6b63ef7436
These are the command-line bioinformatics utilities associated with the UCSC genome browser. Care has been taken to install only the freely available tools. However, the license information at https://genome.ucsc.edu/license/ is not entirely clear and we may add non-free utilities in the future. Contact UCSC if you are using this port for commercial purposes.
28 lines
752 B
Bash
Executable file
28 lines
752 B
Bash
Executable file
#!/bin/sh -e
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ucsc_bin=%%PREFIX%%/userapps/bin
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cat << EOM
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Adding $ucsc_bin to \$PATH.
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UCSC kent utils contains commands that conflict with other tools, including
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at least "calc", "mktime", and "stringify".
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The other commands with these names may serve entirely different functions
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and will not be accessible while running this shell unless you refer to them
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by their absolute path name (e.g. /usr/local/bin/calc), which is not portable,
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BTW, so don't hard-code such paths into your scripts.
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Type "exit" or "Ctrl+D" to return to your normal shell.
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EOM
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export PATH=${ucsc_bin}:$PATH
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# FIXME: Update shell prompts to include (ucsc-kent)?
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# Invoke the user's chosen shell
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if echo $SHELL | egrep -q '/t?csh'; then
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args='-f'
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fi
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exec $SHELL $args
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