|
|
%%DATADIR%%/data/CODONS/Eysp.cut
|
|
%%DATADIR%%/data/CODONS/Ezebrafish.cut
|
|
%%DATADIR%%/data/CODONS/Ezma.cut
|
|
%%DATADIR%%/data/REBASE/dummyfile
|
|
%%DATADIR%%/data/PRINTS/dummyfile
|
|
%%DATADIR%%/data/PROSITE/dummyfile
|
|
%%DATADIR%%/data/EBLOSUM30
|
|
%%DATADIR%%/data/EBLOSUM35
|
|
%%DATADIR%%/data/EBLOSUM40
|
|
%%DATADIR%%/data/EBLOSUM45
|
|
%%DATADIR%%/data/EBLOSUM50
|
|
%%DATADIR%%/data/EBLOSUM55
|
|
%%DATADIR%%/data/EBLOSUM60
|
|
%%DATADIR%%/data/EBLOSUM62
|
|
%%DATADIR%%/data/EBLOSUM62-12
|
|
%%DATADIR%%/data/EBLOSUM65
|
|
%%DATADIR%%/data/EBLOSUM70
|
|
%%DATADIR%%/data/EBLOSUM75
|
|
%%DATADIR%%/data/EBLOSUM80
|
|
%%DATADIR%%/data/EBLOSUM85
|
|
%%DATADIR%%/data/EBLOSUM90
|
|
%%DATADIR%%/data/EBLOSUMN
|
|
%%DATADIR%%/data/EDNAFULL
|
|
%%DATADIR%%/data/EDNAMAT
|
|
%%DATADIR%%/data/EGC.0
|
|
%%DATADIR%%/data/EGC.1
|
|
%%DATADIR%%/data/EGC.10
|
|
%%DATADIR%%/data/EGC.11
|
|
%%DATADIR%%/data/EGC.12
|
|
%%DATADIR%%/data/EGC.13
|
|
%%DATADIR%%/data/EGC.14
|
|
%%DATADIR%%/data/EGC.15
|
|
%%DATADIR%%/data/EGC.16
|
|
%%DATADIR%%/data/EGC.2
|
|
%%DATADIR%%/data/EGC.21
|
|
%%DATADIR%%/data/EGC.22
|
|
%%DATADIR%%/data/EGC.23
|
|
%%DATADIR%%/data/EGC.3
|
|
%%DATADIR%%/data/EGC.4
|
|
%%DATADIR%%/data/EGC.5
|
|
%%DATADIR%%/data/EGC.6
|
|
%%DATADIR%%/data/EGC.9
|
|
%%DATADIR%%/data/EGC.index
|
|
%%DATADIR%%/data/EGC.txt
|
|
%%DATADIR%%/data/ENUC.4.2
|
|
%%DATADIR%%/data/ENUC.4.4
|
|
%%DATADIR%%/data/EPAM10
|
|
%%DATADIR%%/data/EPAM100
|
|
%%DATADIR%%/data/EPAM110
|
|
%%DATADIR%%/data/EPAM120
|
|
%%DATADIR%%/data/EPAM130
|
|
%%DATADIR%%/data/EPAM140
|
|
%%DATADIR%%/data/EPAM150
|
|
%%DATADIR%%/data/EPAM160
|
|
%%DATADIR%%/data/EPAM170
|
|
%%DATADIR%%/data/EPAM180
|
|
%%DATADIR%%/data/EPAM190
|
|
%%DATADIR%%/data/EPAM20
|
|
%%DATADIR%%/data/EPAM200
|
|
%%DATADIR%%/data/EPAM210
|
|
%%DATADIR%%/data/EPAM220
|
|
%%DATADIR%%/data/EPAM230
|
|
%%DATADIR%%/data/EPAM240
|
|
%%DATADIR%%/data/EPAM250
|
|
%%DATADIR%%/data/EPAM260
|
|
%%DATADIR%%/data/EPAM270
|
|
%%DATADIR%%/data/EPAM280
|
|
%%DATADIR%%/data/EPAM290
|
|
%%DATADIR%%/data/EPAM30
|
|
%%DATADIR%%/data/EPAM300
|
|
%%DATADIR%%/data/EPAM310
|
|
%%DATADIR%%/data/EPAM320
|
|
%%DATADIR%%/data/EPAM330
|
|
%%DATADIR%%/data/EPAM340
|
|
%%DATADIR%%/data/EPAM350
|
|
%%DATADIR%%/data/EPAM360
|
|
%%DATADIR%%/data/EPAM370
|
|
%%DATADIR%%/data/EPAM380
|
|
%%DATADIR%%/data/EPAM390
|
|
%%DATADIR%%/data/EPAM40
|
|
%%DATADIR%%/data/EPAM400
|
|
%%DATADIR%%/data/EPAM410
|
|
%%DATADIR%%/data/EPAM420
|
|
%%DATADIR%%/data/EPAM430
|
|
%%DATADIR%%/data/EPAM440
|
|
%%DATADIR%%/data/EPAM450
|
|
%%DATADIR%%/data/EPAM460
|
|
%%DATADIR%%/data/EPAM470
|
|
%%DATADIR%%/data/EPAM480
|
|
%%DATADIR%%/data/EPAM490
|
|
%%DATADIR%%/data/EPAM50
|
|
%%DATADIR%%/data/EPAM500
|
|
%%DATADIR%%/data/EPAM60
|
|
%%DATADIR%%/data/EPAM70
|
|
%%DATADIR%%/data/EPAM80
|
|
%%DATADIR%%/data/EPAM90
|
|
%%DATADIR%%/data/Eaa_acc_surface.dat
|
|
%%DATADIR%%/data/Eaa_hydropathy.dat
|
|
%%DATADIR%%/data/Eaa_properties.dat
|
|
%%DATADIR%%/data/Eamino.dat
|
|
%%DATADIR%%/data/Eangles.dat
|
|
%%DATADIR%%/data/Eangles_tri.dat
|
|
%%DATADIR%%/data/Eantigenic.dat
|
|
%%DATADIR%%/data/Ebases.iub
|
|
%%DATADIR%%/data/Edayhoff.freq
|
|
%%DATADIR%%/data/Edna.melt
|
|
%%DATADIR%%/data/Eembl.ior
|
|
%%DATADIR%%/data/Eenergy.dat
|
|
%%DATADIR%%/data/Efeatures.embl
|
|
%%DATADIR%%/data/Efeatures.emboss
|
|
%%DATADIR%%/data/Efeatures.gff
|
|
%%DATADIR%%/data/Efeatures.pir
|
|
%%DATADIR%%/data/Efeatures.protein
|
|
%%DATADIR%%/data/Efeatures.swiss
|
|
%%DATADIR%%/data/Efreqs.dat
|
|
%%DATADIR%%/data/Ehet.dat
|
|
%%DATADIR%%/data/Ehth.dat
|
|
%%DATADIR%%/data/Ehth87.dat
|
|
%%DATADIR%%/data/Ememe.dat
|
|
%%DATADIR%%/data/Enakai.dat
|
|
%%DATADIR%%/data/Epepcoil.dat
|
|
%%DATADIR%%/data/Epk.dat
|
|
%%DATADIR%%/data/Epprofile
|
|
