cb1a940d17
applications programming interface (API) to the NEXUS file format of Maddison, et al., 1997 (Syst. Biol. 46:590-621). NEXUS is a powerful and extensible format designed for use in evolutionary analysis, including the analysis of molecular sequence data as well as classical morphological and life-history data. NEXUS is the input or output format for software such as PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and so on. This package also contains the demonstration applications nexplot.pl (plot character data with a tree) and nextool.pl (allowing programmatic editing, e.g., selecting particular clades or subsets of data). WWW: http://search.cpan.org/dist/Bio-NEXUS/ PR: ports/137983 Submitted by: Wen Heping <wenheping at gmail.com>
35 lines
1.2 KiB
Text
35 lines
1.2 KiB
Text
bin/nex2text_tree.pl
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bin/nexplot.pl
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bin/nextool.pl
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%%SITE_PERL%%/Bio/NEXUS.pm
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%%SITE_PERL%%/Bio/NEXUS/DataBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/._Functions.pm
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%%SITE_PERL%%/Bio/NEXUS/CodonsBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/NotesBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/NHXCmd.pm
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%%SITE_PERL%%/Bio/NEXUS/HistoryBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/TaxUnit.pm
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%%SITE_PERL%%/Bio/NEXUS/CharactersBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/SpanBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/UnalignedBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/TaxUnitSet.pm
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%%SITE_PERL%%/Bio/NEXUS/DistancesBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/UnknownBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/Node.pm
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%%SITE_PERL%%/Bio/NEXUS/Matrix.pm
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%%SITE_PERL%%/Bio/NEXUS/Tree.pm
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%%SITE_PERL%%/Bio/NEXUS/WeightSet.pm
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%%SITE_PERL%%/Bio/NEXUS/SetsBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/TaxaBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/TreesBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/AssumptionsBlock.pm
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%%SITE_PERL%%/Bio/NEXUS/Block.pm
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%%SITE_PERL%%/Bio/NEXUS/Functions.pm
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%%SITE_PERL%%/Bio/NEXUS/Util/Exceptions.pm
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%%SITE_PERL%%/Bio/NEXUS/Util/Logger.pm
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%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/NEXUS/.packlist
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@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/NEXUS
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@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
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@dirrmtry %%SITE_PERL%%/Bio/NEXUS/Util
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@dirrmtry %%SITE_PERL%%/Bio/NEXUS
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@dirrmtry %%SITE_PERL%%/Bio
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