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Tifffile is a Python library to - store numpy arrays in TIFF (Tagged Image File Format) files, and - read image and metadata from TIFF-like files used in bioimaging. Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, STK, LSM, SGI, NIHImage, ImageJ, MicroManager, FluoView, ScanImage, SEQ, GEL, SVS, SCN, SIS, ZIF (Zoomable Image File Format), QPTIFF (QPI), NDPI, and GeoTIFF files. Image data can be read as numpy arrays or zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels. Numpy arrays can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form. A subset of the TIFF specification is supported, mainly 8, 16, 32 and 64-bit integer, 16, 32 and 64-bit float, grayscale and multi-sample images. Specifically, CCITT and OJPEG compression, chroma subsampling without JPEG compression, color space transformations, samples with differing types, or IPTC and XMP metadata are not implemented. WWW: https://github.com/cgohlke/tifffile
22 lines
1.1 KiB
Text
22 lines
1.1 KiB
Text
Tifffile is a Python library to
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- store numpy arrays in TIFF (Tagged Image File Format) files, and
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- read image and metadata from TIFF-like files used in bioimaging.
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Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, STK, LSM, SGI,
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NIHImage, ImageJ, MicroManager, FluoView, ScanImage, SEQ, GEL, SVS, SCN, SIS,
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ZIF (Zoomable Image File Format), QPTIFF (QPI), NDPI, and GeoTIFF files.
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Image data can be read as numpy arrays or zarr arrays/groups from strips, tiles,
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pages (IFDs), SubIFDs, higher order series, and pyramidal levels.
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Numpy arrays can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack
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compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled,
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predicted, or compressed form.
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A subset of the TIFF specification is supported, mainly 8, 16, 32 and 64-bit
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integer, 16, 32 and 64-bit float, grayscale and multi-sample images.
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Specifically, CCITT and OJPEG compression, chroma subsampling without JPEG
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compression, color space transformations, samples with differing types, or IPTC
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and XMP metadata are not implemented.
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WWW: https://github.com/cgohlke/tifffile
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