fb16dfecae
Commit b7f05445c0 has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
20 lines
1.1 KiB
Text
20 lines
1.1 KiB
Text
Fast, reliable protein-coding gene prediction for prokaryotic genomes.
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Features:
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* Predicts protein-coding genes: Prodigal provides fast, accurate protein-coding
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gene predictions in GFF3, Genbank, or Sequin table format.
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* Handles draft genomes and metagenomes: Prodigal runs smoothly on finished
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genomes, draft genomes, and metagenomes.
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* Runs quickly: Prodigal analyzes the E. coli K-12 genome in 10 seconds on a
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modern MacBook Pro.
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* Runs unsupervised: Prodigal is an unsupervised machine learning algorithm. It
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does not need to be provided with any training data, and instead automatically
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learns the properties of the genome from the sequence itself, including RBS
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motif usage, start codon usage, and coding statistics.
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* Handles gaps and partial genes: The user can specify if Prodigal should build
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genes across runs of N's as well as how to handle genes at the edges of
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contigs.
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* Identifies translation initiation sites: Prodigal predicts the correct
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translation initiation site for most genes, and can output information about
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every potential start site in the genome, including confidence score, RBS
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motif, and much more.
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