%%DATADIR%%/data/Eprior1.plib
|
|
%%DATADIR%%/data/Eprior30.plib
|
|
%%DATADIR%%/data/Erna.melt
|
|
%%DATADIR%%/data/Esig.euk
|
|
%%DATADIR%%/data/Esig.pro
|
|
%%DATADIR%%/data/Etags.embl
|
|
%%DATADIR%%/data/Etags.emboss
|
|
%%DATADIR%%/data/Etags.gff
|
|
%%DATADIR%%/data/Etags.pir
|
|
%%DATADIR%%/data/Etags.protein
|
|
%%DATADIR%%/data/Etags.swiss
|
|
%%DATADIR%%/data/Etcode.dat
|
|
%%DATADIR%%/data/Evdw.dat
|
|
%%DATADIR%%/data/Ewhite-wimley.dat
|
|
%%DATADIR%%/data/embossre.equ
|
|
%%DATADIR%%/data/Emwfilter.dat
|
|
%%DATADIR%%/data/Emass.dat
|
|
%%DATADIR%%/data/Emassmod.dat
|
|
%%DATADIR%%/data/Matrices.nucleotide
|
|
%%DATADIR%%/data/Matrices.protein
|
|
%%DATADIR%%/data/Matrices.proteinstructure
|
|
%%DATADIR%%/emboss.default.template
|
|
%%DATADIR%%/test/data/aaindex1.test
|
|
%%DATADIR%%/test/data/prosite.dat
|
|
%%DATADIR%%/test/data/prosite.doc
|
|
%%DATADIR%%/test/data/prints.test
|
|
%%DATADIR%%/test/data/withrefm
|
|
%%DATADIR%%/test/data/site.dat
|
|
%%DATADIR%%/test/data/cutg.codon
|
|
%%DATADIR%%/test/data/dna.acedb
|
|
%%DATADIR%%/test/data/dna.aln
|
|
%%DATADIR%%/test/data/dna.asn1
|
|
%%DATADIR%%/test/data/dna.codata
|
|
%%DATADIR%%/test/data/dna.embl
|
|
%%DATADIR%%/test/data/dna.fasta
|
|
%%DATADIR%%/test/data/dna.fitch
|
|
%%DATADIR%%/test/data/dna.gcg
|
|
%%DATADIR%%/test/data/dna.gcg8
|
|
%%DATADIR%%/test/data/dna.genbank
|
|
%%DATADIR%%/test/data/dna.ig
|
|
%%DATADIR%%/test/data/dna.m-acedb
|
|
%%DATADIR%%/test/data/dna.m-codata
|
|
%%DATADIR%%/test/data/dna.m-embl
|
|
%%DATADIR%%/test/data/dna.m-fasta
|
|
%%DATADIR%%/test/data/dna.m-fasta-long
|
|
%%DATADIR%%/test/data/dna.m-ncbi
|
|
%%DATADIR%%/test/data/dna.m-strider
|
|
%%DATADIR%%/test/data/dna.msf
|
|
%%DATADIR%%/test/data/dna.msf8
|
|
%%DATADIR%%/test/data/dna.ncbi
|
|
%%DATADIR%%/test/data/dna.phylip
|
|
%%DATADIR%%/test/data/dna.phylip3
|
|
%%DATADIR%%/test/data/dna.staden
|
|
%%DATADIR%%/test/data/dna.strider
|
|
%%DATADIR%%/test/data/dna.text
|
|
%%DATADIR%%/test/data/feat.emft
|
|
%%DATADIR%%/test/data/feat.fasta
|
|
%%DATADIR%%/test/data/feat.pir
|
|
%%DATADIR%%/test/data/mw1.dat
|
|
%%DATADIR%%/test/data/mw2.dat
|
|
%%DATADIR%%/test/data/mw3.dat
|
|
%%DATADIR%%/test/data/paamir.pep
|
|
%%DATADIR%%/test/data/pax6_cdna.fasta
|
|
%%DATADIR%%/test/data/prot.acedb
|
|
%%DATADIR%%/test/data/prot.codata
|
|
%%DATADIR%%/test/data/prot.fasta
|
|
%%DATADIR%%/test/data/prot.gcg
|
|
%%DATADIR%%/test/data/prot.gcg8
|
|
%%DATADIR%%/test/data/prot.ig
|
|
%%DATADIR%%/test/data/prot.m-acedb
|
|
%%DATADIR%%/test/data/prot.m-codata
|
|
%%DATADIR%%/test/data/prot.m-fasta
|
|
%%DATADIR%%/test/data/prot.m-nbrf
|
|
%%DATADIR%%/test/data/prot.m-ncbi
|
|
%%DATADIR%%/test/data/prot.m-swiss
|
|
%%DATADIR%%/test/data/prot.nbrf
|
|
%%DATADIR%%/test/data/prot.ncbi
|
|
%%DATADIR%%/test/data/prot.swiss
|
|
%%DATADIR%%/test/data/prot.text
|
|
%%DATADIR%%/test/data/z83307.seq
|
|
%%DATADIR%%/test/data/aligna.dna
|
|
%%DATADIR%%/test/data/alignapart.dna
|
|
%%DATADIR%%/test/data/alignb.dna
|
|
%%DATADIR%%/test/data/aligna.prot
|
|
%%DATADIR%%/test/data/alignapart.prot
|
|
%%DATADIR%%/test/data/alignb.prot
|
|
%%DATADIR%%/test/data/tranalign.pep
|
|
%%DATADIR%%/test/data/tranalign.seq
|
|
%%DATADIR%%/test/embl/acnum.hit
|
|
%%DATADIR%%/test/embl/acnum.trg
|
|
%%DATADIR%%/test/embl/division.lkp
|
|
%%DATADIR%%/test/embl/entrynam.idx
|
|
%%DATADIR%%/test/embl/seqvn.hit
|
|
%%DATADIR%%/test/embl/seqvn.trg
|
|
%%DATADIR%%/test/embl/des.hit
|
|
%%DATADIR%%/test/embl/des.trg
|
|
%%DATADIR%%/test/embl/keyword.hit
|
|
%%DATADIR%%/test/embl/keyword.trg
|
|
%%DATADIR%%/test/embl/taxon.hit
|
|
%%DATADIR%%/test/embl/taxon.trg
|
|
%%DATADIR%%/test/embl/est.dat
|
|
%%DATADIR%%/test/embl/fun.dat
|
|
%%DATADIR%%/test/embl/hum1.dat
|
|
%%DATADIR%%/test/embl/inv.dat
|
|
%%DATADIR%%/test/embl/pln.dat
