freebsd-ports/science
Raphael Kubo da Costa 47bf224484 qt4-moc: Add more Boost include guards to moc's definition list.
In preparation for updating Boost to 1.60, add include guards from more Boost
headers to the list of macros that moc automatically defines when processing
files. As explained in r408911, Qt4's moc cannot parse some constructs used by
a few Boost headers, so we define their include guards to make moc skip them.

This is a cleaner approach that allows us to largely revert r408472, r408473,
r408474, r408475, r408502, r408773 and r408419, which added several patches to
many ports to work around this moc bug.

PR:		199601
PR:		208322
2016-03-24 10:31:07 +00:00
..
2d-rewriter Cleanup GH_* and variables order. 2015-12-29 14:30:46 +00:00
afni Update to 2015.11.13. 2016-02-27 22:03:29 +00:00
avogadro qt4-moc: Add more Boost include guards to moc's definition list. 2016-03-24 10:31:07 +00:00
bddsolve science/bddsolve: Set environment, use CXXFLAGS, cleanup 2015-02-25 12:01:52 +00:00
bft
bodr Cleanup plist 2014-11-12 18:48:53 +00:00
brian - Update to 1.4.3 2016-03-04 02:06:45 +00:00
buddy Remove Author from pkg-descr and white space fixes 2015-03-02 23:41:59 +00:00
cdcl Cleanup plist 2014-11-12 18:48:53 +00:00
cdf science/cdf: document ncurses requirement (USES+=ncurses) 2016-02-01 06:50:21 +00:00
cdo - Update to 1.7.1 2016-03-06 06:18:56 +00:00
cgnslib - Update to 1.8.15 2015-05-24 08:10:28 +00:00
cgribex - Use INSTALL_TARGET=install-strip instead of STRIP_CMD 2015-01-19 19:51:01 +00:00
checkmol Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
chemical-mime-data - Fix leftover files generated by shared-mime-info 2015-08-14 13:37:02 +00:00
chemtool Cleanup plist 2014-11-12 18:48:53 +00:00
chemtool-devel Cleanup plist 2014-11-12 18:48:53 +00:00
clhep science/clhep: Update version 2.2.0.6=>2.2.0.8 2015-06-17 08:34:24 +00:00
colt
crf++ MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
dcl Cleanup plist 2014-11-12 18:48:53 +00:00
devisor - Switch to options helpers 2015-09-24 21:19:27 +00:00
dlpoly-classic - Update to 1.10.2 2016-02-06 13:45:05 +00:00
ecs - Update to 1.8.15 2015-05-24 08:10:28 +00:00
epte
fastcap Cleanup plist 2014-11-12 18:48:53 +00:00
fasthenry Cleanup plist 2014-11-12 18:48:53 +00:00
fisicalab Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
fvcom - Update maintainer mail address 2015-12-11 08:48:56 +00:00
fvcom-mpi - Update to 1.10.2 2016-02-06 13:45:05 +00:00
fvm - Update to 1.8.15 2015-05-24 08:10:28 +00:00
gchemutils MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
getdp - Update to 2.8.0. 2016-03-11 00:57:24 +00:00
ghemical Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
ghmm - Update to 0.9.r3 2015-09-18 06:16:31 +00:00
gnudatalanguage Upgrade to 0.9.6v2. 2016-01-07 20:48:42 +00:00
gramps Move devel/py-icu to devel/py-pyicu 2016-03-19 17:11:58 +00:00
grib_api - Update to 1.13.1 2015-06-15 14:42:53 +00:00
gromacs - Update to 5.0.6 2015-08-16 21:31:41 +00:00
gsmc Reassign to hamradio@ 2015-08-18 20:37:35 +00:00
gtamsanalyzer Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
gwyddion - Update to 2.44 2016-01-15 15:37:21 +00:00
h5utils - Update to 1.8.15 2015-05-24 08:10:28 +00:00
harminv - Switch to guile2 2015-03-10 20:45:19 +00:00
hdf Reformat port description text and split it into three paragraphs to improve 2015-09-10 17:11:12 +00:00
hdf5 - Convert to new test framework 2015-10-01 15:56:04 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.10.2 2015-08-20 23:02:14 +00:00
InsightToolkit Update to 4.9.0. 2016-02-12 11:41:39 +00:00
isaac-cfd
jmol Mark a few ports BROKEN: unfetchable 2015-11-09 12:59:03 +00:00
jstrack - Add empty directory to plist, sort plist 2015-09-09 14:53:30 +00:00
kalzium Change header installation location for kdelibs4-based ports. 2016-03-15 12:35:56 +00:00
kst2 Convert my ports to new options helpers 2015-08-25 10:03:08 +00:00
lamprop
libctl science/libctl: update to 3.2.2 2015-01-04 12:56:56 +00:00
libghemical - Upadate biology/mopac to version 1.15 2014-12-16 22:10:23 +00:00
