963 lines
46 KiB
Text
963 lines
46 KiB
Text
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%%PYTHON_SITELIBDIR%%/cogent/parse/tree_xml.pyo
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%%PYTHON_SITELIBDIR%%/cogent/parse/unafold.py
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%%PYTHON_SITELIBDIR%%/cogent/parse/unafold.pyc
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%%PYTHON_SITELIBDIR%%/cogent/parse/unafold.pyo
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%%PYTHON_SITELIBDIR%%/cogent/parse/unigene.py
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%%PYTHON_SITELIBDIR%%/cogent/parse/unigene.pyc
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%%PYTHON_SITELIBDIR%%/cogent/parse/unigene.pyo
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%%PYTHON_SITELIBDIR%%/cogent/phylo/__init__.py
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%%PYTHON_SITELIBDIR%%/cogent/phylo/__init__.pyc
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%%PYTHON_SITELIBDIR%%/cogent/phylo/__init__.pyo
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%%PYTHON_SITELIBDIR%%/cogent/phylo/compatibility.py
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%%PYTHON_SITELIBDIR%%/cogent/phylo/compatibility.pyc
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%%PYTHON_SITELIBDIR%%/cogent/phylo/compatibility.pyo
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%%PYTHON_SITELIBDIR%%/cogent/phylo/consensus.py
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%%PYTHON_SITELIBDIR%%/cogent/phylo/consensus.pyc
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%%PYTHON_SITELIBDIR%%/cogent/phylo/consensus.pyo
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%%PYTHON_SITELIBDIR%%/cogent/phylo/distance.py
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%%PYTHON_SITELIBDIR%%/cogent/phylo/distance.pyc
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%%PYTHON_SITELIBDIR%%/cogent/phylo/distance.pyo
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%%PYTHON_SITELIBDIR%%/cogent/phylo/least_squares.py
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%%PYTHON_SITELIBDIR%%/cogent/phylo/least_squares.pyc
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%%PYTHON_SITELIBDIR%%/cogent/phylo/least_squares.pyo
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%%PYTHON_SITELIBDIR%%/cogent/phylo/maximum_likelihood.py
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%%PYTHON_SITELIBDIR%%/cogent/phylo/maximum_likelihood.pyc
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%%PYTHON_SITELIBDIR%%/cogent/phylo/maximum_likelihood.pyo
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%%PYTHON_SITELIBDIR%%/cogent/phylo/nj.py
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%%PYTHON_SITELIBDIR%%/cogent/phylo/nj.pyc
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%%PYTHON_SITELIBDIR%%/cogent/phylo/nj.pyo
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%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_collection.py
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%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_collection.pyc
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%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_collection.pyo
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%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_space.py
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%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_space.pyc
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%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_space.pyo
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%%PYTHON_SITELIBDIR%%/cogent/phylo/util.py
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%%PYTHON_SITELIBDIR%%/cogent/phylo/util.pyc
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%%PYTHON_SITELIBDIR%%/cogent/phylo/util.pyo
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/__init__.py
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/__init__.pyc
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/__init__.pyo
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/calculation.py
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/calculation.pyc
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/calculation.pyo
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/definition.py
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/definition.pyc
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/definition.pyo
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/scope.py
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/scope.pyc
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/scope.pyo
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/setting.py
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/setting.pyc
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%%PYTHON_SITELIBDIR%%/cogent/recalculation/setting.pyo
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/__init__.py
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/__init__.pyc
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/__init__.pyo
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/analysis.py
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/analysis.pyc
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/analysis.pyo
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/birth_death.py
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/birth_death.pyc
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/birth_death.pyo
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/markov.py
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/markov.pyc
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/markov.pyo
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray.py
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray.pyc
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray.pyo
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray_normalize.py
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray_normalize.pyc
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray_normalize.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/randomization.py
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/randomization.pyc
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/randomization.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/searchpath.py
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/searchpath.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/searchpath.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/sequence_generators.py
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/sequence_generators.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/sequence_generators.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/tree.py
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/tree.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/tree.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/usage.py
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/usage.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/seqsim/usage.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/_asa.so
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/_contact.so
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/__init__.py
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/__init__.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/__init__.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/annotation.py
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/annotation.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/annotation.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/asa.py
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/asa.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/asa.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/contact.py
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/contact.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/contact.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/dihedral.py
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/dihedral.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/dihedral.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/knots.py
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/knots.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/knots.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/manipulation.py
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/manipulation.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/manipulation.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/pairs_util.py
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/pairs_util.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/pairs_util.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/rna2d.py
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/rna2d.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/rna2d.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/selection.py
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/selection.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/struct/selection.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/__init__.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/__init__.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/__init__.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/array.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/array.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/array.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/checkpointing.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/checkpointing.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/checkpointing.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/datatypes.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/datatypes.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/datatypes.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/dict2d.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/dict2d.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/dict2d.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/dict_array.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/dict_array.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/dict_array.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/misc.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/misc.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/misc.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/modules.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/modules.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/modules.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/organizer.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/organizer.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/organizer.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/parallel.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/parallel.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/parallel.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/table.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/table.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/table.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/transform.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/transform.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/transform.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/trie.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/trie.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/trie.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/unit_test.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/unit_test.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/unit_test.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/update_version.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/update_version.pyc
|
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%%PYTHON_SITELIBDIR%%/cogent/util/update_version.pyo
|
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%%PYTHON_SITELIBDIR%%/cogent/util/warning.py
|
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%%PYTHON_SITELIBDIR%%/cogent/util/warning.pyc
|
|
%%PYTHON_SITELIBDIR%%/cogent/util/warning.pyo
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/align/weights
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/align
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/app
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/cluster
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/core
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/data
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/db/ensembl
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/db
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/draw
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/evolve
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/format
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/matrix
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/spatial
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/stats
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/unifrac
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/motif
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/parse
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/phylo
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/recalculation
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/seqsim
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/struct
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/util
|
|
@dirrm %%PYTHON_SITELIBDIR%%/cogent/
|