|
|
%%DATADIR%%/test/embl/pro.dat
|
|
%%DATADIR%%/test/embl/rod.dat
|
|
%%DATADIR%%/test/embl/sts.dat
|
|
%%DATADIR%%/test/embl/vrl.dat
|
|
%%DATADIR%%/test/embl/vrt.dat
|
|
%%DATADIR%%/test/genbank/acnum.hit
|
|
%%DATADIR%%/test/genbank/acnum.trg
|
|
%%DATADIR%%/test/genbank/division.lkp
|
|
%%DATADIR%%/test/genbank/entrynam.idx
|
|
%%DATADIR%%/test/genbank/seqvn.hit
|
|
%%DATADIR%%/test/genbank/seqvn.trg
|
|
%%DATADIR%%/test/genbank/des.hit
|
|
%%DATADIR%%/test/genbank/des.trg
|
|
%%DATADIR%%/test/genbank/keyword.hit
|
|
%%DATADIR%%/test/genbank/keyword.trg
|
|
%%DATADIR%%/test/genbank/taxon.hit
|
|
%%DATADIR%%/test/genbank/taxon.trg
|
|
%%DATADIR%%/test/genbank/gbbct1.seq
|
|
%%DATADIR%%/test/genbank/gbest1.seq
|
|
%%DATADIR%%/test/genbank/gbinv1.seq
|
|
%%DATADIR%%/test/genbank/gbpln1.seq
|
|
%%DATADIR%%/test/genbank/gbpln2.seq
|
|
%%DATADIR%%/test/genbank/gbpri1.seq
|
|
%%DATADIR%%/test/genbank/gbrod1.seq
|
|
%%DATADIR%%/test/genbank/gbsts1.seq
|
|
%%DATADIR%%/test/genbank/gbvrl1.seq
|
|
%%DATADIR%%/test/genbank/gbvrt.seq
|
|
%%DATADIR%%/test/gb/acnum.hit
|
|
%%DATADIR%%/test/gb/acnum.trg
|
|
%%DATADIR%%/test/gb/division.lkp
|
|
%%DATADIR%%/test/gb/entrynam.idx
|
|
%%DATADIR%%/test/gb/seqvn.hit
|
|
%%DATADIR%%/test/gb/seqvn.trg
|
|
%%DATADIR%%/test/gb/des.hit
|
|
%%DATADIR%%/test/gb/des.trg
|
|
%%DATADIR%%/test/gb/keyword.hit
|
|
%%DATADIR%%/test/gb/keyword.trg
|
|
%%DATADIR%%/test/gb/taxon.hit
|
|
%%DATADIR%%/test/gb/taxon.trg
|
|
%%DATADIR%%/test/gb/ba.ref
|
|
%%DATADIR%%/test/gb/ba.seq
|
|
%%DATADIR%%/test/gb/htg.ref
|
|
%%DATADIR%%/test/gb/htg.seq
|
|
%%DATADIR%%/test/pir/acnum.hit
|
|
%%DATADIR%%/test/pir/acnum.trg
|
|
%%DATADIR%%/test/pir/division.lkp
|
|
%%DATADIR%%/test/pir/entrynam.idx
|
|
%%DATADIR%%/test/pir/des.hit
|
|
%%DATADIR%%/test/pir/des.trg
|
|
%%DATADIR%%/test/pir/keyword.hit
|
|
%%DATADIR%%/test/pir/keyword.trg
|
|
%%DATADIR%%/test/pir/taxon.hit
|
|
%%DATADIR%%/test/pir/taxon.trg
|
|
%%DATADIR%%/test/pir/pir1.header
|
|
%%DATADIR%%/test/pir/pir1.names
|
|
%%DATADIR%%/test/pir/pir1.numbers
|
|
%%DATADIR%%/test/pir/pir1.offset
|
|
%%DATADIR%%/test/pir/pir1.ref
|
|
%%DATADIR%%/test/pir/pir1.seq
|
|
%%DATADIR%%/test/pir/pir2.header
|
|
%%DATADIR%%/test/pir/pir2.names
|
|
%%DATADIR%%/test/pir/pir2.numbers
|
|
%%DATADIR%%/test/pir/pir2.offset
|
|
%%DATADIR%%/test/pir/pir2.ref
|
|
%%DATADIR%%/test/pir/pir2.seq
|
|
%%DATADIR%%/test/pir/pir3.header
|
|
%%DATADIR%%/test/pir/pir3.names
|
|
%%DATADIR%%/test/pir/pir3.numbers
|
|
%%DATADIR%%/test/pir/pir3.offset
|
|
%%DATADIR%%/test/pir/pir3.ref
|
|
%%DATADIR%%/test/pir/pir3.seq
|
|
%%DATADIR%%/test/pir/pir4.header
|
|
%%DATADIR%%/test/pir/pir4.names
|
|
%%DATADIR%%/test/pir/pir4.numbers
|
|
%%DATADIR%%/test/pir/pir4.offset
|
|
%%DATADIR%%/test/pir/pir4.ref
|
|
%%DATADIR%%/test/pir/pir4.seq
|
|
%%DATADIR%%/test/swiss/seq.dat
|
|
%%DATADIR%%/test/swiss/acnum.hit
|
|
%%DATADIR%%/test/swiss/acnum.trg
|
|
%%DATADIR%%/test/swiss/division.lkp
|
|
%%DATADIR%%/test/swiss/entrynam.idx
|
|
%%DATADIR%%/test/swiss/seqvn.hit
|
|
%%DATADIR%%/test/swiss/seqvn.trg
|
|
%%DATADIR%%/test/swiss/des.hit
|
|
%%DATADIR%%/test/swiss/des.trg
|
|
%%DATADIR%%/test/swiss/keyword.hit
|
|
%%DATADIR%%/test/swiss/keyword.trg
|
|
%%DATADIR%%/test/swiss/taxon.hit
|
|
%%DATADIR%%/test/swiss/taxon.trg
|
|
%%DATADIR%%/test/swnew/acnum.hit
|
|
%%DATADIR%%/test/swnew/acnum.trg
|
|
%%DATADIR%%/test/swnew/division.lkp
|
|
%%DATADIR%%/test/swnew/entrynam.idx
|
|
%%DATADIR%%/test/swnew/seqvn.hit
|
|
%%DATADIR%%/test/swnew/seqvn.trg
|
|
%%DATADIR%%/test/swnew/des.hit
|
|
%%DATADIR%%/test/swnew/des.trg
|
|
%%DATADIR%%/test/swnew/keyword.hit
|
|
%%DATADIR%%/test/swnew/keyword.trg
|
|
%%DATADIR%%/test/swnew/taxon.hit
|
|
%%DATADIR%%/test/swnew/taxon.trg
|
|
%%DATADIR%%/test/swnew/new_seq.dat
|
