69656bf0d7
SRA tools is a toolkit for using data in the INSDC Sequence Read Archives. SRAs operated by International Nucleotide Sequence Database Collaboration houses sequence reads and alignments generated by "next-gen" sequencers. This port is a bit convoluted due to the fact that the sra-tools build requires access to the ncbi-vdb source tree. Hence, ncbi-vdb is treated as a submodule here rather than a separate library port. We are working with upstream with hope for long-term improvements.
57 lines
838 B
Text
57 lines
838 B
Text
bin/abi-dump
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bin/abi-load
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bin/align-cache
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bin/align-info
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bin/bam-load
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bin/cache-mgr
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bin/ccextract
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bin/cg-load
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bin/check-corrupt
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bin/copycat
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bin/fasterq-dump
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bin/fastq-dump
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bin/fastq-load
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bin/helicos-load
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bin/illumina-dump
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bin/illumina-load
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bin/kar
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bin/kar+
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bin/kar+meta
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bin/kdb-index
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bin/kdbmeta
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bin/kget
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bin/latf-load
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bin/make-read-filter
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bin/md5cp
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bin/ngs-pileup
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bin/pacbio-correct
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bin/pacbio-loadxml
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bin/prefetch
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bin/qual-recalib-stat
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bin/rcexplain
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bin/read-filter-redact
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bin/sam-dump
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bin/samview
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bin/schema-replace
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bin/sff-dump
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bin/sff-load
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bin/sra-pileup
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bin/sra-sort
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bin/sra-sort-cg
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bin/sra-stat
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bin/srapath
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bin/sratools
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bin/srf-load
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bin/test-read-write-cursor
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bin/test-sra
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bin/vdb-config
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bin/vdb-copy
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bin/vdb-decrypt
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bin/vdb-diff
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bin/vdb-dump
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bin/vdb-encrypt
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bin/vdb-lock
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bin/vdb-passwd
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bin/vdb-sql
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bin/vdb-unlock
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bin/vdb-validate
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