libint - Update to version 1.1.6 2015-10-24 17:55:23 +00:00
libkml - Update BUILD_DEPENDS: remove redundant LOCALBASE/bin 2015-11-04 20:17:14 +00:00
liblinear science/liblinear: Update to version 2.1. 2016-03-09 16:44:37 +00:00
liboglappth Remove trailing whitespace from Makefiles, M-X. 2015-10-08 15:12:22 +00:00
libquantum Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
libsvm science/libsvm: Update to version 3.21. 2016-03-09 16:43:49 +00:00
libsvm-python Remove Author from pkg-descr and white space fixes 2015-03-02 23:41:59 +00:00
libxc Add a port of Libxc, a library of exchange-correlation functionals for 2015-10-26 10:10:10 +00:00
linsmith Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
massxpert Drop USES=iconv. 2015-09-11 09:43:07 +00:00
mbdyn - Use blaslapack 2015-02-05 22:51:22 +00:00
mcstas - Remove unneeded @dir's 2015-12-23 20:39:53 +00:00
mcstas-comps science/mcstats[-comps]: update 2.1 -> 2.2a 2015-11-12 02:29:59 +00:00
medit Fix ports that confused the meaning of WRKDIR and WRKSRC. 2015-11-05 12:36:25 +00:00
meep Fix build. Options helpers cannot be used here. 2015-08-03 17:55:15 +00:00
mei Cleanup plist 2014-11-12 18:48:53 +00:00
metaf2xml science/metaf2xml: update 1.57 -> 1.58 2016-01-04 13:49:17 +00:00
minc2 - Update to 1.8.15 2015-05-24 08:10:28 +00:00
mol2ps Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
mpb - Update to 1.8.15 2015-05-24 08:10:28 +00:00
mpqc - Add missing manpage 2015-10-01 07:04:30 +00:00
mpqc-mpich - Add missing manpage 2015-10-01 07:04:30 +00:00
ncs Upgrade ncs to 2.0.8 with its dependencies. 2015-05-14 17:31:29 +00:00
netcdf science/netcdf: document ncurses requirement (USES+=ncurses) 2016-01-30 22:45:36 +00:00
netcdf-cxx - Use USES=localbase 2015-10-19 20:21:01 +00:00
netcdf-fortran - Update to 4.4.3 2016-01-23 15:14:51 +00:00
nifticlib - Update maintainer mail address 2015-12-11 08:48:56 +00:00
openbabel Convert my ports to new options helpers 2015-08-25 10:03:08 +00:00
openkim - Update maintainer mail address 2015-12-11 08:48:56 +00:00
orthanc Update CMake to 3.5.0. 2016-03-19 14:41:38 +00:00
orthanc-dicomweb Update to 0.2. 2016-03-16 10:38:08 +00:00
orthanc-postgresql Update to 2.0. 2016-03-16 10:38:52 +00:00
orthanc-webviewer Update to 2.1. 2016-03-16 10:39:42 +00:00
p5-Algorithm-SVMLight Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-3DBuilder Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Bond-Find Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Canonicalize Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Elements Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-MDLMol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-Mopac Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-PDB Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SLN Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SMARTS Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-SMILES - Fix shebangs 2015-05-28 18:15:01 +00:00
p5-Chemistry-File-VRML Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-File-XYZ Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-FormulaPattern Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-InternalCoords Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Isotope Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-MacroMol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-MidasPattern Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Mok Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-Chemistry-Mol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Pattern Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Reaction Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Chemistry-Ring Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Geo-BUFR Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-Geo-Coordinates-Converter MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
p5-Geo-Coordinates-Converter-iArea - Add NO_ARCH 2015-10-03 17:11:36 +00:00
p5-Geo-ReadGRIB Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Geo-WebService-Elevation-USGS - Update to 0.105 2016-01-17 14:09:11 +00:00
