fddb1ea643
Metaport to install tools for typical ChIP-Seq analysis, including QC, adapter trimming, alignment, and differential analysis. Presently identical to biology/atac-seq, but may diverge in the future.
27 lines
731 B
Makefile
27 lines
731 B
Makefile
PORTNAME= chip-seq
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DISTVERSION= 0.1.2
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CATEGORIES= biology python
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MASTER_SITES= # empty
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Metaport for ChIP-Seq analysis
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WWW= https://github.com/auerlab/
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LICENSE= BSD2CLAUSE
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RUN_DEPENDS= sra-tools>0:biology/sra-tools \
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fastq-trim>0:biology/fastq-trim \
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fastqc>0:biology/fastqc \
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${PYTHON_PKGNAMEPREFIX}multiqc>0:biology/py-multiqc@${PY_FLAVOR} \
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biolibc-tools>0:biology/biolibc-tools \
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bwa>0:biology/bwa \
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bowtie2>0:biology/bowtie2 \
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samtools>0:biology/samtools \
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${PYTHON_PKGNAMEPREFIX}macs2>0:biology/py-macs2@${PY_FLAVOR} \
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fasda>0:biology/fasda \
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peak-classifier>0:biology/peak-classifier \
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webbrowser>0:www/webbrowser
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USES= metaport python
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.include <bsd.port.mk>
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