c9bd01bdf4
Fixes segfault with --genomebam in 0.46.2 Unbundle htslib A few new features and performance improvements Changes: https://github.com/pachterlab/kallisto/tags
12 lines
373 B
C
12 lines
373 B
C
--- src/kseq.h.orig 2019-11-04 16:28:52 UTC
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+++ src/kseq.h
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@@ -32,6 +32,9 @@
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#include <string.h>
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#include <stdlib.h>
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+// Prevent redefinition of kstring_t below
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+#include <htslib/kstring.h>
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+
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#define KS_SEP_SPACE 0 // isspace(): \t, \n, \v, \f, \r
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#define KS_SEP_TAB 1 // isspace() && !' '
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#define KS_SEP_LINE 2 // line separator: "\n" (Unix) or "\r\n" (Windows)
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