43 lines
1.4 KiB
Makefile
43 lines
1.4 KiB
Makefile
PORTNAME= ngs
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DISTVERSION= 2.11.2
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CATEGORIES= biology
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PKGNAMESUFFIX= -sdk
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Tools and libraries for using data in the INSDC Sequence Read Archives
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LICENSE= PD
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LICENSE_FILE= ${WRKSRC}/LICENSE
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BROKEN_aarch64= fails to configure: unsupported architecture 'FreeBSD'
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BROKEN_riscv64= fails to configure: unsupported architecture 'FreeBSD'
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NOT_FOR_ARCHS= powerpc64
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NOT_FOR_ARCHS_REASON= os-arch.prl needs to be taught about powerpc64
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USES= compiler:c++11-lang gmake perl5
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USE_PERL5= build
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USE_LDCONFIG= yes
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USE_GITHUB= yes
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GH_ACCOUNT= ncbi
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HAS_CONFIGURE= yes
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CONFIGURE_ARGS= --prefix="${STAGEDIR}${PREFIX}" --build-prefix="${WRKSRC}/build"
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ALL_TARGET= ngs-sdk
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post-extract:
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@cd ${WRKSRC}/ngs-sdk/ngs/unix && ${LN} -s x86_64 amd64
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do-install: # install target from the project breaks: https://github.com/ncbi/ngs/issues/34
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# install headers
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cd ${WRKSRC}/ngs-sdk && ${COPYTREE_SHARE} ngs ${STAGEDIR}${PREFIX}/include
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${RM} -r ${STAGEDIR}${PREFIX}/include/ngs/win
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# install libraries
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cd ${WRKSRC}/build/ngs-sdk/FreeBSD/clang/${ARCH}/rel/lib && ${COPYTREE_SHARE} . ${STAGEDIR}${PREFIX}/lib
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# The above command installs broken-looking static libs with symlinks.
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# This is intentional, see comments https://github.com/ncbi/ncbi-vdb/issues/36#issuecomment-817990790 This may change in future versions.
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# strip
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${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libngs-sdk.so.${DISTVERSION}
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.include <bsd.port.mk>
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