c9bd01bdf4
Fixes segfault with --genomebam in 0.46.2 Unbundle htslib A few new features and performance improvements Changes: https://github.com/pachterlab/kallisto/tags
26 lines
836 B
Text
26 lines
836 B
Text
--- src/CMakeLists.txt.orig 2021-11-24 14:45:50 UTC
|
|
+++ src/CMakeLists.txt
|
|
@@ -3,15 +3,13 @@ file(GLOB headers *.h *.hpp)
|
|
|
|
list(REMOVE_ITEM sources main.cpp)
|
|
|
|
-include_directories(../ext/htslib)
|
|
-
|
|
add_library(kallisto_core ${sources} ${headers})
|
|
target_include_directories(kallisto_core PUBLIC ${CMAKE_CURRENT_SOURCE_DIR})
|
|
|
|
add_executable(kallisto main.cpp)
|
|
|
|
find_package( Threads REQUIRED )
|
|
-target_link_libraries(kallisto kallisto_core pthread ${CMAKE_CURRENT_SOURCE_DIR}/../ext/htslib/libhts.a)
|
|
+target_link_libraries(kallisto kallisto_core pthread)
|
|
|
|
if(LINK MATCHES static)
|
|
set(BUILD_SHARED_LIBS OFF)
|
|
@@ -56,4 +54,4 @@ else()
|
|
endif(LINK MATCHES static)
|
|
|
|
|
|
-install(TARGETS kallisto DESTINATION "${CMAKE_INSTALL_BINDIR}")
|
|
\ No newline at end of file
|
|
+install(TARGETS kallisto DESTINATION "${CMAKE_INSTALL_BINDIR}")
|