p5-Mcstas-Tools Add new port p5-Mcstas-Tools, a general tool for simulating neutron scattering instruments and experiments 2015-11-20 23:34:39 +00:00
p5-PerlMol Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Physics-Unit Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
paje Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
paraview Convert to USES=jpeg 2015-06-22 18:33:20 +00:00
pnetcdf - Update to 1.10.2 2016-02-06 13:45:05 +00:00
psychopy - Update to 1.83.04 2016-02-16 02:01:07 +00:00
pulseview - Bump PORTREVISION after libzip update 2015-08-28 10:48:41 +00:00
py-cdo - Update to 1.3.0 2016-01-23 15:14:42 +00:00
py-coards
py-DendroPy Update to 4.0.3 2015-12-25 12:30:50 +00:00
py-h5py - Update to 2.5.0 2015-12-11 20:19:10 +00:00
py-hcluster - Add LICENSE 2015-09-14 12:20:09 +00:00
py-mdp Remove UNIQUENAME and LATEST_LINK. 2015-08-17 14:20:40 +00:00
py-mlpy Canonicalize some dependencies on numpy 2015-01-23 15:21:52 +00:00
py-netCDF4 - Update to 1.8.15 2015-05-24 08:10:28 +00:00
py-obspy - Update to 1.0.0 2016-03-19 09:27:25 +00:00
py-paida
py-pupynere
py-pyaixi - Update to 1.0.4 2015-12-10 13:59:33 +00:00
py-pydap Deprecate ports broken for more than 6 months 2016-03-13 18:45:42 +00:00
py-pydicom - Fix shebangs 2015-06-05 21:10:18 +00:00
py-pysal science/py-pysal: Avoid interactive build possibility 2016-02-07 13:24:18 +00:00
py-pyteomics Rename my ports to comply with Python ports policy 2015-11-02 09:24:50 +00:00
py-pyteomics.biolccc Rename my ports to comply with Python ports policy 2015-11-02 09:24:50 +00:00
py-scikit-fuzzy Fuzzy logic toolkit for SciPy. 2015-12-31 13:41:14 +00:00
py-scikit-learn Update to version 0.17. 2015-12-07 12:05:17 +00:00
py-scikit-sparse - Fix build when using python 3.x 2015-07-26 15:11:39 +00:00
py-scimath - Unbreak 2015-03-14 15:07:54 +00:00
py-scipy - Update to 0.16.1 2015-11-09 18:44:23 +00:00
py-ws2300 - Add missing files to plist 2015-06-05 21:10:48 +00:00
pybrain - Update to 0.3.3 2016-01-19 05:56:29 +00:00
pycdf - Strip library 2015-06-03 16:51:58 +00:00
pynn - Update to 0.8.0 2015-12-11 00:44:01 +00:00
qcl Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk - Add new port: science/R-cran-cmprsk 2015-11-08 05:46:50 +00:00
R-cran-DCluster - Update to 0.2-7 2015-06-13 05:45:48 +00:00
R-cran-e1071 - Update to 1.6-7 2015-08-08 07:13:44 +00:00
R-cran-eco
R-cran-Epi - Update to 2.0 2016-01-26 01:48:17 +00:00
R-cran-epicalc
R-cran-etm - Add new port: science/R-cran-etm 2015-11-08 06:15:14 +00:00
R-cran-snow - Update to 0.4-1 2015-12-06 11:01:46 +00:00
R-cran-som
rubygem-ai4r Set NO_ARCH for remaining rubygem-* ports with no arch dependent files 2015-07-02 16:01:06 +00:00
rubygem-cdo - Update to 1.3.0 2016-01-23 15:14:46 +00:00
rubygem-ruby-dcl science/rubygem-ruby-dcl: Fix category. 2015-03-09 17:36:19 +00:00
rubygem-ruby-netcdf - Move science/rubygem-netcdf to science/rubygem-ruby-netcdf 2015-05-24 15:35:51 +00:00
sigrok-cli - Bump PORTREVISION after libzip update 2015-08-28 10:48:41 +00:00
sigrok-firmware Update ports in the s* categores to not use GH_COMMIT. 2015-05-07 17:41:23 +00:00
sigrok-firmware-fx2lafw cleanup plist 2014-12-20 19:35:10 +00:00
sigrok-firmware-utils Switch default python3 version from 3.3 to 3.4. 2015-01-10 23:15:27 +00:00
silo - Update to 1.8.15 2015-05-24 08:10:28 +00:00
simlib - Strip library 2015-05-17 14:43:37 +00:00
simsmith MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
step Update KDE SC to 4.14.3 2015-03-11 23:11:47 +00:00
svmlight - Add LICENSE 2015-03-07 03:18:42 +00:00
szip - Convert to new test framework 2015-10-01 15:56:21 +00:00
udunits - Update to 2.2.20 2015-10-27 15:50:25 +00:00
v_sim Part 1 of adding USE_GNOME=intltool to ports that require it. 2015-08-02 20:23:55 +00:00
veusz
vmd 3 ports categories: Remove $PTHREAD_LIBS 2015-03-24 22:17:41 +00:00
voro++ - Update maintainer mail address 2015-12-11 08:48:56 +00:00
xfce4-equake-plugin - Update to 1.3.8 2015-08-19 04:38:46 +00:00
xmakemol cleanup plist 2014-12-20 19:35:10 +00:00
Makefile Fuzzy logic toolkit for SciPy. 2015-12-31 13:41:14 +00:00