Joseph Mingrone 92b051a290 biology/diamond: Update to 2.1.9 ... Changelog: https://github.com/bbuchfink/diamond/releases/tag/v2.1.9 Sponsored by: The FreeBSD Foundation		2024-02-04 15:41:51 -04:00
..
abyss
ad2vcf
artemis
atac-seq
augustus	*/*: bump PORTREVISION after the upgrade to SuiteSparse	2024-01-28 13:02:23 +01:00
avida
babel
bamtools
bamutil
barrnap
bbmap
bcf-score
bcftools
bedtools
bfc
bifrost
bio-mocha
bioawk
biococoa
biolibc
biolibc-tools
bioparser
biosig	*/*: bump PORTREVISION after the upgrade to SuiteSparse	2024-01-28 13:02:23 +01:00
biosoup
biostar-tools
bolt-lmm
bowtie
bowtie2
btllib
bwa
canu
cd-hit
cdbfasta
checkm
chip-seq
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond	biology/diamond: Update to 2.1.9	2024-02-04 15:41:51 -04:00
dsr-pdb
edlib
emboss
erminej
exonerate
fasda
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastq-trim
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk
gcta
gemma
generand
gff2ps
gffread
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite	biology/hhsuite: Fix build on some systems by adding missing C++ #include statement	2024-02-04 01:24:22 -08:00
hisat2
hmmer
htslib
hyphy
igv
infernal
iolib
iqtree
jalview
jellyfish
kallisto
kmcp
lamarc
libbigwig
libcombine
libgff
libgtextutils
libneurosim
libnuml
libsbml
libsedml
linux-foldingathome
locarna
mafft
mapm3
mashmap
megahit
metaeuk	biology/metaeuk: Broken on powerpc64le	2024-02-04 10:27:53 -08:00
migrate
minimap2
mmseqs2
molden
mothur
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-entrez-direct
ncbi-toolkit
ncbi-vdb
ngs-sdk	biology/ngs-sdk: Not for powerpc, powerpc64le	2024-02-02 13:33:37 -08:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbseqan
peak-classifier
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-bcbio-gff
py-biom-format
py-biopython
py-biosig
py-bx-python	biology/py-bx-python: update to 0.10.0	2024-01-29 01:08:29 +03:00
py-crossmap
py-cutadapt
py-deeptools
py-deeptoolsintervals
py-dna-features-viewer
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-htseq
py-libnuml
py-libsedml
py-loompy
py-macs2
py-macs3
py-mrcfile
py-multiqc
py-newick	biology/py-newick: Add new port	2024-02-03 00:58:29 +00:00
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pyrodigal
py-pysam
py-PySCeS
py-python-libsbml
py-pywgsim
py-resdk
py-scikit-bio
py-valerius
py-xenaPython
pyfasta
python-nexus	biology/python-nexus: Update to 2.9.0 and fix build with python-3.11	2024-02-03 00:58:29 +00:00
R-cran-Biobase
R-cran-BiocGenerics
R-cran-BiocManager
rainbow
rampler
readseq
rna-seq
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
salmon
sam2pairwise
samtools
scrm
seaview
seqan
seqan-apps
seqan1
seqan3
seqkit
seqtk
seqwish
sigviewer
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps
ugene
unikmer
vcf-split
vcf2hap
vcflib
vcftools
velvet
viennarna
vsearch
vt
wfa2-lib
wise
Makefile	biology/py-newick: Add new port	2024-02-03 00:58:29 +00:00