139 lines
3.8 KiB
Makefile
139 lines
3.8 KiB
Makefile
# New ports collection makefile for: emboss
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# Date created: 31 July 2000
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# Whom: Johann Visagie <johann@egenetics.com>
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#
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# $FreeBSD$
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#
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PORTNAME= emboss
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PORTVERSION= 2.4.1
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CATEGORIES= biology
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MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/old/ \
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ftp://ftp.es.embnet.org/pub/software/emboss/EMBOSS/ \
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ftp://ftp.ebi.ac.uk/pub/software/unix/EMBOSS/
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DISTFILES= ${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX}
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DIST_SUBDIR= ${PORTNAME}
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EXTRACT_ONLY= ${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX}
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MAINTAINER= wjv@FreeBSD.org
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LIB_DEPENDS= gd.2:${PORTSDIR}/graphics/gd
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USE_SUBMAKE= yes
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USE_GMAKE= yes
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GNU_CONFIGURE= yes
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INSTALLS_SHLIB= yes
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USE_XLIB= yes
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USE_MOTIF= yes
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PKGMESSAGE= ${WRKDIR}/pkg-message
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.if exists(${WRKDIRPREFIX}${.CURDIR}/Makefile.inc)
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.include "${WRKDIRPREFIX}${.CURDIR}/Makefile.inc"
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.endif
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CONFIGURE_ENV+= CPPFLAGS="-I${LOCALBASE}/include/gd" \
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LIBS="-L${LOCALBASE}/lib -L${X11BASE}/lib"
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SCRIPTS_ENV+= WRKDIRPREFIX="${WRKDIRPREFIX}" \
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MKDIR="${MKDIR}" RM="${RM}"
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WRKSRC= ${WRKDIR}/${PORTNAME:U}-${PORTVERSION}
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EMBASSY_WRKDIR= ${WRKSRC}/EMBASSY
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EMNU_VERSION= 1.0.5
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HMMER_VERSION= 2.1.1
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MEME_VERSION= 2.3.1
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MSE_VERSION= 0.0.4
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TOPO_VERSION= 0.1
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PHYLIP_VERSION= 3.573c
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DOC_DIRS= doc/manuals doc/tutorials doc/programs/text doc/programs/html
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CONFIG_FILE= ${WRKSRC}/emboss/emboss.default.template
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.for app in EMNU HMMER MEME MSE PHYLIP TOPO
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SCRIPTS_ENV+= ${app}_VERSION="${${app}_VERSION}"
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.if defined(WITH_${app})
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APPLIST+= ${app}
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${app}_WRKSRC= ${EMBASSY_WRKDIR}/${app}-${${app}_VERSION}
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${app}_DISTFILE=${app}-${${app}_VERSION}${EXTRACT_SUFX}
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DISTFILES+= ${${app}_DISTFILE}
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PLIST_${app}= ""
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.else
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PLIST_${app}= "@comment "
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.endif
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PLIST_SUB+= PLIST_${app}=${PLIST_${app}}
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.endfor
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# Jemboss support is a work in progress.
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#
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#.if defined(WITH_JEMBOSS)
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#USE_JAVA= 1.3+
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#CONFIGURE_ARGS+= --with-java=${JAVA_HOME}/include \
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# --with-javaos=${JAVA_HOME}/include/${JAVA_OS:L}
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#CONFIGURE_ENV+= PATH=${PATH}:${JAVA_HOME}/bin
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#MAKE_ENV+= PATH=${PATH}:${JAVA_HOME}/bin
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#JEMBOSS_WRKSRC= ${WRKSRC}/jemboss
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#.endif
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pre-fetch:
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@ ${SETENV} ${SCRIPTS_ENV} ${SH} ${SCRIPTDIR}/configure.${PORTNAME}
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post-extract:
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.for app in ${APPLIST}
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@ ${MKDIR} ${EMBASSY_WRKDIR}
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@ cd ${EMBASSY_WRKDIR} && ${EXTRACT_CMD} ${EXTRACT_BEFORE_ARGS} \
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${_DISTDIR}/${${app}_DISTFILE} ${EXTRACT_AFTER_ARGS}
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@ if [ `id -u` = 0 ]; then \
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${CHMOD} -R ug-s ${${app}_WRKSRC}; \
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${CHOWN} -R 0:0 ${${app}_WRKSRC}; \
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fi
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.endfor
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post-patch:
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.for DIR in ${DOC_DIRS}
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@ ${PERL} -pi.orig -e \
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's#\$$\(prefix\)/share/\$$\(PACKAGE\)/doc#\$$\(datadir\)/doc/\$$\(PACKAGE\)#' \
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${WRKSRC}/${DIR}/Makefile.in
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.endfor
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post-configure:
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.for app in ${APPLIST}
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@ cd ${${app}_WRKSRC} && \
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${SETENV} CC="${CC}" CXX="${CXX}" CFLAGS="${CFLAGS}" \
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CXXFLAGS="${CXXFLAGS}" \
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INSTALL="/usr/bin/install -c -o ${BINOWN} -g ${BINGRP}" \
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INSTALL_DATA="${INSTALL_DATA}" \
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INSTALL_PROGRAM="${INSTALL_PROGRAM}" \
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INSTALL_SCRIPT="${INSTALL_SCRIPT}" \
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${CONFIGURE_ENV} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS}
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.endfor
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post-build:
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.for app in ${APPLIST}
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@ cd ${${app}_WRKSRC} && \
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${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \
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${MAKE_ARGS}
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.endfor
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#.if defined(WITH_JEMBOSS)
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# @ cd ${JEMBOSS_WRKSRC} && \
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# ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \
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# ${MAKE_ARGS}
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#.endif
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post-install:
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.for app in ${APPLIST}
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@ cd ${${app}_WRKSRC} && \
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${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \
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${MAKE_ARGS} ${INSTALL_TARGET}
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.endfor
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@ ${PERL} -pe 's#%%PREFIX%%#${PREFIX}#' \
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${CONFIG_FILE} > ${PREFIX}/etc/emboss.default.sample && \
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${CHOWN} ${SHAREOWN}:${SHAREGRP} \
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${PREFIX}/etc/emboss.default.sample
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@ ${PERL} -pe 's#%%PREFIX%%#${PREFIX}#' \
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pkg-message > ${PKGMESSAGE}
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.if !defined(BATCH)
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@ ${CAT} ${PKGMESSAGE}
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.endif
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post-clean:
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@ ${RM} -f ${WRKDIRPREFIX}${.CURDIR}/Makefile.inc
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.include <bsd.port.mk>
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