|
%%DATADIR%%/test/swnew/upd_ann.dat
|
|
%%DATADIR%%/test/swnew/upd_seq.dat
|
|
%%DATADIR%%/test/wormpep/wormpep
|
|
%%DATADIR%%/test/wormpep/acnum.hit
|
|
%%DATADIR%%/test/wormpep/acnum.trg
|
|
%%DATADIR%%/test/wormpep/division.lkp
|
|
%%DATADIR%%/test/wormpep/entrynam.idx
|
|
%%DATADIR%%/test/wormpep/des.hit
|
|
%%DATADIR%%/test/wormpep/des.trg
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree/DragTree.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.PopupListener.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree/FileNode.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree/FileSaving.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/BuildJembossForm.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/ListFilePanel.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/SectionPanel.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/SetInFileCard.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/SetOutFileCard.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.DecimalNumberDocument.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.WholeNumberDocument.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/TextFieldSink.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/JembossComboPopup.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form/JembossComboPopup.myComboUI.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/FileChooser.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/OutputSequenceAttributes.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/SequenceFilter.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/TextAreaSink.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/startup/Database.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.HorizontalMenu.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/startup/Splash.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/BuildProgramMenu.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/ResultsMenuBar.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/SetUpMenuBar.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/ShowResultSet.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/ShowSavedResults.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/SwingWorker.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationFields.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationParam.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/AcdFunResolve.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/AcdVarResolve.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/Ajax.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/Dependent.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/ParseAcd.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/programs/JembossProcess.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/programs/ListFile.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/programs/ResultList.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/programs/RunEmbossApplication.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/AuthPopup.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/CallAjax.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/GetWossname.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/JembossRun.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/JembossSoapException.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/PendingResults.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/PrivateRequest.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/soap/ResListView.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/Jemboss.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/Jemboss.winExit.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/JembossLogo.html
|
|
%%DATADIR%%/jemboss/api/org/emboss/jemboss/JembossParams.html
