702ce22305
sequences. It stands for Sequence Search and Alignment by Hashing Algorithm. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/ PR: ports/124525 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: gabor (mentor, implicit)
15 lines
629 B
Text
15 lines
629 B
Text
--- ./Binary/makefile.orig 2008-06-12 16:00:19.000000000 -0300
|
|
+++ ./Binary/makefile 2008-06-12 16:00:43.000000000 -0300
|
|
@@ -11,10 +11,10 @@
|
|
# copy of the SSAHA directory structure you should be able to make files
|
|
# straight away.
|
|
#
|
|
-# SSAHA_TOP_DIR=$(SSAHA_DIR?$(SSAHA_DIR):$(PWD)/../)
|
|
+SSAHA_TOP_DIR=$(PWD)/../
|
|
# Above is a nice idea, but syntax doesn't work for all versions of make
|
|
# so must define CURRENT_SSAHA_VERSION, eg in your .cshrc file - TC 14.3.01
|
|
-SSAHA_TOP_DIR=$(CURRENT_SSAHA_VERSION)
|
|
+# SSAHA_TOP_DIR=$(CURRENT_SSAHA_VERSION)
|
|
|
|
GLOBAL_DIR=${SSAHA_TOP_DIR}/Global
|
|
SEQ_DIR=${SSAHA_TOP_DIR}/SequenceReader
|