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freebsd-ports/biology
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John Marino d0bb05930a Reset the 99 ports still listed under sylvio@ 
Sylvio's last commit was 17 months ago, a full 5 months after all of his
ports could have been reset per policy.  Given the push to complete
staging (48 ports are still unstaged, something like 70+ have already
been staged by other committers) and given that PRs are automatically
assigned but never addressed, it's better just to reset all the ports and
PRs so that it's clear to others that these ports are free to maintain.

Approved by:	portmgr (implicit)
2014-06-11 18:55:29 +00:00
..
ariadne Stage support 2013-11-12 21:54:36 +00:00
artemis Support stage 2014-01-20 23:06:48 +00:00
avida - Fix build with clang 2013-11-27 16:07:51 +00:00
babel Support stage 2014-01-15 22:44:13 +00:00
biococoa Update BioCocoa to the latest release. 2013-10-08 18:34:45 +00:00
biojava - add stage support 2014-06-01 10:37:22 +00:00
blast Multiple ports: reset maintainers 2014-05-26 02:33:38 +00:00
blat Convert b* to USES=zip 2014-03-07 15:52:40 +00:00
boinc-simap Drop maintainership BOINC ports, old machine running them gave up. 2014-02-04 17:54:29 +00:00
chemeq Stage support 2014-01-18 15:55:42 +00:00
clustalw Multiple ports: reset maintainers 2014-05-26 02:33:38 +00:00
consed Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
crux Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
embassy biology/embassy: specify post-extraction with ${TAR} 2014-05-29 10:47:58 +00:00
emboss Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
fasta - Add staging support 2014-03-24 09:01:39 +00:00
fasta3 biology/fasta3: Checked new distfile and regenerated distinfo to unbreak 2014-03-02 10:58:50 +00:00
fastdnaml Support staging 2014-02-16 11:32:43 +00:00
fluctuate Support staging 2014-02-16 11:35:00 +00:00
garlic - Convert USE_GMAKE to USES 2014-03-13 07:41:34 +00:00
gff2ps Add staging support 2014-03-23 17:43:41 +00:00
gmap Support stage 2013-12-10 17:21:46 +00:00
gperiodic Add staging support 2014-03-23 18:09:23 +00:00
grappa - Respect CC/CFLAGS 2013-12-20 13:27:13 +00:00
hmmer Stage support 2013-12-30 18:08:14 +00:00
iolib - I forgot to svn add a new patch 2014-05-31 18:03:08 +00:00
jalview Fix properties on pkg-plist 2014-01-21 23:18:05 +00:00
lagan - Fix build 2013-11-27 13:16:47 +00:00
lamarc - rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk 2013-12-30 20:55:18 +00:00
libsbml - Update to 5.10.0 2014-05-13 07:04:17 +00:00
linux-foldingathome
mafft Add DOCS and EXAMPLE options to biology/mafft 2014-05-31 04:18:18 +00:00
mapm3 - Fix build with clang 2014-01-12 19:07:28 +00:00
migrate - Stagify; cleanup Makefile and reorder the knobs a bit 2014-01-29 12:08:29 +00:00
molden Catch a couple of missing convertsion to :tu/:tl 2014-05-05 11:15:53 +00:00
mopac - Add staging support 2014-03-23 18:10:41 +00:00
mrbayes Support stage 2013-12-10 17:54:12 +00:00
mummer Reset the 99 ports still listed under sylvio@ 2014-06-11 18:55:29 +00:00
muscle - add stage support 2014-06-01 11:05:43 +00:00
ncbi-toolkit Add staging support 2014-03-23 20:50:54 +00:00
njplot - add stage support 2014-06-01 11:26:39 +00:00
ortep3 Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
p5-AcePerl Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-Bio-ASN1-EntrezGene - add stage support 2014-01-06 09:57:19 +00:00
p5-Bio-Das - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-Das-Lite - fix pkg-plist 2014-01-30 07:34:25 +00:00
p5-Bio-GFF3 - Fix PLIST 2014-03-26 14:23:09 +00:00
p5-Bio-Glite - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-Graphics Stagify, remove BROKEN. 2014-06-07 01:54:41 +00:00
p5-Bio-MAGETAB - update to 1.31 2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS - Stage support 2014-01-31 12:47:06 +00:00
p5-Bio-Phylo - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-SCF Remove all the bootstrap files (.bs) from the plists. 2014-06-10 12:14:12 +00:00
p5-bioperl - Update to 1.6.923 2014-05-30 15:46:05 +00:00
p5-bioperl-run Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
paml - Update to 4.8 2014-04-05 10:56:52 +00:00
phd2fasta Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
phrap Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phred Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phylip The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
phyml - Stage support 2014-01-31 12:32:55 +00:00
platon Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
plink Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
plinkseq Convert to dos2unix 2014-03-07 11:37:35 +00:00
povchem Convert to USES=dos2unix 2013-11-18 13:45:44 +00:00
primer3 Quote ${CC} and similar variables in MAKE_ARGS. 2014-05-20 19:32:39 +00:00
protomol The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
psi88 Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-biopython - Stage 2014-04-27 01:59:47 +00:00
pycogent - Stage support [1] 2014-05-02 14:00:13 +00:00
pyfasta - Update to 0.5.2 2014-04-06 04:05:43 +00:00
pymol The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
python-nexus Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
recombine - Support staging 2014-02-16 11:39:42 +00:00
ruby-bio Support stage 2014-04-07 13:01:26 +00:00
seaview - Update to 4.5.2 2014-06-04 06:28:56 +00:00
seqan - add stage support 2014-06-01 11:42:17 +00:00
seqio Support staging 2014-02-16 11:42:09 +00:00
seqtools Remove all space characters from Makefile assignments. 2014-06-08 19:51:27 +00:00
sim4 Support staging 2014-02-16 11:43:07 +00:00
ssaha biology/ssaha: undeprecate, this port fetches and builds fine. 2014-03-09 09:39:50 +00:00
t_coffee Remove indefinite articles and trailing periods from COMMENT, plus 2014-06-09 11:21:52 +00:00
tinker - Un-break fetch stage: the name scheme of the source tarballs has changed 2014-04-22 19:28:18 +00:00
treepuzzle - Remove NO_STAGE as these have been tested to be safe 2013-09-25 00:54:08 +00:00
treeviewx Unbreak 2014-06-04 20:08:15 +00:00
tRNAscan-SE Support stage 2014-05-05 10:26:15 +00:00
ugene Update to version 1.13.1. 2014-03-07 07:39:20 +00:00
velvet - add stage support 2014-06-01 11:33:57 +00:00
wise - Add staging support 2014-03-24 10:46:35 +00:00
xmolwt Add staging support 2014-03-24 11:06:56 +00:00
Makefile Remove expired ports: 2014-04-18 11:17:45 +00:00