|
|
%%DATADIR%%/jemboss/api/allclasses-frame.html
|
|
%%DATADIR%%/jemboss/api/deprecated-list.html
|
|
%%DATADIR%%/jemboss/api/getClasses.pl
|
|
%%DATADIR%%/jemboss/api/help-doc.html
|
|
%%DATADIR%%/jemboss/api/index-all.html
|
|
%%DATADIR%%/jemboss/api/index.html
|
|
%%DATADIR%%/jemboss/api/makeDocs.csh
|
|
%%DATADIR%%/jemboss/api/overview-tree.html
|
|
%%DATADIR%%/jemboss/api/package-list
|
|
%%DATADIR%%/jemboss/api/packages.html
|
|
%%DATADIR%%/jemboss/api/serialized-form.html
|
|
%%DATADIR%%/jemboss/api/stylesheet.css
|
|
%%DATADIR%%/jemboss/images/Backward_arrow_button.gif
|
|
%%DATADIR%%/jemboss/images/Forward_arrow_button.gif
|
|
%%DATADIR%%/jemboss/images/Go_button.gif
|
|
%%DATADIR%%/jemboss/images/Information_button.gif
|
|
%%DATADIR%%/jemboss/images/Jemboss_logo_greyback.gif
|
|
%%DATADIR%%/jemboss/images/Jemboss_logo_large.gif
|
|
%%DATADIR%%/jemboss/images/Jemboss_logo_small.gif
|
|
%%DATADIR%%/jemboss/images/Job_manager_button.gif
|
|
%%DATADIR%%/jemboss/images/Refresh_button.gif
|
|
%%DATADIR%%/jemboss/images/Refresh_button2.gif
|
|
%%DATADIR%%/jemboss/lib/axis/axis-ant.jar
|
|
%%DATADIR%%/jemboss/lib/axis/axis.jar
|
|
%%DATADIR%%/jemboss/lib/axis/commons-discovery.jar
|
|
%%DATADIR%%/jemboss/lib/axis/commons-logging.jar
|
|
%%DATADIR%%/jemboss/lib/axis/jaxrpc.jar
|
|
%%DATADIR%%/jemboss/lib/axis/log4j-1.2.8.jar
|
|
%%DATADIR%%/jemboss/lib/axis/saaj.jar
|
|
%%DATADIR%%/jemboss/lib/axis/servlet.jar
|
|
%%DATADIR%%/jemboss/lib/axis/wsdl4j.jar
|
|
%%DATADIR%%/jemboss/lib/README
|
|
%%DATADIR%%/jemboss/lib/activation.jar
|
|
%%DATADIR%%/jemboss/lib/jakarta-regexp-1.2.jar
|
|
%%DATADIR%%/jemboss/lib/mail.jar
|
|
%%DATADIR%%/jemboss/lib/xerces.jar
|
|
%%DATADIR%%/jemboss/lib/jalview.jar
|
|
%%DATADIR%%/jemboss/lib/JembossPrintAlignment.jar
|
|
%%DATADIR%%/jemboss/lib/grout.jar
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/AlignApplet.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutSequenceJPanel.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/AlignJFrame.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/Matrix.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/ColourJFrame.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/MatrixJFrame.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/ColourMenu.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PatternJFrame.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/ColourPanel.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PlotConsensus.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/Consensus.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PrettyPlotJFrame.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/ConsensusOptions.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PrintAlignmentImage.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GraphicSequenceCollection.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PrintAlignment.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/Paste.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutAlignJFrameEvent.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/Sequence.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutAlignJFrame.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/SequenceJPanel.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutAlignJFrameListener.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/SequenceNameJButton.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutGraphicSequenceCollectionEvent.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/SequenceProperties.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutGraphicSequenceCollection.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/SequenceReader.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutGraphicSequenceCollectionListener.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/SequenceSaver.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/GroutSequence.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/IDTableJFrame.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/editor/PrintableJTable.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/draw/Block.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/draw/PrintDNAImage.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/draw/DNADraw.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/draw/RestrictionEnzyme.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/draw/EmbossCirdnaReader.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/draw/Ticks.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/draw/GeneticMarker.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/draw/Wizard.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/draw/LineAttribute.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/graphics/Graph2DPlot.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/graphics/PrintPlot.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/DragTree.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/FileEditorDisplay.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/FileNode.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/FileSave.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/FileSaving.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/RemoteDragTree.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/RemoteFileNode.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/RemoteFileTreePanel.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/LocalAndRemoteFileTreeFrame.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree/LocalTreeToolBar.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/BuildJembossForm.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/ListFilePanel.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/SectionPanel.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/SetInFileCard.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/SetOutFileCard.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/TextFieldFloat.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/TextFieldInt.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/TextFieldSink.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/JembossComboPopup.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/MultiLineToolTipUI.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/PlafMacros.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/ReportFormat.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/AlignFormat.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/ApplicationNamePanel.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/LabelTextBox.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/form/Separator.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/FileChooser.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/OutputSequenceAttributes.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/SequenceFilter.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser/TextAreaSink.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/startup/Database.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/startup/ProgList.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/AdvancedOptions.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/ResultsMenuBar.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/ShowResultSet.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/BuildProgramMenu.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/SequenceData.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/ShowSavedResults.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/LaunchJalView.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/SequenceList.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/SwingWorker.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/MemoryComboBox.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/SetUpMenuBar.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/Browser.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/SplashThread.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/ScrollPanel.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/ImageIconJPanel.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/Favorites.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/gui/KeywordSearch.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/parser/acd/ApplicationFields.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/parser/acd/ApplicationParam.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/parser/AcdFunResolve.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/parser/AcdVariableResolve.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/parser/AcdVarResolve.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/parser/Ajax.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/parser/AjaxUtil.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/parser/Dependent.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/parser/ParseAcd.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/programs/BatchUpdateTimer.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/programs/JembossProcess.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/programs/ListFile.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/programs/ResultList.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/programs/ResultsUpdateTimer.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/programs/RunEmbossApplication.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/programs/RunEmbossApplication2.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/server/JembossServer.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/server/JembossFileServer.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/server/JembossThread.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/server/JembossAuthServer.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/server/JembossFileAuthServer.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/server/TestPublicServer.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/server/TestPrivateServer.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/server/AppendToLogFileThread.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/AuthPopup.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/JembossSoapException.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/CallAjax.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/PendingResults.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/GetWossname.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/PrivateRequest.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/JembossRun.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/ServerSetup.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/FileRoots.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/FileList.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/PublicRequest.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/GetACD.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/GetHelp.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/ShowDB.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/soap/MakeFileSafe.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/Jemboss.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/JembossLogo.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/JembossParams.java
|
|
%%DATADIR%%/jemboss/org/emboss/jemboss/JembossJarUtil.java
|
|
%%DATADIR%%/jemboss/resources/jemboss.properties
|
|
%%DATADIR%%/jemboss/resources/readme.html
|
|
%%DATADIR%%/jemboss/resources/readmeAlign.html
|
|
%%DATADIR%%/jemboss/resources/readmeDNADraw.html
|
|
%%DATADIR%%/jemboss/resources/results.html
|
|
%%DATADIR%%/jemboss/resources/version
|
|
%%DATADIR%%/jemboss/resources/filemgr.html
|
|
%%DATADIR%%/jemboss/resources/seqList.html
|
|
%%DATADIR%%/jemboss/utils/install-jemboss-server.sh
|
|
%%DATADIR%%/jemboss/utils/keys.sh
|
|
%%DATADIR%%/jemboss/utils/makeJar.csh
|
|
%%DATADIR%%/jemboss/utils/makeJNLP.sh
|
|
%%DATADIR%%/jemboss/utils/makeFileManagerJNLP.sh
|
|
%%DATADIR%%/jemboss/utils/template.html
|
|
%%DATADIR%%/jemboss/utils/README
|
|
%%DATADIR%%/jemboss/LICENSE
|
|
%%DATADIR%%/jemboss/readme.html
|
|
%%DATADIR%%/jemboss/runJemboss.sh
|
|
%%DATADIR%%/jemboss/README
|
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%/manuals
|
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/html
|
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs/text
|
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%/programs
|
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorials
|
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%
|
|
@dirrm %%DATADIR%%/acd
|
|
@dirrm %%DATADIR%%/data/AAINDEX
|
|
@dirrm %%DATADIR%%/data/CODONS
|
|
@dirrm %%DATADIR%%/data/REBASE
|
|
@dirrm %%DATADIR%%/data/PRINTS
|
|
@dirrm %%DATADIR%%/data/PROSITE
|
|
@dirrmtry %%DATADIR%%/data
|
|
@dirrm %%DATADIR%%/test/data
|
|
@dirrm %%DATADIR%%/test/embl
|
|
@dirrm %%DATADIR%%/test/genbank
|
|
@dirrm %%DATADIR%%/test/gb
|
|
@dirrm %%DATADIR%%/test/pir
|
|
@dirrm %%DATADIR%%/test/swiss
|
|
@dirrm %%DATADIR%%/test/swnew
|
|
@dirrm %%DATADIR%%/test/wormpep
|
|
@dirrm %%DATADIR%%/test
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/filetree
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/form
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/sequenceChooser
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui/startup
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/gui
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/parser/acd
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/parser
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/programs
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss/soap
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss/jemboss
|
|
@dirrm %%DATADIR%%/jemboss/api/org/emboss
|
|
@dirrm %%DATADIR%%/jemboss/api/org
|
|
@dirrm %%DATADIR%%/jemboss/api
|
|
@dirrm %%DATADIR%%/jemboss/images
|
|
@dirrm %%DATADIR%%/jemboss/lib/axis
|
|
@dirrm %%DATADIR%%/jemboss/lib
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/editor
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/draw
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/graphics
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/filetree
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/form
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/sequenceChooser
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui/startup
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/gui
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/parser/acd
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/parser
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/programs
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/server
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss/soap
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss/jemboss
|
|
@dirrm %%DATADIR%%/jemboss/org/emboss
|
|
@dirrm %%DATADIR%%/jemboss/org
|
|
@dirrm %%DATADIR%%/jemboss/resources
|
|
@dirrm %%DATADIR%%/jemboss/utils
|
|
@dirrm %%DATADIR%%/jemboss
|
|
@dirrmtry %%DATADIR%%
|
|
@dirrmtry bin
|
|
@dirrmtry include
|
|
@dirrmtry lib
|
|
@dirrmtry share/doc
|
|
@dirrmtry share
|